==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=4-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER SIGNALING PROTEIN 06-JUL-07 2QJ5 . COMPND 2 MOLECULE: PHOTOACTIVE YELLOW PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HALORHODOSPIRA HALOPHILA; . AUTHOR P.D.COUREUX,Z.P.FAN,V.STOJANOFF,U.K.GENICK . 121 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6487.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 79 65.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 30 24.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 2 1.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 4.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 14 11.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 23 19.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 4 3.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 3 A H 0 0 246 0, 0.0 2,-0.3 0, 0.0 23,-0.1 0.000 360.0 360.0 360.0 145.3 1.3 14.5 -12.6 2 4 A V - 0 0 19 10,-0.0 23,-0.5 11,-0.0 2,-0.3 -0.972 360.0-137.9-144.3 132.2 0.5 18.2 -12.1 3 5 A A > - 0 0 60 -2,-0.3 3,-1.9 1,-0.1 6,-0.1 -0.677 26.9-101.0 -92.9 143.8 3.0 21.0 -12.6 4 6 A F T 3 S+ 0 0 38 -2,-0.3 -1,-0.1 1,-0.3 116,-0.0 -0.326 110.4 20.4 -50.2 131.6 3.5 24.0 -10.5 5 7 A G T 3 S+ 0 0 32 1,-0.2 -1,-0.3 101,-0.1 84,-0.0 0.530 83.3 162.6 81.2 8.7 1.8 27.0 -12.1 6 8 A S X - 0 0 33 -3,-1.9 3,-1.7 1,-0.1 -1,-0.2 -0.335 45.8-124.6 -62.4 143.3 -0.5 24.9 -14.3 7 9 A E T 3 S+ 0 0 91 1,-0.3 3,-0.2 2,-0.1 -1,-0.1 0.777 109.5 32.6 -63.7 -30.1 -3.4 27.0 -15.6 8 10 A D T >> S+ 0 0 87 1,-0.1 4,-1.7 2,-0.1 3,-1.4 -0.029 77.3 131.9-116.1 31.2 -6.1 24.6 -14.2 9 11 A I H <> S+ 0 0 0 -3,-1.7 4,-2.6 1,-0.3 5,-0.2 0.833 70.9 56.3 -51.4 -37.2 -4.2 23.5 -11.1 10 12 A E H 3> S+ 0 0 43 -4,-0.2 4,-1.3 1,-0.2 101,-0.4 0.789 104.9 52.5 -70.5 -27.4 -7.2 24.1 -8.9 11 13 A N H <> S+ 0 0 63 -3,-1.4 4,-0.8 2,-0.2 -2,-0.2 0.947 112.3 44.4 -68.0 -49.5 -9.3 21.8 -11.0 12 14 A T H >< S+ 0 0 37 -4,-1.7 3,-0.9 1,-0.2 -2,-0.2 0.924 115.5 46.8 -62.2 -48.2 -6.8 18.9 -10.7 13 15 A L H >< S+ 0 0 2 -4,-2.6 3,-1.7 1,-0.2 -1,-0.2 0.789 100.2 67.6 -69.3 -27.1 -6.2 19.4 -7.0 14 16 A A H 3< S+ 0 0 50 -4,-1.3 -1,-0.2 1,-0.3 -2,-0.2 0.816 99.8 51.8 -57.5 -30.5 -10.0 19.6 -6.3 15 17 A K T << S+ 0 0 151 -3,-0.9 2,-0.3 -4,-0.8 -1,-0.3 0.394 96.4 100.4 -87.4 2.1 -10.2 16.0 -7.2 16 18 A M < - 0 0 44 -3,-1.7 2,-0.1 -4,-0.1 -3,-0.0 -0.701 51.7-161.6-101.1 141.2 -7.4 15.0 -4.8 17 19 A D > - 0 0 98 -2,-0.3 4,-2.3 0, 0.0 5,-0.2 -0.246 49.3 -74.6 -94.4-166.8 -7.3 13.4 -1.4 18 20 A D H > S+ 0 0 113 1,-0.2 4,-3.2 2,-0.2 5,-0.2 0.911 126.1 49.9 -61.8 -50.0 -4.4 13.4 1.2 19 21 A G H > S+ 0 0 53 2,-0.2 4,-0.9 1,-0.2 -1,-0.2 0.900 114.1 45.3 -58.0 -45.9 -2.1 10.8 -0.5 20 22 A Q H >4 S+ 0 0 90 2,-0.2 3,-0.6 1,-0.2 4,-0.5 0.927 114.5 48.1 -63.4 -47.9 -2.3 12.5 -3.9 21 23 A L H >< S+ 0 0 7 -4,-2.3 3,-1.2 1,-0.3 22,-0.3 0.906 110.3 52.3 -60.3 -43.1 -1.7 15.9 -2.3 22 24 A D H 3< S+ 0 0 76 -4,-3.2 -1,-0.3 1,-0.2 -2,-0.2 0.719 105.8 57.7 -62.7 -21.1 1.2 14.5 -0.3 23 25 A G T << S+ 0 0 62 -4,-0.9 -1,-0.2 -3,-0.6 -2,-0.2 0.537 79.7 120.2 -87.0 -7.8 2.6 13.2 -3.6 24 26 A L < - 0 0 15 -3,-1.2 19,-0.1 -4,-0.5 4,-0.1 -0.187 67.7-130.9 -59.4 150.0 2.7 16.6 -5.4 25 27 A A S S+ 0 0 98 -23,-0.5 2,-0.3 2,-0.1 -1,-0.1 0.618 89.4 47.6 -73.4 -15.7 6.1 17.9 -6.6 26 28 A F S S- 0 0 5 94,-0.1 18,-0.3 1,-0.0 17,-0.3 -0.835 96.7 -89.5-126.5 159.2 5.5 21.3 -4.9 27 29 A G E -A 119 0A 0 92,-2.5 92,-2.0 16,-0.3 2,-0.4 -0.468 42.3-170.9 -66.6 139.7 4.4 22.5 -1.5 28 30 A A E +A 118 0A 2 90,-0.2 13,-2.3 -2,-0.2 2,-0.4 -0.969 9.5 175.1-142.3 120.3 0.6 23.0 -1.3 29 31 A I E -AB 117 40A 0 88,-2.4 88,-2.8 -2,-0.4 2,-0.5 -0.962 16.3-152.1-119.1 138.9 -1.3 24.6 1.6 30 32 A Q E -AB 116 39A 25 9,-2.3 8,-3.3 -2,-0.4 9,-1.6 -0.976 17.9-175.7-113.7 129.1 -5.0 25.3 1.7 31 33 A L E -AB 115 37A 0 84,-3.1 84,-2.7 -2,-0.5 6,-0.2 -0.869 20.8-130.1-115.9 150.1 -6.2 28.2 3.8 32 34 A D > - 0 0 40 4,-2.1 3,-1.9 -2,-0.3 82,-0.2 -0.312 47.9 -86.1 -82.5-178.9 -9.6 29.5 4.6 33 35 A G T 3 S+ 0 0 31 80,-0.5 48,-0.1 1,-0.3 81,-0.1 0.666 130.0 54.5 -66.0 -17.2 -10.5 33.1 4.1 34 36 A D T 3 S- 0 0 120 2,-0.1 -1,-0.3 0, 0.0 44,-0.0 0.381 120.7-105.8 -92.8 -1.5 -9.1 34.0 7.6 35 37 A G < + 0 0 0 -3,-1.9 25,-2.7 1,-0.3 26,-0.3 0.590 69.4 149.1 84.4 11.0 -5.7 32.4 6.8 36 38 A N B -E 59 0B 49 23,-0.2 -4,-2.1 24,-0.1 2,-0.5 -0.598 53.3-110.3 -77.6 141.5 -6.4 29.3 8.9 37 39 A I E +B 31 0A 3 21,-3.0 20,-2.7 18,-0.3 -6,-0.2 -0.604 41.8 166.3 -81.1 118.5 -4.6 26.2 7.7 38 40 A L E S+ 0 0 73 -8,-3.3 2,-0.3 -2,-0.5 -7,-0.2 0.797 71.7 8.0 -93.8 -40.1 -7.0 23.5 6.3 39 41 A Q E -B 30 0A 49 -9,-1.6 -9,-2.3 16,-0.1 -1,-0.4 -0.977 57.0-179.1-143.8 153.3 -4.5 21.3 4.5 40 42 A Y E -B 29 0A 14 -2,-0.3 -11,-0.2 -11,-0.2 16,-0.1 -0.875 22.6-141.7-159.3 112.9 -0.7 21.2 4.4 41 43 A N > - 0 0 4 -13,-2.3 4,-1.8 -2,-0.3 3,-0.2 -0.242 22.6-109.6 -88.4 171.1 1.1 18.6 2.3 42 44 A A H > S+ 0 0 36 1,-0.2 4,-1.7 2,-0.2 5,-0.1 0.868 115.2 58.1 -63.9 -37.3 4.2 16.6 2.7 43 45 A A H > S+ 0 0 15 -22,-0.3 4,-1.0 -17,-0.3 -16,-0.3 0.882 104.7 51.3 -62.3 -37.7 6.2 18.5 0.1 44 46 A E H >> S+ 0 0 2 -18,-0.3 4,-2.2 -3,-0.2 3,-0.9 0.933 107.6 52.1 -66.0 -43.8 5.6 21.8 2.0 45 47 A G H 3X S+ 0 0 10 -4,-1.8 4,-2.5 1,-0.3 -1,-0.2 0.823 104.5 57.9 -60.5 -30.4 6.9 20.2 5.2 46 48 A D H 3< S+ 0 0 126 -4,-1.7 -1,-0.3 1,-0.2 -2,-0.2 0.763 111.1 43.1 -69.6 -26.0 10.0 19.1 3.3 47 49 A I H << S+ 0 0 18 -4,-1.0 -2,-0.2 -3,-0.9 -1,-0.2 0.875 129.0 24.2 -79.0 -40.1 10.6 22.8 2.4 48 50 A T H < S- 0 0 11 -4,-2.2 -2,-0.2 2,-0.2 -3,-0.2 0.559 92.9-122.2-111.7 -14.5 9.9 24.3 5.9 49 51 A G < + 0 0 71 -4,-2.5 2,-0.3 1,-0.3 -4,-0.1 0.484 64.6 137.5 79.5 4.3 10.4 21.6 8.5 50 52 A R - 0 0 36 -6,-0.2 -1,-0.3 -5,-0.1 -2,-0.2 -0.614 59.2-121.5 -82.3 140.6 6.8 21.9 9.8 51 53 A D >> - 0 0 69 -2,-0.3 4,-1.2 1,-0.1 3,-0.7 -0.768 18.1-144.9 -79.3 115.9 4.9 18.7 10.6 52 54 A P H 3> S+ 0 0 31 0, 0.0 4,-0.7 0, 0.0 -1,-0.1 0.770 98.5 52.5 -53.2 -34.9 1.8 18.8 8.4 53 55 A K H 34 S+ 0 0 179 1,-0.2 3,-0.3 2,-0.2 -2,-0.0 0.872 109.4 51.2 -67.2 -36.8 -0.4 17.2 11.1 54 56 A Q H <4 S+ 0 0 136 -3,-0.7 -1,-0.2 1,-0.2 -4,-0.0 0.681 107.6 48.6 -77.5 -22.7 0.7 19.8 13.7 55 57 A V H >< S+ 0 0 10 -4,-1.2 3,-2.2 -3,-0.1 -18,-0.3 0.610 79.2 112.0 -97.2 -12.0 0.0 23.0 11.7 56 58 A I T 3< S+ 0 0 77 -4,-0.7 -18,-0.2 -3,-0.3 3,-0.1 -0.437 84.9 22.8 -60.9 128.5 -3.6 22.1 10.6 57 59 A G T 3 S+ 0 0 55 -20,-2.7 -1,-0.3 1,-0.4 -19,-0.1 0.121 100.3 114.2 101.1 -20.9 -5.9 24.5 12.4 58 60 A K S < S- 0 0 107 -3,-2.2 -21,-3.0 -22,-0.1 2,-0.7 -0.354 74.8-103.1 -82.9 163.4 -3.3 27.1 13.0 59 61 A N B >> -E 36 0B 27 -23,-0.2 4,-2.2 1,-0.2 5,-2.0 -0.787 25.1-156.8 -91.2 122.5 -3.2 30.6 11.6 60 62 A F I 4>S+ 0 0 6 -25,-2.7 5,-2.9 -2,-0.7 8,-0.2 0.922 88.8 38.3 -63.2 -47.3 -0.7 30.8 8.8 61 63 A F I 45S+ 0 0 3 -26,-0.3 8,-0.2 3,-0.2 -1,-0.2 0.807 123.2 39.1 -80.4 -29.7 -0.0 34.6 8.9 62 64 A K I 45S+ 0 0 146 -27,-0.1 -2,-0.2 6,-0.1 -1,-0.1 0.923 134.0 3.6 -82.1 -48.1 -0.1 35.1 12.6 63 65 A D I <5S+ 0 0 84 -4,-2.2 -3,-0.2 2,-0.1 -2,-0.1 0.835 125.9 41.3-114.4 -46.0 1.6 32.0 14.0 64 66 A V I < + 0 0 14 -5,-2.9 3,-2.2 -6,-0.3 4,-0.3 -0.567 65.3 163.7-130.2 62.8 4.7 31.9 8.9 66 68 A P G > S+ 0 0 44 0, 0.0 3,-1.9 0, 0.0 -1,-0.1 0.823 72.7 65.6 -60.1 -28.1 5.2 35.3 10.5 67 69 A C G 3 S+ 0 0 34 1,-0.3 26,-0.1 -3,-0.1 -6,-0.1 0.673 93.9 61.8 -68.2 -14.1 7.6 36.4 7.8 68 70 A T G < S+ 0 0 0 -3,-2.2 6,-2.2 -8,-0.2 2,-1.6 0.474 73.0 103.1 -88.8 -5.0 4.7 36.3 5.3 69 71 A D < + 0 0 98 -3,-1.9 -1,-0.1 -4,-0.3 3,-0.0 -0.641 61.1 103.3 -78.2 86.4 2.7 38.9 7.2 70 72 A S S > >S- 0 0 19 -2,-1.6 5,-2.9 1,-0.1 3,-1.2 -0.973 87.8-102.6-160.5 158.0 3.5 41.7 4.8 71 73 A P T 3 >S+ 0 0 96 0, 0.0 5,-0.6 0, 0.0 -1,-0.1 0.859 119.0 61.3 -55.6 -31.1 1.9 43.7 2.0 72 74 A E T 3 5S+ 0 0 112 3,-0.2 -3,-0.1 4,-0.1 -4,-0.0 0.641 126.5 4.4 -72.4 -19.2 3.8 41.5 -0.5 73 75 A F T <>5S+ 0 0 0 -3,-1.2 4,-2.3 -5,-0.2 3,-0.3 0.505 138.6 34.1-130.1 -78.0 2.3 38.2 0.7 74 76 A Y H >5S+ 0 0 85 -6,-2.2 4,-2.5 1,-0.2 5,-0.2 0.881 118.7 56.3 -52.8 -41.6 -0.5 38.5 3.2 75 77 A G H >