==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN BINDING/ NUCLEAR PROTEIN 28-JAN-11 3QJ6 . COMPND 2 MOLECULE: HEPATOMA-DERIVED GROWTH FACTOR-RELATED PROTEIN 2; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR H.ZENG,M.F.AMAYA,W.TEMPEL,J.R.WALKER,F.MACKENZIE,C.BOUNTRA,J . 95 3 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6023.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 52 54.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 18 18.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 9.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 8.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 14 14.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 2 A P 0 0 177 0, 0.0 2,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 155.0 25.9 41.3 -6.4 2 3 A H - 0 0 187 1,-0.1 2,-0.1 3,-0.0 3,-0.1 -0.537 360.0 -78.8-122.4 175.0 28.1 38.5 -5.1 3 4 A A - 0 0 73 -2,-0.2 -1,-0.1 1,-0.1 2,-0.1 -0.384 56.9 -90.3 -76.6 157.4 28.3 34.8 -5.5 4 5 A F - 0 0 44 -2,-0.1 -1,-0.1 4,-0.0 3,-0.0 -0.399 48.0-174.1 -65.5 144.8 26.1 32.5 -3.6 5 6 A K > - 0 0 122 -2,-0.1 3,-2.1 -3,-0.1 19,-0.3 -0.967 38.3 -72.7-141.6 152.4 27.4 31.4 -0.2 6 7 A P T 3 S+ 0 0 72 0, 0.0 19,-0.2 0, 0.0 3,-0.1 -0.122 118.5 30.9 -51.1 140.6 26.1 29.0 2.4 7 8 A G T 3 S+ 0 0 27 17,-3.3 2,-0.1 1,-0.3 18,-0.1 0.186 83.0 135.2 94.6 -16.2 23.0 30.3 4.2 8 9 A D < - 0 0 38 -3,-2.1 16,-2.6 17,-0.1 2,-0.4 -0.462 51.4-132.3 -68.8 139.0 21.7 32.3 1.3 9 10 A L E +A 23 0A 35 14,-0.2 50,-2.3 -2,-0.1 2,-0.3 -0.750 37.7 154.0 -97.7 136.8 18.0 31.9 0.8 10 11 A V E -AB 22 58A 0 12,-2.4 12,-2.2 -2,-0.4 2,-0.4 -0.864 47.0-110.1-145.0 171.7 16.6 31.2 -2.7 11 12 A F E -AB 21 57A 0 46,-2.1 46,-2.5 -2,-0.3 2,-0.4 -0.982 39.9-155.6-106.6 134.9 13.9 29.8 -4.9 12 13 A A E -AB 20 56A 0 8,-2.7 8,-2.4 -2,-0.4 2,-0.6 -0.926 2.7-146.7-120.1 130.3 15.3 26.7 -6.6 13 14 A K + 0 0 53 42,-2.1 2,-0.3 -2,-0.4 6,-0.1 -0.852 18.1 175.2-103.8 123.3 14.0 25.3 -9.9 14 15 A M > - 0 0 25 -2,-0.6 3,-2.0 4,-0.3 37,-0.0 -0.923 46.9 -77.9-118.3 153.8 14.0 21.6 -10.7 15 16 A K T 3 S+ 0 0 197 -2,-0.3 -1,-0.0 1,-0.3 0, 0.0 -0.170 115.5 4.9 -42.7 126.0 12.6 19.8 -13.7 16 17 A G T 3 S+ 0 0 60 1,-0.2 -1,-0.3 -3,-0.0 -3,-0.0 0.631 111.6 94.9 72.5 17.2 8.8 19.4 -13.3 17 18 A Y S < S- 0 0 85 -3,-2.0 -3,-0.2 3,-0.0 -1,-0.2 -0.976 75.9-107.7-134.1 150.9 8.4 21.5 -10.1 18 19 A P - 0 0 34 0, 0.0 -4,-0.3 0, 0.0 2,-0.2 -0.280 59.0 -72.6 -67.0 163.8 7.5 25.1 -9.3 19 20 A H - 0 0 38 -6,-0.1 -6,-0.2 -8,-0.1 37,-0.0 -0.431 65.1-149.4 -60.3 124.7 10.3 27.4 -8.1 20 21 A W E -A 12 0A 4 -8,-2.4 -8,-2.7 -2,-0.2 -10,-0.1 -0.843 14.6-109.0-117.6 135.6 10.7 26.1 -4.5 21 22 A P E +A 11 0A 0 0, 0.0 22,-1.9 0, 0.0 2,-0.3 -0.340 60.1 137.8 -60.0 133.3 11.8 27.8 -1.2 22 23 A A E -AC 10 42A 0 -12,-2.2 -12,-2.4 20,-0.3 2,-0.3 -0.924 40.0-129.8-163.7 176.6 15.3 26.6 -0.3 23 24 A R E -AC 9 41A 31 18,-2.0 18,-2.6 -2,-0.3 2,-0.5 -0.989 29.4-105.3-145.2 153.9 18.7 27.6 1.0 24 25 A I E - C 0 40A 1 -16,-2.6 -17,-3.3 -2,-0.3 16,-0.2 -0.693 47.9-149.0 -75.5 122.0 22.3 27.2 -0.0 25 26 A D - 0 0 39 14,-2.5 2,-0.3 -2,-0.5 -17,-0.1 -0.531 15.1-103.8 -94.4 162.7 23.6 24.6 2.5 26 27 A D - 0 0 122 -2,-0.2 -1,-0.1 1,-0.1 -21,-0.0 -0.661 23.6-135.6 -82.7 142.1 27.0 24.0 4.0 27 28 A I 0 0 54 -2,-0.3 -1,-0.1 1,-0.2 -2,-0.0 0.239 360.0 360.0 -83.6 16.2 28.9 21.1 2.4 28 29 A A 0 0 112 4,-0.0 -1,-0.2 3,-0.0 4,-0.0 0.975 360.0 360.0 -61.8 360.0 30.0 19.9 5.8 29 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 30 32 A A 0 0 89 0, 0.0 2,-0.4 0, 0.0 -3,-0.1 0.000 360.0 360.0 360.0 135.5 28.3 14.8 2.8 31 33 A V - 0 0 82 1,-0.0 -3,-0.0 0, 0.0 0, 0.0 -0.719 360.0-131.1 -84.5 133.4 28.5 14.4 -1.0 32 34 A K - 0 0 77 -2,-0.4 6,-0.1 1,-0.1 18,-0.1 -0.692 20.0-114.7 -96.2 133.2 30.2 17.3 -2.7 33 35 A P - 0 0 35 0, 0.0 3,-0.1 0, 0.0 -1,-0.1 -0.091 29.6-104.5 -65.7 159.7 28.7 19.2 -5.7 34 36 A P > - 0 0 63 0, 0.0 3,-1.6 0, 0.0 0, 0.0 -0.271 65.6 -53.7 -70.0 169.5 30.2 19.2 -9.1 35 37 A P T 3 S+ 0 0 125 0, 0.0 3,-0.1 0, 0.0 17,-0.0 -0.107 123.1 1.2 -47.4 136.6 32.0 22.4 -10.4 36 38 A N T 3 S+ 0 0 123 1,-0.2 2,-0.3 -3,-0.1 0, 0.0 0.692 105.9 112.3 51.5 28.5 29.9 25.6 -10.1 37 39 A K < - 0 0 102 -3,-1.6 15,-0.3 15,-0.2 -1,-0.2 -0.904 54.8-143.5-120.7 157.6 26.9 23.9 -8.6 38 40 A Y E - D 0 51A 51 13,-2.8 13,-1.8 -2,-0.3 2,-0.4 -0.853 19.0-111.6-120.2 151.8 25.7 24.4 -5.0 39 41 A P E - D 0 50A 13 0, 0.0 -14,-2.5 0, 0.0 2,-0.5 -0.734 38.7-159.8 -81.5 130.7 24.1 22.0 -2.5 40 42 A I E -CD 24 49A 0 9,-3.0 9,-1.5 -2,-0.4 2,-0.6 -0.947 14.0-157.8-122.9 125.4 20.5 23.0 -2.0 41 43 A F E -CD 23 48A 17 -18,-2.6 -18,-2.0 -2,-0.5 2,-0.6 -0.920 18.2-145.3 -99.0 122.9 18.2 22.2 1.0 42 44 A F E > -C 22 0A 0 5,-3.1 4,-1.5 -2,-0.6 5,-0.4 -0.797 13.3-131.3 -91.2 123.3 14.5 22.4 -0.0 43 45 A F T 4 S+ 0 0 0 -22,-1.9 2,-1.4 -2,-0.6 35,-0.3 -0.340 86.0 23.3 -66.9 152.9 12.2 23.7 2.6 44 46 A G T 4 S+ 0 0 15 33,-0.3 -1,-0.2 1,-0.2 31,-0.1 -0.518 130.3 39.8 92.2 -68.9 9.1 21.7 3.3 45 47 A T T 4 S- 0 0 50 -2,-1.4 -1,-0.2 29,-0.1 -2,-0.2 0.631 95.1-142.3 -86.4 -15.6 10.3 18.3 1.9 46 48 A H < + 0 0 64 -4,-1.5 48,-0.4 1,-0.2 -3,-0.2 0.760 48.4 147.1 59.3 29.5 13.8 18.8 3.5 47 49 A E - 0 0 46 -5,-0.4 -5,-3.1 -4,-0.1 2,-0.3 -0.453 37.9-137.8 -90.1 167.0 15.4 17.2 0.4 48 50 A T E +De 41 95A 10 46,-2.5 48,-3.3 -7,-0.2 2,-0.3 -0.891 25.4 158.9-122.6 152.0 18.7 18.1 -1.1 49 51 A A E -D 40 0A 11 -9,-1.5 -9,-3.0 -2,-0.3 2,-0.6 -0.967 37.1-111.4-159.2 172.6 20.0 18.5 -4.7 50 52 A F E +D 39 0A 52 -2,-0.3 2,-0.3 -11,-0.2 -2,-0.0 -0.938 40.1 167.5-114.9 118.2 22.8 20.1 -6.6 51 53 A L E -D 38 0A 15 -13,-1.8 -13,-2.8 -2,-0.6 -2,-0.1 -0.950 29.5-128.0-131.8 145.4 21.9 23.1 -8.8 52 54 A G > - 0 0 9 -2,-0.3 3,-2.4 -15,-0.3 -15,-0.2 -0.511 41.1 -96.8 -83.7 161.7 23.9 25.7 -10.7 53 55 A P G > S+ 0 0 51 0, 0.0 3,-2.7 0, 0.0 -1,-0.1 0.749 116.7 75.2 -48.0 -33.6 23.1 29.5 -10.3 54 56 A K G 3 S+ 0 0 170 1,-0.3 -3,-0.0 3,-0.0 3,-0.0 0.708 103.3 40.7 -56.0 -19.3 20.9 29.4 -13.5 55 57 A D G < S+ 0 0 37 -3,-2.4 -42,-2.1 -43,-0.0 2,-0.5 0.239 100.3 93.2-107.9 12.4 18.3 27.6 -11.4 56 58 A L E < -B 12 0A 10 -3,-2.7 -44,-0.2 -44,-0.2 -37,-0.0 -0.937 50.9-174.4-120.6 121.6 18.8 29.8 -8.3 57 59 A F E -B 11 0A 55 -46,-2.5 -46,-2.1 -2,-0.5 -3,-0.0 -0.948 32.3-112.2-120.1 115.3 16.7 32.9 -7.7 58 60 A P E > -B 10 0A 60 0, 0.0 4,-2.2 0, 0.0 -48,-0.3 -0.174 27.4-130.3 -50.3 136.3 17.5 35.2 -4.7 59 61 A Y H > S+ 0 0 25 -50,-2.3 4,-2.0 1,-0.2 7,-0.2 0.909 97.6 41.2 -57.1 -55.9 14.7 35.1 -2.1 60 62 A D H 4 S+ 0 0 109 -51,-0.2 4,-0.3 1,-0.2 -1,-0.2 0.842 117.0 47.6 -74.7 -33.1 13.8 38.7 -1.4 61 63 A K H 4 S+ 0 0 175 1,-0.1 3,-0.3 2,-0.1 -1,-0.2 0.948 124.5 32.3 -60.1 -49.0 14.0 39.8 -5.1 62 64 A C H >X S+ 0 0 13 -4,-2.2 4,-2.6 1,-0.2 3,-1.1 0.538 89.5 91.6 -95.2 -8.3 11.9 36.9 -6.2 63 65 A K H 3X S+ 0 0 64 -4,-2.0 4,-3.0 1,-0.3 -1,-0.2 0.846 83.3 58.5 -64.6 -37.0 9.4 36.1 -3.4 64 66 A D H 34 S+ 0 0 136 -4,-0.3 -1,-0.3 -3,-0.3 -2,-0.1 0.857 115.4 39.0 -54.5 -35.2 6.7 38.3 -4.7 65 67 A K H <4 S+ 0 0 157 -3,-1.1 3,-0.2 -4,-0.2 -2,-0.2 0.939 135.3 15.9 -80.5 -51.1 6.8 36.2 -7.9 66 68 A Y H < S+ 0 0 45 -4,-2.6 -3,-0.2 -7,-0.2 -2,-0.2 0.503 104.5 83.6-105.7 -6.9 7.4 32.7 -6.5 67 69 A G < + 0 0 15 -4,-3.0 -1,-0.2 -5,-0.4 -3,-0.1 0.352 61.3 113.8 -84.0 8.1 6.4 33.0 -2.8 68 70 A K S S- 0 0 142 -3,-0.2 -4,-0.0 -5,-0.1 11,-0.0 -0.548 78.2 -94.9 -79.1 140.6 2.7 32.6 -3.3 69 71 A P - 0 0 100 0, 0.0 2,-0.2 0, 0.0 -1,-0.1 -0.196 41.2-163.5 -51.1 144.9 1.1 29.4 -1.8 70 72 A N - 0 0 51 2,-0.2 6,-0.2 -3,-0.1 -3,-0.0 -0.721 29.8-124.5-117.1 174.7 0.6 26.4 -4.1 71 73 A K S S+ 0 0 109 -2,-0.2 2,-0.4 4,-0.1 3,-0.1 0.215 73.7 121.2 -99.0 11.0 -1.5 23.2 -3.7 72 74 A R S >> S- 0 0 117 1,-0.1 3,-2.7 2,-0.0 4,-0.5 -0.637 77.2 -97.8 -84.4 127.6 1.7 21.1 -4.1 73 75 A K T 34 S+ 0 0 94 -2,-0.4 -1,-0.1 1,-0.3 -28,-0.1 -0.101 106.6 6.9 -43.9 125.3 2.6 18.8 -1.3 74 76 A G T 3> S+ 0 0 15 -30,-0.1 4,-1.8 -3,-0.1 -1,-0.3 0.230 100.3 104.0 88.5 -12.7 5.2 20.4 1.0 75 77 A F H <> S+ 0 0 1 -3,-2.7 4,-1.7 2,-0.2 5,-0.1 0.946 81.5 43.0 -71.3 -50.0 5.2 23.8 -0.7 76 78 A N H X S+ 0 0 69 -4,-0.5 4,-2.3 1,-0.2 -1,-0.2 0.904 112.7 54.2 -64.6 -41.1 3.2 25.8 1.9 77 79 A E H > S+ 0 0 111 1,-0.2 4,-2.3 2,-0.2 -33,-0.3 0.913 107.9 52.4 -51.6 -45.9 5.1 24.1 4.7 78 80 A G H X S+ 0 0 0 -4,-1.8 4,-2.5 -35,-0.3 -2,-0.2 0.807 105.2 53.1 -63.4 -34.6 8.3 25.3 2.9 79 81 A L H X S+ 0 0 9 -4,-1.7 4,-1.6 2,-0.2 -1,-0.2 0.903 109.4 50.3 -66.0 -40.7 7.0 28.9 2.8 80 82 A W H X S+ 0 0 151 -4,-2.3 4,-2.1 2,-0.2 5,-0.4 0.957 112.0 47.5 -60.3 -47.9 6.4 28.7 6.5 81 83 A E H X S+ 0 0 19 -4,-2.3 4,-2.5 1,-0.2 3,-0.3 0.943 112.5 46.1 -62.3 -49.5 10.0 27.4 7.0 82 84 A I H < S+ 0 0 3 -4,-2.5 -1,-0.2 1,-0.2 -2,-0.2 0.814 118.0 45.4 -66.4 -25.1 11.8 30.0 4.9 83 85 A Q H < S+ 0 0 112 -4,-1.6 -1,-0.2 -5,-0.2 -2,-0.2 0.756 124.6 27.5 -87.6 -28.1 9.7 32.8 6.5 84 86 A N H < S+ 0 0 91 -4,-2.1 -3,-0.2 -3,-0.3 -2,-0.2 0.695 138.6 2.1-110.7 -30.1 10.0 31.8 10.2 85 87 A N >< + 0 0 84 -4,-2.5 3,-1.2 -5,-0.4 -2,-0.1 -0.249 61.4 160.3-160.4 66.4 13.3 29.8 10.6 86 88 A P T 3 S+ 0 0 21 0, 0.0 -4,-0.1 0, 0.0 -79,-0.1 0.677 80.6 46.1 -61.6 -22.9 15.3 29.6 7.4 87 89 A H T 3 S+ 0 0 122 -6,-0.1 -5,-0.1 2,-0.1 3,-0.0 0.241 87.0 112.6-109.9 12.0 18.6 28.8 9.3 88 90 A A S < S- 0 0 24 -3,-1.2 2,-0.5 -7,-0.2 -3,-0.1 -0.223 76.8 -98.6 -72.5 167.2 17.3 26.1 11.8 89 91 A S + 0 0 114 1,-0.1 -1,-0.1 2,-0.1 -2,-0.1 -0.819 34.0 179.9 -84.4 125.5 18.3 22.4 11.7 90 92 A Y 0 0 50 -2,-0.5 -1,-0.1 -44,-0.0 -2,-0.0 0.200 360.0 360.0-106.1 16.1 15.6 20.4 10.0 91 93 A S 0 0 141 2,-0.0 -2,-0.1 0, 0.0 -45,-0.0 -0.274 360.0 360.0 -57.1 360.0 17.6 17.2 10.5 92 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 93 76 T Q 0 0 117 0, 0.0 2,-0.6 0, 0.0 -46,-0.1 0.000 360.0 360.0 360.0 123.1 21.3 14.3 2.9 94 77 T D - 0 0 111 -48,-0.4 -46,-2.5 -45,-0.0 2,-0.1 -0.917 360.0-138.6-114.0 101.2 18.0 13.0 1.4 95 78 T F B -e 48 0A 98 -2,-0.6 2,-0.4 -48,-0.2 -46,-0.2 -0.360 7.6-130.2 -73.5 132.8 18.5 13.5 -2.3 96 79 T X 0 0 23 -48,-3.3 -1,-0.1 1,-0.2 0, 0.0 -0.671 360.0 360.0 -82.7 132.4 15.7 14.8 -4.4 97 80 T T 0 0 123 -2,-0.4 -1,-0.2 -48,-0.1 -2,-0.0 0.959 360.0 360.0 -83.5 360.0 14.9 12.7 -7.5