==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=10-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PEPTIDE RECOGNITION 25-AUG-99 1QLC . COMPND 2 MOLECULE: POSTSYNAPTIC DENSITY PROTEIN 95; . SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; . AUTHOR H.TOCHIO,F.HUNG,M.LI,M.ZHANG . 95 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5965.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 63 66.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 28 29.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 12 12.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 7.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 9 9.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 1 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 155 A A 0 0 154 0, 0.0 2,-0.2 0, 0.0 92,-0.1 0.000 360.0 360.0 360.0 112.5 -8.1 -6.9 -18.7 2 156 A E - 0 0 127 1,-0.1 2,-0.2 90,-0.1 88,-0.0 -0.641 360.0 -99.8-100.4 159.0 -8.0 -4.9 -15.5 3 157 A K E -A 91 0A 113 88,-1.0 88,-0.7 -2,-0.2 2,-0.4 -0.503 32.7-157.3 -77.9 144.7 -6.8 -1.3 -14.9 4 158 A V E +A 90 0A 96 86,-0.2 2,-0.3 -2,-0.2 86,-0.2 -0.986 15.2 171.5-128.3 125.4 -3.3 -0.7 -13.7 5 159 A M E -A 89 0A 77 84,-2.9 84,-2.6 -2,-0.4 2,-0.3 -0.938 24.6-129.2-132.0 154.5 -2.2 2.5 -11.9 6 160 A E E -A 88 0A 115 -2,-0.3 2,-0.5 82,-0.2 82,-0.2 -0.801 13.5-157.9-104.9 145.1 1.0 3.6 -10.1 7 161 A I E -A 87 0A 4 80,-2.7 80,-2.7 -2,-0.3 2,-0.4 -0.964 6.6-152.4-125.4 116.7 1.1 5.2 -6.6 8 162 A K E -A 86 0A 100 41,-0.5 2,-0.5 -2,-0.5 78,-0.2 -0.733 10.3-169.1 -90.7 131.5 4.0 7.3 -5.5 9 163 A L E -A 85 0A 0 76,-2.3 76,-3.0 -2,-0.4 2,-0.4 -0.974 11.2-144.9-121.2 128.4 4.9 7.5 -1.8 10 164 A I E -A 84 0A 46 -2,-0.5 2,-2.1 6,-0.3 74,-0.2 -0.783 13.4-134.1 -97.2 134.2 7.3 10.0 -0.4 11 165 A K + 0 0 57 72,-2.3 5,-0.2 -2,-0.4 73,-0.1 -0.332 51.1 154.3 -80.2 57.0 9.6 9.1 2.5 12 166 A G B > -F 15 0B 35 -2,-2.1 3,-1.0 3,-0.9 33,-0.1 0.321 67.4 -64.1 -66.0-156.0 8.8 12.3 4.4 13 167 A P T 3 S+ 0 0 146 0, 0.0 3,-0.1 0, 0.0 -1,-0.1 0.747 139.9 48.4 -67.5 -23.0 9.1 12.8 8.2 14 168 A K T > S- 0 0 154 1,-0.3 3,-0.7 30,-0.1 2,-0.5 0.477 106.6-135.1 -94.8 -4.5 6.3 10.3 8.6 15 169 A G B < S+F 12 0B 19 -3,-1.0 -3,-0.9 1,-0.2 -1,-0.3 -0.752 76.1 2.6 92.1-130.8 7.8 7.7 6.3 16 170 A L T 3 S- 0 0 22 -2,-0.5 30,-0.6 -5,-0.2 -6,-0.3 0.863 91.1-131.1 -62.4 -36.5 5.6 6.0 3.8 17 171 A G S < S+ 0 0 2 -3,-0.7 24,-2.2 1,-0.3 30,-0.7 0.744 73.2 39.8 90.3 26.6 2.6 8.1 4.9 18 172 A F E S-B 40 0A 21 22,-0.3 -1,-0.3 -4,-0.2 2,-0.3 -0.946 77.4 -98.5-174.6-168.2 0.1 5.3 5.3 19 173 A S E -B 39 0A 45 20,-2.8 19,-1.1 -2,-0.3 20,-0.6 -0.925 21.5-146.6-134.7 159.0 -0.5 1.7 6.5 20 174 A I E -B 37 0A 8 -2,-0.3 2,-0.4 17,-0.2 17,-0.2 -0.860 5.4-143.6-124.7 160.5 -0.7 -1.8 4.9 21 175 A A E -B 36 0A 2 15,-2.5 15,-1.7 -2,-0.3 2,-0.5 -0.975 13.0-144.8-125.0 137.3 -2.7 -4.9 5.5 22 176 A G E -B 35 0A 1 4,-0.5 6,-0.7 -2,-0.4 49,-0.2 -0.889 12.9-170.6-110.2 129.9 -1.4 -8.5 5.1 23 177 A G + 0 0 1 11,-2.1 2,-0.6 -2,-0.5 4,-0.4 0.703 68.1 83.3 -84.1 -22.7 -3.5 -11.3 3.9 24 178 A V B S-g 70 0C 44 45,-0.7 2,-1.9 9,-0.2 47,-0.5 -0.755 116.3 -25.5 -90.0 118.6 -0.9 -14.0 4.6 25 179 A G S S+ 0 0 70 -2,-0.6 2,-0.2 45,-0.2 -1,-0.1 -0.334 144.2 49.6 81.9 -57.1 -0.8 -15.3 8.2 26 180 A N S S- 0 0 116 -2,-1.9 -4,-0.5 7,-0.0 -2,-0.2 -0.424 87.3-164.2-110.4 52.7 -2.2 -12.1 9.6 27 181 A Q + 0 0 105 -4,-0.4 -4,-0.3 -2,-0.2 6,-0.1 -0.143 23.5 165.5 -44.8 116.2 -5.1 -11.9 7.3 28 182 A H + 0 0 100 -6,-0.7 -1,-0.2 4,-0.2 -5,-0.2 0.661 61.5 70.7-103.9 -27.8 -6.6 -8.4 7.4 29 183 A I S > S- 0 0 22 3,-0.5 2,-2.1 5,-0.2 3,-0.9 -0.828 89.7-121.7 -96.4 123.4 -8.7 -8.7 4.2 30 184 A P T 3 S+ 0 0 134 0, 0.0 -1,-0.0 0, 0.0 -7,-0.0 -0.378 99.9 2.2 -64.6 81.5 -11.7 -11.1 4.5 31 185 A G T 3 S+ 0 0 60 -2,-2.1 2,-0.2 1,-0.3 -8,-0.1 0.827 108.6 95.3 106.3 55.3 -10.7 -13.5 1.7 32 186 A D < - 0 0 54 -3,-0.9 -3,-0.5 -9,-0.2 -1,-0.3 -0.808 47.3-162.3-173.4 129.1 -7.3 -12.4 0.3 33 187 A N S S+ 0 0 96 -2,-0.2 -9,-0.2 34,-0.1 36,-0.2 -0.043 72.2 85.6-103.7 29.5 -3.7 -13.3 0.9 34 188 A S S S- 0 0 32 -11,-0.2 -11,-2.1 34,-0.1 2,-0.4 -0.257 86.6 -77.5-111.0-160.9 -2.4 -10.1 -0.7 35 189 A I E +BC 22 58A 0 23,-0.7 23,-1.7 -13,-0.2 2,-0.3 -0.897 43.6 174.5-110.8 136.6 -1.7 -6.6 0.5 36 190 A Y E -BC 21 57A 42 -15,-1.7 -15,-2.5 -2,-0.4 2,-0.2 -0.951 34.0-104.8-135.5 154.1 -4.4 -3.9 1.0 37 191 A V E +B 20 0A 2 19,-2.2 18,-0.5 -2,-0.3 -17,-0.2 -0.563 34.2 169.7 -80.9 142.2 -4.3 -0.4 2.5 38 192 A T E + 0 0 45 -19,-1.1 2,-0.3 1,-0.3 -18,-0.2 0.589 63.6 18.4-124.0 -24.1 -5.7 0.1 6.0 39 193 A K E -B 19 0A 126 -20,-0.6 -20,-2.8 14,-0.1 2,-0.4 -0.974 56.1-160.0-155.4 138.5 -4.7 3.7 6.9 40 194 A I E -B 18 0A 27 -2,-0.3 2,-0.5 -22,-0.3 -22,-0.3 -0.963 23.1-125.7-121.3 135.1 -3.6 6.9 5.2 41 195 A I > - 0 0 51 -24,-2.2 3,-2.9 -2,-0.4 6,-0.4 -0.670 44.9 -94.6 -81.9 123.6 -1.8 9.8 6.8 42 196 A E T 3 S- 0 0 187 -2,-0.5 -1,-0.1 1,-0.3 -24,-0.0 -0.085 94.7 -38.4 -39.5 92.6 -3.7 13.1 6.1 43 197 A G T 3 S+ 0 0 30 -2,-0.3 -1,-0.3 -26,-0.1 -2,-0.0 0.754 104.4 135.9 54.6 26.1 -1.8 14.3 3.0 44 198 A G S < S- 0 0 41 -3,-2.9 -2,-0.1 -27,-0.3 -27,-0.1 1.000 81.1 -64.6 -65.3 -69.2 1.4 12.9 4.6 45 199 A A S >>S+ 0 0 3 -28,-0.5 4,-2.4 -4,-0.3 5,-1.3 0.342 130.1 43.7-148.5 -59.3 3.0 11.2 1.6 46 200 A A I 4>S+ 0 0 0 -30,-0.6 6,-1.1 3,-0.2 5,-1.1 0.912 120.4 44.2 -64.0 -43.8 0.9 8.2 0.4 47 201 A H I >5S+ 0 0 78 -30,-0.7 4,-0.7 -6,-0.4 -1,-0.2 0.967 125.3 30.7 -66.1 -55.8 -2.3 10.1 0.6 48 202 A K I 45S+ 0 0 163 -7,-0.3 -2,-0.2 2,-0.2 -1,-0.1 0.958 135.9 27.7 -69.4 -52.8 -1.1 13.4 -0.9 49 203 A D I <5S+ 0 0 59 -4,-2.4 -41,-0.5 1,-0.1 -3,-0.2 0.933 133.7 33.3 -75.0 -50.6 1.5 11.9 -3.3 50 204 A G I 4 - 0 0 130 -2,-0.4 3,-1.7 -3,-0.1 2,-0.3 -0.786 40.7 -69.1-123.0 167.2 -7.3 5.4 0.2 54 208 A I T 3 S+ 0 0 98 -2,-0.3 -16,-0.1 1,-0.2 3,-0.1 -0.368 117.4 46.8 -58.1 116.1 -8.4 2.5 2.4 55 209 A G T 3 S+ 0 0 49 -18,-0.5 -1,-0.2 1,-0.5 2,-0.2 0.150 78.6 118.8 136.3 -17.9 -9.6 -0.2 -0.0 56 210 A D < - 0 0 8 -3,-1.7 -19,-2.2 35,-0.1 2,-0.5 -0.483 54.0-138.6 -78.9 149.2 -6.8 -0.3 -2.6 57 211 A K E -C 36 0A 52 33,-0.2 33,-0.6 -21,-0.2 2,-0.6 -0.932 8.6-140.0-112.9 128.9 -4.8 -3.5 -3.2 58 212 A I E +CD 35 89A 2 -23,-1.7 -23,-0.7 -2,-0.5 31,-0.2 -0.759 20.1 177.3 -90.1 121.6 -1.0 -3.3 -3.8 59 213 A L E - 0 0 40 29,-3.6 2,-0.2 -2,-0.6 8,-0.2 0.374 69.0 -20.8-101.7 2.5 0.3 -5.7 -6.4 60 214 A A E - D 0 88A 18 28,-0.5 28,-3.4 6,-0.2 2,-0.4 -0.792 53.5-130.9 163.8 155.8 4.0 -4.6 -6.2 61 215 A V E > S-ED 64 87A 0 3,-3.1 3,-3.7 26,-0.3 2,-1.7 -0.977 72.0 -50.4-132.1 118.6 6.3 -1.7 -5.1 62 216 A N T 3 S- 0 0 49 24,-3.4 25,-0.0 -2,-0.4 23,-0.0 -0.355 126.3 -27.0 58.1 -85.6 9.0 -0.3 -7.3 63 217 A S T 3 S+ 0 0 128 -2,-1.7 2,-0.4 24,-0.0 -1,-0.3 0.152 118.8 100.4-141.2 14.3 10.5 -3.8 -8.1 64 218 A V B < -E 61 0A 53 -3,-3.7 -3,-3.1 13,-0.1 2,-1.0 -0.862 63.7-138.3-109.2 140.4 9.4 -5.7 -5.0 65 219 A G + 0 0 36 -2,-0.4 3,-0.3 -5,-0.2 -5,-0.1 -0.775 30.9 162.1-100.7 94.6 6.5 -8.1 -4.7 66 220 A L + 0 0 1 -2,-1.0 -6,-0.2 1,-0.2 -8,-0.1 -0.299 56.8 88.6-102.3 44.7 4.8 -7.6 -1.4 67 221 A E S S+ 0 0 71 -8,-0.2 -1,-0.2 -33,-0.1 -34,-0.1 0.019 82.9 48.7-130.0 25.6 1.6 -9.3 -2.6 68 222 A D S S+ 0 0 113 -3,-0.3 2,-0.3 2,-0.1 -34,-0.1 -0.035 101.5 64.3-154.7 33.4 2.4 -12.9 -1.6 69 223 A V S S- 0 0 22 -36,-0.2 -45,-0.7 -3,-0.1 -46,-0.4 -0.952 87.1 -75.4-152.8 166.9 3.6 -12.6 2.0 70 224 A M B > -g 24 0C 95 -2,-0.3 4,-2.0 -47,-0.2 5,-0.2 -0.044 50.3 -98.2 -62.7 170.5 2.3 -11.6 5.4 71 225 A H H > S+ 0 0 62 -47,-0.5 4,-1.7 -49,-0.2 -1,-0.1 0.823 121.6 56.1 -57.5 -36.3 1.7 -8.0 6.5 72 226 A E H > S+ 0 0 135 2,-0.2 4,-1.6 1,-0.2 -1,-0.2 0.956 108.3 43.3 -65.2 -52.6 5.2 -8.0 8.3 73 227 A D H > S+ 0 0 97 1,-0.2 4,-1.5 2,-0.2 -1,-0.2 0.870 110.8 57.9 -62.0 -35.2 7.3 -9.0 5.3 74 228 A A H X S+ 0 0 0 -4,-2.0 4,-1.7 1,-0.2 -1,-0.2 0.898 101.6 55.1 -61.5 -39.1 5.2 -6.5 3.2 75 229 A V H X S+ 0 0 34 -4,-1.7 4,-3.1 1,-0.3 5,-0.3 0.909 105.2 52.9 -59.4 -41.4 6.3 -3.8 5.7 76 230 A A H X S+ 0 0 31 -4,-1.6 4,-2.1 1,-0.2 -1,-0.3 0.842 104.0 57.4 -62.3 -33.2 9.8 -4.7 5.0 77 231 A A H < S+ 0 0 8 -4,-1.5 4,-0.3 2,-0.2 -1,-0.2 0.899 112.9 39.3 -64.2 -41.5 9.1 -4.3 1.3 78 232 A L H >< S+ 0 0 7 -4,-1.7 3,-1.3 2,-0.2 -2,-0.2 0.927 116.7 48.2 -74.0 -48.8 8.0 -0.7 1.8 79 233 A K H 3< S+ 0 0 141 -4,-3.1 -2,-0.2 1,-0.3 -3,-0.2 0.839 103.6 62.7 -61.5 -34.5 10.7 0.2 4.4 80 234 A N T 3< S+ 0 0 123 -4,-2.1 -1,-0.3 -5,-0.3 -2,-0.2 0.701 92.5 85.6 -64.4 -20.2 13.3 -1.2 2.1 81 235 A T S < S- 0 0 16 -3,-1.3 2,-0.1 -4,-0.3 4,-0.1 0.255 74.0-128.8 -66.0-163.0 12.4 1.4 -0.5 82 236 A Y - 0 0 172 2,-0.1 3,-0.1 0, 0.0 -1,-0.1 -0.407 49.3 -41.8-131.0-153.5 13.8 5.0 -0.6 83 237 A D S S+ 0 0 124 1,-0.2 -72,-2.3 -2,-0.1 2,-0.6 0.942 127.6 20.8 -43.2 -77.0 12.6 8.6 -0.8 84 238 A V E S-A 10 0A 61 -74,-0.2 2,-0.5 -73,-0.1 -74,-0.2 -0.872 74.8-175.6-102.9 121.3 9.9 8.1 -3.4 85 239 A V E -A 9 0A 0 -76,-3.0 -76,-2.3 -2,-0.6 2,-0.4 -0.963 12.3-148.9-118.9 124.1 8.5 4.6 -3.8 86 240 A Y E -A 8 0A 113 -2,-0.5 -24,-3.4 -78,-0.2 2,-0.3 -0.746 9.8-159.1 -94.8 138.0 5.9 3.8 -6.5 87 241 A L E -AD 7 61A 1 -80,-2.7 -80,-2.7 -2,-0.4 2,-0.6 -0.872 11.3-136.0-114.8 147.3 3.4 1.0 -5.9 88 242 A K E +AD 6 60A 101 -28,-3.4 -29,-3.6 -2,-0.3 -28,-0.5 -0.907 29.1 171.2-107.8 119.8 1.4 -0.9 -8.6 89 243 A V E -AD 5 58A 0 -84,-2.6 -84,-2.9 -2,-0.6 2,-0.4 -0.958 17.3-156.3-128.8 146.6 -2.3 -1.4 -7.9 90 244 A A E -A 4 0A 8 -33,-0.6 -33,-0.2 -2,-0.3 -86,-0.2 -0.982 10.9-142.4-126.0 132.1 -5.1 -2.7 -10.1 91 245 A K E -A 3 0A 66 -88,-0.7 -88,-1.0 -2,-0.4 2,-0.7 -0.797 19.9-127.1 -94.9 128.6 -8.8 -2.0 -9.7 92 246 A P - 0 0 103 0, 0.0 2,-0.6 0, 0.0 -90,-0.1 -0.634 24.0-160.2 -78.1 111.4 -11.3 -4.9 -10.4 93 247 A S - 0 0 70 -2,-0.7 2,-1.7 -92,-0.1 -2,-0.0 -0.821 12.5-142.3 -96.3 121.6 -13.9 -3.7 -12.9 94 248 A N 0 0 167 -2,-0.6 -1,-0.0 1,-0.2 0, 0.0 -0.582 360.0 360.0 -82.9 81.2 -17.2 -5.7 -13.0 95 249 A A 0 0 158 -2,-1.7 -1,-0.2 0, 0.0 -2,-0.0 0.764 360.0 360.0 58.5 360.0 -17.8 -5.6 -16.7