==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=13-NOV-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 18-JUN-99 1QR9 . COMPND 2 MOLECULE: GP41 ENVELOPE PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; . AUTHOR H.JI,W.SHU,F.T.BURLING,S.B.JIANG,M.LU . 68 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5606.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 59 86.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 2.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 54 79.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A S > 0 0 103 0, 0.0 4,-1.9 0, 0.0 5,-0.2 0.000 360.0 360.0 360.0 96.1 -7.7 28.3 -19.1 2 2 A G H > + 0 0 60 2,-0.2 4,-2.2 1,-0.2 5,-0.1 0.828 360.0 58.6 -74.1 -30.3 -7.9 31.1 -21.6 3 3 A I H > S+ 0 0 101 2,-0.2 4,-1.7 1,-0.2 -1,-0.2 0.894 107.1 44.5 -63.7 -43.5 -4.4 30.0 -22.7 4 4 A V H > S+ 0 0 55 2,-0.2 4,-1.9 1,-0.2 -2,-0.2 0.945 114.4 47.0 -68.6 -49.0 -5.7 26.5 -23.5 5 5 A Q H X S+ 0 0 118 -4,-1.9 4,-1.9 1,-0.2 -2,-0.2 0.892 113.0 52.1 -59.4 -37.2 -8.8 27.6 -25.4 6 6 A Q H X S+ 0 0 89 -4,-2.2 4,-2.0 1,-0.2 -1,-0.2 0.856 105.4 54.0 -66.9 -35.5 -6.5 30.1 -27.1 7 7 A Q H X S+ 0 0 103 -4,-1.7 4,-2.0 2,-0.2 -1,-0.2 0.858 107.2 50.8 -67.1 -34.8 -4.2 27.3 -28.1 8 8 A N H X S+ 0 0 30 -4,-1.9 4,-2.7 2,-0.2 -1,-0.2 0.891 107.1 55.6 -67.5 -38.6 -7.1 25.4 -29.7 9 9 A N H X S+ 0 0 84 -4,-1.9 4,-1.9 1,-0.2 -2,-0.2 0.910 108.7 46.3 -58.4 -45.0 -7.9 28.6 -31.5 10 10 A L H X S+ 0 0 98 -4,-2.0 4,-2.3 2,-0.2 -1,-0.2 0.881 111.6 51.9 -66.3 -38.6 -4.4 28.8 -33.0 11 11 A L H X S+ 0 0 14 -4,-2.0 4,-2.3 1,-0.2 -2,-0.2 0.899 109.0 50.2 -64.6 -40.9 -4.6 25.1 -33.9 12 12 A R H X S+ 0 0 166 -4,-2.7 4,-2.6 2,-0.2 -1,-0.2 0.887 108.7 52.5 -65.4 -37.6 -7.9 25.6 -35.7 13 13 A A H X S+ 0 0 51 -4,-1.9 4,-2.6 2,-0.2 -2,-0.2 0.929 110.3 47.4 -63.0 -45.5 -6.4 28.5 -37.6 14 14 A I H X S+ 0 0 83 -4,-2.3 4,-1.8 1,-0.2 -2,-0.2 0.892 111.5 51.8 -62.4 -39.7 -3.5 26.3 -38.7 15 15 A E H X S+ 0 0 41 -4,-2.3 4,-1.6 2,-0.2 -2,-0.2 0.922 111.5 46.3 -62.5 -44.9 -6.0 23.6 -39.7 16 16 A A H X S+ 0 0 59 -4,-2.6 4,-1.9 1,-0.2 -2,-0.2 0.903 111.5 51.3 -64.9 -41.8 -8.0 26.0 -41.8 17 17 A Q H X S+ 0 0 124 -4,-2.6 4,-2.8 1,-0.2 -1,-0.2 0.824 105.6 56.6 -65.7 -30.7 -4.9 27.4 -43.4 18 18 A Q H X S+ 0 0 12 -4,-1.8 4,-2.4 2,-0.2 -1,-0.2 0.913 106.2 49.7 -66.4 -41.2 -3.8 23.9 -44.3 19 19 A H H X S+ 0 0 130 -4,-1.6 4,-2.0 2,-0.2 -2,-0.2 0.902 111.9 48.7 -62.6 -40.9 -7.1 23.4 -46.1 20 20 A L H X S+ 0 0 112 -4,-1.9 4,-2.4 2,-0.2 -2,-0.2 0.924 110.3 50.9 -64.0 -45.1 -6.5 26.6 -47.9 21 21 A L H X S+ 0 0 95 -4,-2.8 4,-2.5 1,-0.2 -2,-0.2 0.888 109.2 51.4 -59.1 -41.7 -2.9 25.6 -48.8 22 22 A Q H X S+ 0 0 63 -4,-2.4 4,-2.0 2,-0.2 -1,-0.2 0.900 110.8 47.1 -64.3 -41.8 -4.3 22.3 -50.2 23 23 A A H X S+ 0 0 58 -4,-2.0 4,-1.9 2,-0.2 -1,-0.2 0.873 111.6 52.3 -67.5 -36.7 -6.8 24.0 -52.4 24 24 A T H X S+ 0 0 76 -4,-2.4 4,-1.8 2,-0.2 -2,-0.2 0.921 108.3 50.0 -64.9 -43.7 -4.1 26.4 -53.6 25 25 A V H X S+ 0 0 20 -4,-2.5 4,-2.2 1,-0.2 -2,-0.2 0.900 108.4 53.7 -61.6 -40.6 -1.8 23.5 -54.5 26 26 A W H X S+ 0 0 161 -4,-2.0 4,-2.1 1,-0.2 -1,-0.2 0.893 104.4 55.6 -61.1 -39.7 -4.7 21.9 -56.4 27 27 A G H X S+ 0 0 32 -4,-1.9 4,-1.5 1,-0.2 -1,-0.2 0.921 108.3 47.7 -59.2 -43.8 -5.1 25.2 -58.3 28 28 A I H X S+ 0 0 68 -4,-1.8 4,-2.5 1,-0.2 -1,-0.2 0.900 107.9 55.6 -64.5 -41.3 -1.5 25.0 -59.4 29 29 A K H X S+ 0 0 55 -4,-2.2 4,-2.2 1,-0.2 -1,-0.2 0.899 105.6 51.7 -58.7 -42.1 -1.8 21.3 -60.4 30 30 A Q H X S+ 0 0 57 -4,-2.1 4,-1.4 1,-0.2 -1,-0.2 0.887 110.2 49.3 -62.7 -38.7 -4.7 22.2 -62.8 31 31 A L H X S+ 0 0 111 -4,-1.5 4,-1.2 1,-0.2 -2,-0.2 0.912 109.6 51.0 -66.4 -42.7 -2.6 24.9 -64.4 32 32 A Q H <>S+ 0 0 22 -4,-2.5 5,-1.4 1,-0.2 -2,-0.2 0.872 104.5 58.9 -61.5 -37.8 0.3 22.5 -64.8 33 33 A A H <5S+ 0 0 51 -4,-2.2 3,-0.4 -5,-0.2 4,-0.3 0.879 113.4 37.4 -59.6 -41.9 -2.1 20.0 -66.4 34 34 A R H <5S+ 0 0 175 -4,-1.4 2,-2.5 1,-0.2 3,-0.5 0.911 118.3 49.1 -65.0 -88.5 -2.9 22.6 -69.1 35 35 A S T <5S- 0 0 91 -4,-1.2 -1,-0.2 1,-0.2 -2,-0.1 -0.205 137.1 -25.7 -52.4 60.7 0.5 24.1 -69.5 36 36 A G T 5S- 0 0 77 -2,-2.5 4,-0.2 -3,-0.4 -1,-0.2 0.366 91.2 -97.9 119.2 -10.1 2.9 21.1 -69.9 37 37 A G < - 0 0 30 -5,-1.4 -3,-0.1 -3,-0.5 3,-0.0 -0.237 36.0 -94.7 86.4 178.6 1.4 18.0 -68.3 38 38 A R S > S+ 0 0 63 -5,-0.1 3,-1.6 1,-0.1 -1,-0.1 0.387 92.5 98.9-118.7 4.8 2.3 16.7 -64.8 39 39 A G G > S+ 0 0 51 1,-0.3 3,-1.0 -3,-0.2 -1,-0.1 0.887 84.9 51.2 -58.5 -41.0 5.0 14.2 -65.5 40 40 A G G 3 S+ 0 0 73 1,-0.2 -1,-0.3 -4,-0.2 3,-0.2 0.485 101.6 65.9 -77.1 0.9 7.8 16.6 -64.6 41 41 A W G <> + 0 0 107 -3,-1.6 4,-2.7 1,-0.1 -1,-0.2 0.228 63.8 105.3-107.5 15.3 6.1 17.4 -61.3 42 42 A M H <> S+ 0 0 126 -3,-1.0 4,-2.0 1,-0.2 -1,-0.1 0.892 84.4 44.9 -61.6 -43.6 6.4 14.1 -59.5 43 43 A E H > S+ 0 0 134 2,-0.2 4,-2.2 -3,-0.2 -1,-0.2 0.872 113.2 50.9 -69.8 -36.3 9.1 15.2 -57.1 44 44 A W H > S+ 0 0 63 2,-0.2 4,-2.5 1,-0.2 5,-0.2 0.940 109.7 50.8 -64.7 -45.5 7.3 18.5 -56.4 45 45 A D H X S+ 0 0 25 -4,-2.7 4,-3.0 1,-0.2 5,-0.2 0.908 109.6 51.8 -56.3 -43.5 4.2 16.5 -55.6 46 46 A R H X S+ 0 0 142 -4,-2.0 4,-2.5 2,-0.2 -1,-0.2 0.893 108.9 49.0 -61.9 -42.8 6.3 14.4 -53.3 47 47 A E H X S+ 0 0 95 -4,-2.2 4,-2.3 2,-0.2 -2,-0.2 0.934 114.9 44.5 -64.0 -46.1 7.7 17.4 -51.5 48 48 A I H X S+ 0 0 40 -4,-2.5 4,-2.2 2,-0.2 -2,-0.2 0.936 114.6 48.6 -63.2 -47.5 4.2 18.9 -51.0 49 49 A N H X S+ 0 0 80 -4,-3.0 4,-2.0 -5,-0.2 -1,-0.2 0.890 111.4 51.0 -60.2 -40.4 2.7 15.6 -50.0 50 50 A N H X S+ 0 0 72 -4,-2.5 4,-2.2 -5,-0.2 -1,-0.2 0.917 110.5 47.4 -65.1 -43.2 5.5 15.1 -47.5 51 51 A Y H X S+ 0 0 132 -4,-2.3 4,-2.3 1,-0.2 -1,-0.2 0.851 110.5 53.9 -67.1 -31.3 5.0 18.5 -45.9 52 52 A T H X S+ 0 0 24 -4,-2.2 4,-2.8 2,-0.2 -1,-0.2 0.879 108.1 48.9 -68.4 -38.9 1.3 17.8 -45.8 53 53 A S H X S+ 0 0 72 -4,-2.0 4,-2.2 2,-0.2 -2,-0.2 0.901 110.8 51.4 -66.5 -40.1 1.9 14.6 -43.9 54 54 A L H X S+ 0 0 98 -4,-2.2 4,-1.8 2,-0.2 -2,-0.2 0.917 113.2 44.5 -62.6 -44.0 4.2 16.5 -41.6 55 55 A I H X S+ 0 0 45 -4,-2.3 4,-2.1 2,-0.2 -2,-0.2 0.931 111.9 50.3 -67.6 -46.8 1.6 19.1 -40.9 56 56 A H H X S+ 0 0 90 -4,-2.8 4,-2.4 1,-0.2 -1,-0.2 0.899 110.0 54.5 -56.6 -40.4 -1.3 16.6 -40.5 57 57 A S H X S+ 0 0 70 -4,-2.2 4,-2.3 1,-0.2 -1,-0.2 0.907 107.5 47.8 -59.7 -45.3 1.0 14.8 -38.0 58 58 A L H X S+ 0 0 99 -4,-1.8 4,-2.1 2,-0.2 -1,-0.2 0.825 109.5 53.4 -68.2 -31.7 1.6 17.9 -36.0 59 59 A I H X S+ 0 0 20 -4,-2.1 4,-2.4 2,-0.2 -2,-0.2 0.949 111.1 45.6 -67.3 -47.6 -2.2 18.6 -35.9 60 60 A E H X S+ 0 0 97 -4,-2.4 4,-3.1 1,-0.2 -2,-0.2 0.887 110.9 54.2 -60.4 -40.8 -2.8 15.1 -34.5 61 61 A E H X S+ 0 0 114 -4,-2.3 4,-2.3 2,-0.2 -1,-0.2 0.919 109.5 47.5 -59.5 -44.8 0.0 15.5 -32.1 62 62 A S H X S+ 0 0 49 -4,-2.1 4,-1.2 2,-0.2 -2,-0.2 0.895 114.7 45.5 -63.3 -42.9 -1.6 18.7 -30.8 63 63 A Q H X S+ 0 0 82 -4,-2.4 4,-2.3 2,-0.2 -2,-0.2 0.887 111.3 54.3 -68.4 -38.2 -5.0 17.1 -30.5 64 64 A N H < S+ 0 0 85 -4,-3.1 -2,-0.2 1,-0.2 -1,-0.2 0.918 113.6 39.7 -61.5 -45.9 -3.4 14.0 -28.9 65 65 A Q H < S+ 0 0 139 -4,-2.3 -1,-0.2 1,-0.2 -2,-0.2 0.671 112.0 57.9 -78.3 -18.9 -1.7 16.1 -26.1 66 66 A Q H < S+ 0 0 89 -4,-1.2 2,-1.5 -5,-0.2 -2,-0.2 0.929 93.3 78.4 -69.3 -49.6 -4.8 18.3 -25.8 67 67 A E < 0 0 121 -4,-2.3 -1,-0.2 -5,-0.1 -4,-0.0 -0.477 360.0 360.0 -70.1 80.9 -6.8 15.2 -25.1 68 68 A K 0 0 234 -2,-1.5 -3,-0.1 -3,-0.1 -4,-0.0 -0.739 360.0 360.0 86.0 360.0 -6.1 14.3 -21.4