==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=11-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN, TRANSFERASE 06-OCT-03 1R4G . COMPND 2 MOLECULE: RNA POLYMERASE ALPHA SUBUNIT; . SOURCE 2 ORGANISM_SCIENTIFIC: SENDAI VIRUS (STRAIN HARRIS); . AUTHOR L.BLANCHARD,N.TARBOURIECH,M.BLACKLEDGE,P.TIMMINS, . 53 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4313.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 38 71.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 3.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 7.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 31 58.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 516 A K 0 0 239 0, 0.0 2,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -59.1 9.4 8.8 11.9 2 517 A P - 0 0 117 0, 0.0 2,-0.3 0, 0.0 3,-0.0 -0.313 360.0-175.6 -69.2 158.8 6.7 6.9 9.9 3 518 A T > - 0 0 76 1,-0.1 4,-1.1 -2,-0.0 0, 0.0 -0.923 42.9-108.1-148.0 173.1 6.5 7.5 6.1 4 519 A M H > S+ 0 0 88 -2,-0.3 4,-1.9 1,-0.2 5,-0.1 0.806 118.7 58.4 -72.4 -30.4 4.5 6.7 3.0 5 520 A H H > S+ 0 0 127 2,-0.2 4,-2.0 1,-0.2 -1,-0.2 0.837 99.6 55.4 -67.6 -37.4 7.4 4.5 1.9 6 521 A S H > S+ 0 0 59 2,-0.2 4,-1.9 1,-0.2 -1,-0.2 0.894 106.6 52.4 -62.7 -39.0 7.0 2.3 5.0 7 522 A L H >X S+ 0 0 32 -4,-1.1 4,-1.6 2,-0.2 3,-0.5 0.964 108.0 49.3 -60.6 -52.8 3.4 1.7 4.1 8 523 A R H 3X S+ 0 0 71 -4,-1.9 4,-2.3 1,-0.3 -1,-0.2 0.887 108.8 55.5 -53.9 -38.3 4.4 0.6 0.6 9 524 A L H 3< S+ 0 0 108 -4,-2.0 -1,-0.3 1,-0.2 -2,-0.2 0.878 100.8 58.0 -62.4 -38.3 6.9 -1.7 2.4 10 525 A V H XX S+ 0 0 55 -4,-1.9 4,-1.8 -3,-0.5 3,-0.5 0.890 108.0 46.1 -59.4 -40.9 4.1 -3.2 4.4 11 526 A I H 3< S+ 0 0 1 -4,-1.6 2,-2.1 1,-0.3 5,-0.4 0.969 111.2 52.0 -66.5 -50.1 2.3 -4.2 1.2 12 527 A E T 3< S+ 0 0 127 -4,-2.3 -1,-0.3 1,-0.2 -2,-0.1 -0.435 113.1 47.5 -84.6 60.5 5.6 -5.6 -0.2 13 528 A S T <4 S+ 0 0 91 -2,-2.1 -1,-0.2 -3,-0.5 -2,-0.2 0.121 89.3 83.8-162.3 -48.6 6.1 -7.7 2.9 14 529 A S S < S- 0 0 38 -4,-1.8 2,-2.6 -3,-0.2 -1,-0.5 -0.383 95.8-101.0 -67.1 149.3 2.7 -9.4 3.6 15 530 A P + 0 0 103 0, 0.0 -1,-0.1 0, 0.0 -3,-0.1 -0.287 67.2 153.1 -73.0 60.5 2.3 -12.7 1.6 16 531 A L - 0 0 31 -2,-2.6 3,-0.0 -5,-0.4 32,-0.0 -0.105 38.5-119.9 -79.7-178.2 0.0 -11.2 -1.1 17 532 A S - 0 0 63 1,-0.1 -1,-0.2 0, 0.0 0, 0.0 0.191 32.0 -92.8-101.4-152.8 -0.4 -12.4 -4.8 18 533 A R S > S+ 0 0 196 3,-0.1 4,-2.7 2,-0.1 5,-0.2 0.793 116.1 39.9 -90.6 -57.2 0.2 -10.6 -8.1 19 534 A A H > S+ 0 0 75 1,-0.2 4,-3.2 2,-0.2 5,-0.2 0.928 118.2 43.4 -60.7 -57.7 -3.2 -9.1 -8.9 20 535 A E H > S+ 0 0 47 2,-0.2 4,-2.5 1,-0.2 5,-0.2 0.834 114.6 52.6 -61.6 -35.2 -4.3 -7.9 -5.4 21 536 A K H > S+ 0 0 60 2,-0.2 4,-3.0 3,-0.2 -2,-0.2 0.972 115.0 40.1 -64.5 -54.9 -0.8 -6.5 -4.7 22 537 A A H X S+ 0 0 37 -4,-2.7 4,-2.7 2,-0.2 5,-0.2 0.959 117.1 48.7 -58.1 -56.0 -0.8 -4.5 -8.0 23 538 A A H X S+ 0 0 59 -4,-3.2 4,-2.2 1,-0.2 -1,-0.2 0.916 116.3 42.6 -51.3 -51.8 -4.5 -3.5 -7.7 24 539 A Y H X S+ 0 0 19 -4,-2.5 4,-2.8 -5,-0.2 5,-0.2 0.954 112.0 53.4 -62.3 -52.1 -4.1 -2.3 -4.1 25 540 A V H X S+ 0 0 32 -4,-3.0 4,-2.8 -5,-0.2 -2,-0.2 0.885 109.9 48.2 -52.0 -43.5 -0.7 -0.6 -4.7 26 541 A K H X S+ 0 0 138 -4,-2.7 4,-1.7 2,-0.2 -1,-0.2 0.952 112.7 48.9 -61.9 -46.7 -2.2 1.4 -7.5 27 542 A S H < S+ 0 0 55 -4,-2.2 -2,-0.2 -5,-0.2 -1,-0.2 0.873 112.0 48.8 -57.9 -40.4 -5.1 2.3 -5.3 28 543 A L H >< S+ 0 0 3 -4,-2.8 3,-1.7 1,-0.2 -1,-0.2 0.913 105.8 56.2 -66.8 -44.0 -2.7 3.3 -2.5 29 544 A S H 3< S+ 0 0 60 -4,-2.8 -1,-0.2 1,-0.3 -2,-0.2 0.850 93.0 72.4 -57.0 -33.1 -0.7 5.4 -5.0 30 545 A K T 3< S+ 0 0 161 -4,-1.7 -1,-0.3 -5,-0.2 -2,-0.2 0.287 77.7 129.1 -66.3 13.0 -4.0 7.2 -5.6 31 546 A C < + 0 0 39 -3,-1.7 3,-0.1 1,-0.1 -3,-0.0 0.093 20.6 152.4 -59.5 177.5 -3.6 8.8 -2.1 32 547 A K + 0 0 163 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.100 64.9 19.4-172.2 -56.6 -3.9 12.6 -1.3 33 548 A T S S- 0 0 85 1,-0.0 -2,-0.0 0, 0.0 0, 0.0 0.609 80.1-110.7 -99.5-112.6 -5.0 13.4 2.2 34 549 A D S > S+ 0 0 121 -3,-0.1 4,-3.0 3,-0.0 5,-0.2 0.287 101.5 57.4-156.9 -55.0 -5.0 11.1 5.3 35 550 A Q H > S+ 0 0 143 2,-0.2 4,-1.8 1,-0.2 5,-0.1 0.840 113.8 46.9 -59.6 -32.7 -8.4 9.9 6.5 36 551 A E H > S+ 0 0 95 2,-0.2 4,-2.1 1,-0.2 5,-0.2 0.973 113.1 45.0 -70.4 -57.8 -9.0 8.6 2.9 37 552 A V H > S+ 0 0 24 1,-0.2 4,-2.0 2,-0.2 -2,-0.2 0.867 112.1 55.9 -55.8 -37.6 -5.6 6.8 2.6 38 553 A K H X S+ 0 0 122 -4,-3.0 4,-2.6 2,-0.2 -1,-0.2 0.935 104.9 50.2 -60.1 -52.5 -6.2 5.5 6.2 39 554 A A H X S+ 0 0 54 -4,-1.8 4,-1.4 1,-0.3 -1,-0.2 0.896 111.3 49.7 -54.7 -39.9 -9.5 3.9 5.2 40 555 A V H X S+ 0 0 41 -4,-2.1 4,-1.4 2,-0.2 -1,-0.3 0.860 108.2 53.4 -67.7 -34.9 -7.6 2.3 2.2 41 556 A M H X S+ 0 0 53 -4,-2.0 4,-1.6 1,-0.2 -2,-0.2 0.912 102.6 57.9 -64.8 -39.6 -5.0 1.1 4.8 42 557 A E H X S+ 0 0 82 -4,-2.6 4,-2.0 1,-0.2 -1,-0.2 0.889 100.7 57.6 -57.8 -37.1 -7.9 -0.5 6.7 43 558 A L H X S+ 0 0 93 -4,-1.4 4,-3.1 1,-0.2 -1,-0.2 0.930 100.2 56.6 -60.3 -45.2 -8.6 -2.4 3.5 44 559 A V H X S+ 0 0 10 -4,-1.4 4,-2.0 1,-0.2 -1,-0.2 0.920 106.0 51.4 -48.9 -50.2 -5.0 -3.8 3.6 45 560 A E H X S+ 0 0 88 -4,-1.6 4,-1.9 1,-0.2 -1,-0.2 0.943 113.6 42.9 -53.7 -52.4 -5.7 -5.2 7.1 46 561 A E H X S+ 0 0 97 -4,-2.0 4,-1.0 1,-0.2 -1,-0.2 0.907 107.8 60.9 -60.6 -43.3 -9.0 -6.9 5.9 47 562 A D H >X S+ 0 0 45 -4,-3.1 4,-3.0 1,-0.2 3,-0.8 0.903 107.2 44.6 -53.6 -45.6 -7.3 -8.2 2.7 48 563 A I H 3X S+ 0 0 35 -4,-2.0 4,-3.2 1,-0.3 5,-0.3 0.937 110.1 53.2 -65.9 -48.2 -4.8 -10.2 4.7 49 564 A E H 3< S+ 0 0 131 -4,-1.9 4,-0.3 -5,-0.2 -1,-0.3 0.636 115.1 44.8 -61.8 -11.8 -7.4 -11.6 7.1 50 565 A S H << S+ 0 0 72 -4,-1.0 -2,-0.2 -3,-0.8 -1,-0.2 0.865 113.3 45.7 -95.2 -52.2 -9.3 -12.7 4.0 51 566 A L H < S+ 0 0 75 -4,-3.0 -2,-0.2 1,-0.2 -3,-0.2 0.886 123.5 38.4 -57.2 -40.2 -6.4 -14.1 2.0 52 567 A T < 0 0 90 -4,-3.2 -1,-0.2 -5,-0.2 -3,-0.2 0.764 360.0 360.0 -81.7 -29.2 -5.3 -15.9 5.2 53 568 A N 0 0 187 -5,-0.3 -1,-0.2 -4,-0.3 -2,-0.1 -0.546 360.0 360.0 65.5 360.0 -8.9 -16.7 6.4