==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-OCT-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RIBOSOMAL PROTEIN 27-MAR-11 3RA6 . COMPND 2 MOLECULE: 50S RIBOSOMAL PROTEIN L30E; . SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS CELER; . AUTHOR C.H.CHAN,T.H.YU,K.B.WONG . 98 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5629.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 68 69.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 5 5.1 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 11 11.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 4.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 8.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 33 33.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 3.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 0 A M 0 0 225 0, 0.0 2,-0.2 0, 0.0 95,-0.0 0.000 360.0 360.0 360.0 134.1 -5.9 -318.0 17.1 2 1 A V - 0 0 24 94,-0.1 2,-1.1 1,-0.1 3,-0.1 -0.469 360.0-138.3 -77.6 135.8 -2.7 -316.7 15.6 3 2 A D > - 0 0 94 -2,-0.2 4,-3.1 1,-0.2 5,-0.4 -0.799 20.4-165.3 -91.9 96.4 -0.7 -313.8 17.2 4 3 A F H > S+ 0 0 26 -2,-1.1 4,-2.9 1,-0.2 5,-0.3 0.912 81.8 41.9 -51.1 -55.8 0.1 -311.8 14.1 5 4 A A H > S+ 0 0 43 2,-0.2 4,-2.1 1,-0.2 -1,-0.2 0.895 117.8 46.5 -66.1 -42.6 2.8 -309.6 15.5 6 5 A F H > S+ 0 0 107 2,-0.2 4,-3.1 1,-0.2 -1,-0.2 0.971 117.6 41.7 -61.0 -53.4 4.5 -312.4 17.5 7 6 A E H X S+ 0 0 14 -4,-3.1 4,-2.2 2,-0.2 87,-0.3 0.831 113.0 53.5 -69.6 -33.2 4.5 -314.9 14.6 8 7 A L H X S+ 0 0 1 -4,-2.9 4,-2.1 -5,-0.4 -1,-0.2 0.948 114.6 41.4 -61.7 -48.8 5.5 -312.3 12.0 9 8 A R H X S+ 0 0 157 -4,-2.1 4,-2.0 -5,-0.3 -2,-0.2 0.908 113.4 53.8 -66.3 -40.3 8.5 -311.3 14.1 10 9 A K H X S+ 0 0 64 -4,-3.1 4,-2.1 1,-0.2 81,-0.4 0.880 110.5 46.9 -61.8 -36.2 9.2 -315.0 14.9 11 10 A A H X S+ 0 0 0 -4,-2.2 4,-1.5 1,-0.2 -1,-0.2 0.843 110.3 52.8 -73.5 -33.7 9.2 -315.7 11.2 12 11 A Q H < S+ 0 0 50 -4,-2.1 5,-0.2 -5,-0.2 -2,-0.2 0.845 116.5 40.3 -65.1 -32.7 11.4 -312.7 10.6 13 12 A D H < S+ 0 0 114 -4,-2.0 -2,-0.2 -5,-0.1 -1,-0.2 0.781 128.2 26.1 -89.7 -30.5 13.8 -314.1 13.2 14 13 A T H < S+ 0 0 52 -4,-2.1 -3,-0.2 -5,-0.2 -2,-0.2 0.470 127.4 23.4-114.3 -4.4 13.9 -317.8 12.5 15 14 A G S < S- 0 0 26 -4,-1.5 2,-0.4 -5,-0.2 -3,-0.1 -0.162 92.2 -73.7-130.1-140.1 13.0 -317.9 8.8 16 15 A K E +A 88 0A 102 72,-3.1 71,-2.1 -2,-0.1 72,-2.1 -0.942 38.6 171.6-142.0 119.2 13.1 -315.7 5.8 17 16 A I E -A 86 0A 25 -2,-0.4 2,-0.4 69,-0.2 69,-0.2 -0.959 16.0-155.0-119.3 138.7 10.9 -312.7 5.0 18 17 A V E -A 85 0A 10 67,-2.4 67,-2.9 -2,-0.4 2,-0.3 -0.961 17.4-143.7-115.0 139.3 11.4 -310.2 2.1 19 18 A M E +A 84 0A 31 -2,-0.4 4,-0.3 65,-0.2 65,-0.2 -0.748 47.1 38.3-109.1 146.2 10.1 -306.7 2.4 20 19 A G S > S- 0 0 25 63,-2.9 4,-1.7 -2,-0.3 5,-0.1 -0.045 81.2 -85.7 106.1 155.3 8.5 -304.2 0.0 21 20 A A H > S+ 0 0 19 1,-0.2 4,-3.0 2,-0.2 5,-0.3 0.921 120.6 54.6 -58.4 -49.4 6.1 -304.3 -3.0 22 21 A R H > S+ 0 0 187 1,-0.2 4,-2.3 2,-0.2 -1,-0.2 0.907 112.8 39.9 -54.6 -51.6 8.9 -305.0 -5.6 23 22 A K H > S+ 0 0 90 -4,-0.3 4,-2.6 2,-0.2 -1,-0.2 0.812 114.3 55.1 -72.1 -29.8 10.3 -308.2 -3.9 24 23 A S H X S+ 0 0 0 -4,-1.7 4,-2.4 2,-0.2 -2,-0.2 0.951 111.0 43.7 -64.2 -51.9 6.8 -309.4 -2.9 25 24 A I H X S+ 0 0 26 -4,-3.0 4,-3.5 2,-0.2 -2,-0.2 0.923 114.7 51.8 -58.0 -44.3 5.6 -309.2 -6.5 26 25 A Q H X S+ 0 0 33 -4,-2.3 4,-2.0 -5,-0.3 -2,-0.2 0.928 113.0 42.3 -58.9 -49.9 8.9 -310.8 -7.6 27 26 A Y H <>S+ 0 0 59 -4,-2.6 5,-1.3 2,-0.2 6,-1.2 0.799 115.8 50.8 -70.9 -30.0 8.6 -313.8 -5.2 28 27 A A H ><5S+ 0 0 0 -4,-2.4 3,-1.4 -5,-0.2 -2,-0.2 0.964 110.1 50.0 -65.0 -53.6 4.9 -314.1 -6.0 29 28 A K H 3<5S+ 0 0 131 -4,-3.5 -2,-0.2 1,-0.3 -1,-0.2 0.843 115.0 43.6 -53.3 -38.7 5.7 -314.1 -9.7 30 29 A M T 3<5S- 0 0 118 -4,-2.0 -1,-0.3 -5,-0.2 -2,-0.2 0.408 109.7-115.1 -95.4 1.5 8.3 -316.8 -9.3 31 30 A G T < 5S+ 0 0 44 -3,-1.4 -3,-0.2 -4,-0.5 -4,-0.1 0.562 81.9 117.5 80.1 8.5 6.5 -319.1 -6.9 32 31 A G < + 0 0 26 -5,-1.3 2,-0.3 -6,-0.2 -4,-0.2 0.552 50.5 79.5 -90.3 -11.0 9.0 -318.6 -4.1 33 32 A A - 0 0 5 -6,-1.2 54,-0.2 -9,-0.1 3,-0.1 -0.711 53.8-164.5 -92.0 151.9 6.7 -317.0 -1.4 34 33 A K S S+ 0 0 109 52,-3.0 2,-0.3 1,-0.4 53,-0.2 0.515 79.9 12.4-106.1 -12.4 4.4 -319.1 0.8 35 34 A L E -B 86 0A 0 51,-0.8 51,-2.7 24,-0.1 2,-0.4 -0.934 62.3-152.0-162.7 136.6 2.4 -316.1 1.9 36 35 A I E -Bc 85 61A 0 24,-2.3 26,-3.5 -2,-0.3 2,-0.4 -0.959 10.4-162.3-113.3 134.5 2.1 -312.4 1.0 37 36 A I E -Bc 84 62A 0 47,-2.8 47,-2.3 -2,-0.4 2,-0.4 -0.959 8.4-171.7-114.3 130.9 1.1 -309.8 3.5 38 37 A V E -Bc 83 63A 18 24,-2.4 26,-1.6 -2,-0.4 45,-0.3 -0.986 20.7-126.1-128.0 130.6 -0.3 -306.4 2.4 39 38 A A E > - c 0 64A 3 43,-2.5 3,-1.7 -2,-0.4 28,-0.2 -0.342 30.4-111.3 -69.9 156.5 -1.0 -303.3 4.4 40 39 A R T 3 S+ 0 0 168 26,-2.5 27,-0.2 24,-0.6 -1,-0.1 0.759 115.5 46.4 -62.9 -26.1 -4.5 -301.8 4.1 41 40 A N T 3 S+ 0 0 87 25,-0.4 -1,-0.3 2,-0.0 26,-0.1 0.097 75.7 140.9-107.7 20.7 -3.1 -298.7 2.4 42 41 A A S < S- 0 0 13 -3,-1.7 5,-0.1 40,-0.2 -4,-0.0 -0.306 74.6 -83.5 -51.3 146.3 -0.9 -300.4 -0.2 43 42 A R >> - 0 0 154 1,-0.2 4,-2.3 2,-0.1 3,-1.1 -0.404 44.3-124.3 -55.9 129.5 -1.1 -298.6 -3.5 44 43 A P H 3> S+ 0 0 84 0, 0.0 4,-1.8 0, 0.0 -1,-0.2 0.763 108.8 49.4 -55.3 -30.1 -4.3 -300.1 -5.0 45 44 A D H 3> S+ 0 0 69 2,-0.2 4,-2.1 1,-0.2 5,-0.1 0.789 110.6 49.8 -80.7 -30.1 -2.4 -301.2 -8.2 46 45 A I H <> S+ 0 0 26 -3,-1.1 4,-2.2 2,-0.2 -1,-0.2 0.845 111.7 49.0 -73.7 -37.7 0.4 -302.8 -6.3 47 46 A A H X S+ 0 0 19 -4,-2.3 4,-2.4 2,-0.2 -2,-0.2 0.898 112.4 48.4 -66.3 -42.0 -2.2 -304.6 -4.1 48 47 A E H X S+ 0 0 123 -4,-1.8 4,-2.4 -5,-0.3 -2,-0.2 0.887 110.1 51.6 -69.0 -37.0 -3.9 -305.8 -7.3 49 48 A D H X S+ 0 0 72 -4,-2.1 4,-2.8 2,-0.2 5,-0.3 0.922 111.4 47.5 -59.2 -48.5 -0.6 -306.9 -8.9 50 49 A I H X S+ 0 0 1 -4,-2.2 4,-3.0 1,-0.2 5,-0.2 0.947 112.1 49.7 -57.7 -48.7 0.2 -309.0 -5.8 51 50 A E H X S+ 0 0 117 -4,-2.4 4,-2.2 1,-0.2 -1,-0.2 0.909 112.7 48.9 -56.0 -44.9 -3.3 -310.5 -5.8 52 51 A Y H X S+ 0 0 126 -4,-2.4 4,-1.6 2,-0.2 -2,-0.2 0.963 115.2 40.3 -61.2 -57.0 -2.9 -311.3 -9.4 53 52 A Y H X S+ 0 0 49 -4,-2.8 4,-1.1 1,-0.2 -2,-0.2 0.846 115.0 54.6 -63.4 -33.1 0.5 -313.0 -9.3 54 53 A A H X>S+ 0 0 2 -4,-3.0 5,-2.7 -5,-0.3 4,-1.7 0.909 107.0 49.7 -63.7 -43.8 -0.4 -314.7 -6.0 55 54 A R H <5S+ 0 0 221 -4,-2.2 -2,-0.2 -5,-0.2 -1,-0.2 0.795 103.0 62.3 -68.4 -31.4 -3.6 -316.2 -7.7 56 55 A L H <5S+ 0 0 107 -4,-1.6 -1,-0.2 1,-0.2 -2,-0.2 0.881 117.3 27.7 -54.5 -41.8 -1.4 -317.4 -10.6 57 56 A S H <5S- 0 0 69 -4,-1.1 -2,-0.2 -3,-0.4 -1,-0.2 0.536 110.1-112.2-103.3 -13.4 0.6 -319.7 -8.2 58 57 A G T <5 + 0 0 64 -4,-1.7 -3,-0.2 1,-0.3 -4,-0.1 0.859 60.4 156.2 81.9 35.8 -1.9 -320.3 -5.5 59 58 A I < - 0 0 19 -5,-2.7 -1,-0.3 -6,-0.2 -24,-0.1 -0.843 43.2-119.7 -95.5 129.6 -0.1 -318.3 -2.9 60 59 A P - 0 0 54 0, 0.0 -24,-2.3 0, 0.0 2,-0.4 -0.390 21.8-149.7 -69.4 147.1 -2.3 -317.1 -0.1 61 60 A V E -c 36 0A 57 -26,-0.2 2,-0.5 37,-0.1 -24,-0.2 -0.975 5.1-157.9-118.8 133.2 -2.6 -313.3 0.5 62 61 A Y E -c 37 0A 65 -26,-3.5 -24,-2.4 -2,-0.4 2,-1.0 -0.945 9.9-144.3-116.1 125.6 -3.2 -311.8 4.0 63 62 A A E -c 38 0A 73 -2,-0.5 2,-0.4 -26,-0.2 -24,-0.2 -0.780 16.4-145.2 -91.0 99.8 -4.7 -308.4 4.4 64 63 A F E -c 39 0A 19 -26,-1.6 2,-1.9 -2,-1.0 -24,-0.6 -0.519 12.5-134.0 -63.9 121.2 -3.1 -306.8 7.4 65 64 A E S S+ 0 0 78 -2,-0.4 2,-0.3 -26,-0.1 -1,-0.1 -0.567 77.4 63.7 -80.3 80.8 -5.7 -304.7 9.1 66 65 A G S S- 0 0 1 -2,-1.9 -26,-2.5 4,-0.0 -25,-0.4 -0.922 86.8 -79.6 169.4 161.4 -3.4 -301.7 9.6 67 66 A T > - 0 0 42 -2,-0.3 4,-2.4 -28,-0.2 5,-0.2 -0.302 40.3-107.4 -83.0 165.3 -1.3 -299.1 7.8 68 67 A S H > S+ 0 0 10 1,-0.2 13,-2.2 2,-0.2 4,-1.8 0.695 121.1 59.7 -61.1 -22.4 2.1 -299.5 6.2 69 68 A V H > S+ 0 0 85 11,-0.2 4,-2.0 2,-0.2 -1,-0.2 0.944 107.9 42.3 -68.4 -50.7 3.4 -297.4 9.1 70 69 A E H > S+ 0 0 92 2,-0.2 4,-2.3 1,-0.2 -2,-0.2 0.883 114.8 51.5 -61.0 -41.8 2.2 -300.0 11.6 71 70 A L H X S+ 0 0 0 -4,-2.4 4,-1.5 2,-0.2 -1,-0.2 0.932 109.2 49.8 -64.1 -45.5 3.4 -302.9 9.5 72 71 A G H <>S+ 0 0 0 -4,-1.8 5,-3.0 9,-0.2 3,-0.2 0.907 110.8 49.9 -58.6 -42.3 6.9 -301.3 9.1 73 72 A T H ><5S+ 0 0 93 -4,-2.0 3,-1.9 1,-0.2 -1,-0.2 0.911 105.8 56.7 -63.4 -40.8 7.1 -300.8 12.9 74 73 A L H 3<5S+ 0 0 59 -4,-2.3 -1,-0.2 1,-0.3 -2,-0.2 0.827 107.7 48.4 -58.6 -34.4 6.0 -304.5 13.4 75 74 A L T 3<5S- 0 0 3 -4,-1.5 -1,-0.3 -3,-0.2 -2,-0.2 0.296 124.0-107.8 -89.5 5.5 9.0 -305.6 11.3 76 75 A G T < 5S+ 0 0 64 -3,-1.9 -3,-0.2 1,-0.3 -2,-0.1 0.586 73.4 138.1 82.8 13.9 11.2 -303.2 13.3 77 76 A R < - 0 0 127 -5,-3.0 -1,-0.3 -6,-0.2 -2,-0.1 -0.653 55.4-143.1 -99.1 148.3 11.7 -300.6 10.6 78 77 A P S S+ 0 0 109 0, 0.0 2,-0.3 0, 0.0 -5,-0.1 0.338 86.2 58.0 -86.1 6.3 11.7 -296.8 10.9 79 78 A H S S- 0 0 141 -7,-0.1 -2,-0.2 1,-0.1 -3,-0.0 -0.826 96.1 -77.0-132.2 170.4 9.9 -296.6 7.6 80 79 A T - 0 0 88 -2,-0.3 2,-0.4 -8,-0.1 -11,-0.2 -0.261 29.4-165.0 -67.9 150.0 6.8 -297.8 5.9 81 80 A V + 0 0 11 -13,-2.2 -9,-0.2 1,-0.1 -10,-0.2 -0.950 8.5 178.7-133.3 113.2 6.3 -301.4 4.6 82 81 A S S S+ 0 0 31 -2,-0.4 -43,-2.5 1,-0.3 2,-0.3 0.674 70.5 0.0 -88.6 -19.7 3.3 -301.7 2.3 83 82 A A E - B 0 38A 0 -45,-0.3 -63,-2.9 -15,-0.1 2,-0.3 -0.980 58.9-176.7-162.5 158.3 3.8 -305.5 1.6 84 83 A L E -AB 19 37A 0 -47,-2.3 -47,-2.8 -2,-0.3 2,-0.4 -0.977 17.0-136.2-153.9 161.0 6.1 -308.4 2.5 85 84 A A E -AB 18 36A 0 -67,-2.9 -67,-2.4 -2,-0.3 2,-0.9 -0.989 10.4-139.7-129.3 130.2 6.5 -312.0 1.5 86 85 A V E +AB 17 35A 0 -51,-2.7 -52,-3.0 -2,-0.4 -51,-0.8 -0.776 26.8 169.0 -85.3 105.2 7.1 -315.0 3.8 87 86 A V E S+ 0 0 25 -71,-2.1 -70,-0.2 -2,-0.9 -1,-0.2 0.880 76.9 11.3 -80.7 -43.1 9.6 -317.2 1.9 88 87 A D E -A 16 0A 71 -72,-2.1 -72,-3.1 -77,-0.1 -1,-0.3 -0.972 64.3-153.9-141.9 118.7 10.4 -319.4 4.9 89 88 A P > - 0 0 24 0, 0.0 3,-2.3 0, 0.0 5,-0.3 0.528 26.0-162.9 -71.1 -6.3 8.2 -319.3 8.1 90 89 A G T 3 - 0 0 29 1,-0.3 -75,-0.2 -76,-0.2 -79,-0.1 -0.407 67.7 -26.4 54.8-127.0 11.1 -320.6 10.3 91 90 A E T 3 S+ 0 0 141 -81,-0.4 -1,-0.3 -3,-0.1 -80,-0.1 0.355 113.9 113.4 -95.9 3.3 9.6 -321.8 13.5 92 91 A S < - 0 0 13 -3,-2.3 3,-0.3 -82,-0.2 -85,-0.1 -0.340 66.5-140.2 -81.3 156.7 6.6 -319.5 13.3 93 92 A R > + 0 0 138 1,-0.2 3,-1.7 -90,-0.1 4,-0.3 0.062 66.7 120.1 -94.2 23.2 2.9 -320.3 12.8 94 93 A I G > + 0 0 0 -87,-0.3 3,-2.3 -5,-0.3 -1,-0.2 0.854 62.7 64.7 -59.4 -38.4 2.5 -317.4 10.5 95 94 A L G > S+ 0 0 58 -3,-0.3 3,-1.9 1,-0.3 -1,-0.3 0.672 83.5 78.3 -62.3 -15.8 1.4 -319.5 7.5 96 95 A A G < S+ 0 0 66 -3,-1.7 -1,-0.3 1,-0.3 -2,-0.2 0.736 75.7 74.7 -61.5 -23.6 -1.7 -320.4 9.6 97 96 A L G < 0 0 38 -3,-2.3 -1,-0.3 -4,-0.3 -2,-0.2 0.601 360.0 360.0 -62.4 -10.2 -3.0 -316.9 8.5 98 97 A G < 0 0 76 -3,-1.9 -2,-0.2 -4,-0.1 -1,-0.2 0.814 360.0 360.0 -96.3 360.0 -3.5 -318.7 5.2