==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=11-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 01-NOV-03 1RB4 . COMPND 2 MOLECULE: GENERAL CONTROL PROTEIN GCN4; . SOURCE 2 SYNTHETIC: YES; . AUTHOR J.HOLTON,T.ALBER . 91 3 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6378.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 80 87.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 79 86.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A R > 0 0 148 0, 0.0 4,-2.0 0, 0.0 5,-0.1 0.000 360.0 360.0 360.0 -45.9 -14.9 35.6 11.7 2 2 A M H > + 0 0 37 1,-0.2 4,-2.9 2,-0.2 5,-0.2 0.907 360.0 47.1 -59.6 -49.5 -14.6 35.4 15.4 3 3 A K H > S+ 0 0 125 1,-0.2 4,-2.6 2,-0.2 -1,-0.2 0.910 112.9 49.5 -62.7 -38.5 -15.7 31.8 15.8 4 4 A Q H > S+ 0 0 126 1,-0.2 4,-2.1 2,-0.2 -1,-0.2 0.859 111.9 49.6 -65.2 -34.6 -13.3 30.7 13.0 5 5 A L H X S+ 0 0 3 -4,-2.0 4,-2.2 2,-0.2 -2,-0.2 0.942 111.4 48.0 -67.4 -50.7 -10.5 32.6 14.7 6 6 A E H X S+ 0 0 57 -4,-2.9 4,-2.6 2,-0.2 5,-0.3 0.908 109.7 53.5 -56.2 -41.8 -11.3 31.0 18.1 7 7 A D H X S+ 0 0 82 -4,-2.6 4,-2.1 1,-0.2 -2,-0.2 0.940 110.1 47.6 -60.1 -42.4 -11.4 27.6 16.4 8 8 A K H X S+ 0 0 71 -4,-2.1 4,-2.3 1,-0.2 -1,-0.2 0.845 109.3 52.6 -67.2 -42.0 -7.9 28.2 14.9 9 9 A V H X S+ 0 0 3 -4,-2.2 4,-2.7 2,-0.2 -1,-0.2 0.911 110.8 47.6 -61.4 -38.7 -6.5 29.4 18.2 10 10 A E H X S+ 0 0 90 -4,-2.6 4,-2.5 1,-0.2 -2,-0.2 0.893 111.3 51.1 -66.4 -41.2 -7.7 26.3 20.0 11 11 A E H X S+ 0 0 84 -4,-2.1 4,-2.1 -5,-0.3 -1,-0.2 0.926 111.1 49.0 -54.5 -52.0 -6.3 24.1 17.2 12 12 A L H X S+ 0 0 0 -4,-2.3 4,-2.8 2,-0.2 5,-0.2 0.935 110.7 48.9 -55.7 -54.7 -3.0 25.9 17.6 13 13 A L H X S+ 0 0 17 -4,-2.7 4,-2.6 1,-0.2 5,-0.2 0.945 109.6 52.0 -59.6 -36.1 -2.9 25.4 21.4 14 14 A S H X S+ 0 0 83 -4,-2.5 4,-2.2 1,-0.2 -1,-0.2 0.903 112.1 47.3 -66.2 -36.9 -3.7 21.7 21.1 15 15 A K H X S+ 0 0 77 -4,-2.1 4,-3.0 2,-0.2 -1,-0.2 0.906 110.3 51.2 -69.3 -38.5 -0.8 21.4 18.6 16 16 A A H X S+ 0 0 0 -4,-2.8 4,-2.5 2,-0.2 -1,-0.2 0.909 111.9 47.2 -64.5 -44.1 1.6 23.3 20.8 17 17 A Y H X S+ 0 0 90 -4,-2.6 4,-2.5 -5,-0.2 -2,-0.2 0.931 111.7 50.7 -63.9 -38.7 0.8 21.1 23.7 18 18 A H H X S+ 0 0 80 -4,-2.2 4,-2.6 1,-0.2 -2,-0.2 0.946 111.6 48.1 -61.8 -47.4 1.2 17.9 21.6 19 19 A L H X S+ 0 0 3 -4,-3.0 4,-2.8 1,-0.2 5,-0.3 0.910 108.5 54.7 -59.0 -42.4 4.6 19.2 20.4 20 20 A E H X S+ 0 0 50 -4,-2.5 4,-2.2 1,-0.2 -2,-0.2 0.954 111.1 45.0 -56.5 -47.9 5.6 19.9 24.0 21 21 A N H X S+ 0 0 84 -4,-2.5 4,-2.2 1,-0.2 -2,-0.2 0.909 113.2 50.2 -64.2 -41.0 4.8 16.3 25.0 22 22 A E H X S+ 0 0 13 -4,-2.6 4,-2.6 2,-0.2 -1,-0.2 0.894 108.9 51.5 -64.2 -38.3 6.6 14.9 21.9 23 23 A V H X S+ 0 0 11 -4,-2.8 4,-2.7 2,-0.2 -1,-0.2 0.894 109.3 51.1 -67.0 -38.5 9.7 17.0 22.6 24 24 A A H X S+ 0 0 59 -4,-2.2 4,-1.8 -5,-0.3 -2,-0.2 0.933 110.6 48.6 -65.7 -39.9 9.8 15.7 26.2 25 25 A R H X S+ 0 0 133 -4,-2.2 4,-1.8 1,-0.2 -2,-0.2 0.946 113.2 46.7 -64.5 -43.8 9.5 12.1 25.0 26 26 A L H X S+ 0 0 2 -4,-2.6 4,-3.3 1,-0.2 -1,-0.2 0.912 107.3 57.1 -65.2 -43.3 12.3 12.6 22.4 27 27 A K H < S+ 0 0 124 -4,-2.7 -1,-0.2 1,-0.2 -2,-0.2 0.910 108.5 47.4 -54.1 -39.4 14.5 14.3 25.0 28 28 A K H < S+ 0 0 182 -4,-1.8 -1,-0.2 2,-0.2 -2,-0.2 0.861 112.2 49.9 -70.4 -37.0 14.3 11.2 27.2 29 29 A L H < 0 0 122 -4,-1.8 -2,-0.2 1,-0.2 -1,-0.2 0.926 360.0 360.0 -66.9 -43.2 15.0 9.0 24.2 30 30 A V < 0 0 113 -4,-3.3 -2,-0.2 -5,-0.1 -1,-0.2 0.861 360.0 360.0 -69.5 360.0 18.1 11.0 23.3 31 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 32 1 B R > 0 0 120 0, 0.0 4,-2.1 0, 0.0 5,-0.2 0.000 360.0 360.0 360.0 -36.4 -7.1 44.1 15.2 33 2 B M H > + 0 0 43 1,-0.2 4,-2.6 2,-0.2 5,-0.2 0.919 360.0 44.1 -65.9 -44.5 -9.1 41.2 13.8 34 3 B K H > S+ 0 0 129 1,-0.2 4,-2.4 2,-0.2 -1,-0.2 0.850 109.8 58.6 -67.0 -32.3 -6.9 40.8 10.7 35 4 B Q H > S+ 0 0 120 2,-0.2 4,-2.0 1,-0.2 -1,-0.2 0.916 111.1 41.5 -62.1 -43.0 -3.8 41.2 12.9 36 5 B L H X S+ 0 0 1 -4,-2.1 4,-2.7 2,-0.2 -2,-0.2 0.882 112.3 53.2 -77.7 -31.3 -4.9 38.2 15.0 37 6 B E H X S+ 0 0 38 -4,-2.6 4,-1.9 2,-0.2 -1,-0.2 0.903 111.2 48.1 -64.8 -43.3 -6.0 36.1 12.0 38 7 B D H X S+ 0 0 76 -4,-2.4 4,-2.5 1,-0.2 -2,-0.2 0.943 111.6 50.4 -63.3 -42.3 -2.5 36.7 10.4 39 8 B K H X S+ 0 0 74 -4,-2.0 4,-2.8 1,-0.2 5,-0.2 0.894 108.2 50.7 -64.0 -44.6 -0.8 35.7 13.7 40 9 B V H X S+ 0 0 1 -4,-2.7 4,-2.3 2,-0.2 -1,-0.2 0.892 111.1 49.2 -66.3 -33.1 -2.8 32.5 14.1 41 10 B E H X S+ 0 0 107 -4,-1.9 4,-2.3 -5,-0.2 -2,-0.2 0.928 111.1 50.0 -70.3 -35.9 -1.9 31.4 10.5 42 11 B E H X S+ 0 0 65 -4,-2.5 4,-2.7 1,-0.2 -2,-0.2 0.956 113.7 45.5 -60.2 -49.6 1.8 32.3 11.1 43 12 B L H X S+ 0 0 0 -4,-2.8 4,-2.9 2,-0.2 -1,-0.2 0.899 110.5 53.2 -64.3 -36.6 1.8 30.2 14.3 44 13 B L H X S+ 0 0 24 -4,-2.3 4,-2.5 -5,-0.2 -1,-0.2 0.919 109.2 49.6 -63.7 -37.1 -0.1 27.3 12.7 45 14 B S H X S+ 0 0 60 -4,-2.3 4,-2.4 2,-0.2 5,-0.2 0.945 111.3 48.1 -66.6 -45.0 2.5 27.2 9.9 46 15 B K H X S+ 0 0 96 -4,-2.7 4,-2.2 1,-0.2 -2,-0.2 0.900 110.9 52.8 -61.4 -41.0 5.3 27.2 12.5 47 16 B A H X S+ 0 0 2 -4,-2.9 4,-2.2 1,-0.2 -1,-0.2 0.908 108.6 49.3 -58.7 -46.7 3.5 24.4 14.4 48 17 B Y H X S+ 0 0 132 -4,-2.5 4,-1.8 1,-0.2 -1,-0.2 0.922 111.7 47.9 -58.5 -47.3 3.2 22.2 11.2 49 18 B H H X S+ 0 0 106 -4,-2.4 4,-1.8 1,-0.2 -1,-0.2 0.858 110.6 51.8 -66.4 -34.0 6.9 22.6 10.4 50 19 B L H X S+ 0 0 18 -4,-2.2 4,-2.7 -5,-0.2 -1,-0.2 0.899 106.9 53.5 -66.8 -37.5 7.9 21.8 14.0 51 20 B E H X S+ 0 0 67 -4,-2.2 4,-2.6 1,-0.2 -1,-0.2 0.893 107.5 51.6 -62.1 -38.3 5.8 18.6 13.8 52 21 B N H X S+ 0 0 54 -4,-1.8 4,-1.9 1,-0.2 -1,-0.2 0.898 110.2 48.8 -64.5 -37.2 7.7 17.7 10.6 53 22 B E H X S+ 0 0 22 -4,-1.8 4,-2.6 2,-0.2 -2,-0.2 0.884 110.6 50.3 -67.6 -42.1 11.0 18.2 12.4 54 23 B V H X S+ 0 0 0 -4,-2.7 4,-2.9 1,-0.2 5,-0.2 0.946 109.5 51.5 -59.9 -47.1 9.8 16.1 15.4 55 24 B A H X S+ 0 0 54 -4,-2.6 4,-1.7 1,-0.2 -1,-0.2 0.870 110.9 48.3 -56.0 -45.4 8.7 13.3 13.0 56 25 B R H X S+ 0 0 125 -4,-1.9 4,-1.9 2,-0.2 -1,-0.2 0.910 113.2 46.5 -63.1 -45.7 12.2 13.3 11.4 57 26 B L H X S+ 0 0 16 -4,-2.6 4,-2.9 1,-0.2 5,-0.2 0.847 108.4 55.6 -69.9 -32.4 14.1 13.3 14.7 58 27 B K H X S+ 0 0 89 -4,-2.9 4,-1.3 1,-0.2 -1,-0.2 0.921 109.5 47.7 -62.6 -41.0 11.9 10.5 16.1 59 28 B K H X S+ 0 0 170 -4,-1.7 4,-0.7 -5,-0.2 -1,-0.2 0.898 111.9 50.6 -62.2 -47.5 12.8 8.4 13.0 60 29 B L H >< S+ 0 0 91 -4,-1.9 3,-1.0 1,-0.2 -2,-0.2 0.935 110.5 46.8 -59.2 -49.1 16.5 9.2 13.4 61 30 B V H 3< S+ 0 0 60 -4,-2.9 -1,-0.2 1,-0.2 -2,-0.2 0.740 113.5 50.0 -72.9 -17.0 16.7 8.2 17.1 62 31 B G H 3< 0 0 67 -4,-1.3 -1,-0.2 -5,-0.2 -2,-0.2 0.559 360.0 360.0 -93.9 -5.0 14.8 5.0 16.6 63 32 B E << 0 0 185 -3,-1.0 -1,-0.1 -4,-0.7 -4,-0.0 -0.370 360.0 360.0 -82.2 360.0 16.7 3.4 13.7 64 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 65 1 C R > 0 0 140 0, 0.0 4,-2.2 0, 0.0 5,-0.2 0.000 360.0 360.0 360.0 -34.7 19.0 20.3 16.6 66 2 C M H > + 0 0 22 2,-0.2 4,-2.4 1,-0.2 5,-0.2 0.924 360.0 47.9 -67.7 -40.8 17.4 19.0 19.8 67 3 C K H > S+ 0 0 122 1,-0.2 4,-1.9 2,-0.2 -1,-0.2 0.920 112.3 48.5 -61.6 -45.0 18.2 22.2 21.7 68 4 C Q H > S+ 0 0 110 2,-0.2 4,-2.6 1,-0.2 -1,-0.2 0.913 110.8 52.6 -63.9 -42.0 16.8 24.4 18.9 69 5 C L H X S+ 0 0 0 -4,-2.2 4,-2.9 2,-0.2 5,-0.3 0.948 108.3 47.8 -62.9 -49.3 13.7 22.3 18.8 70 6 C E H X S+ 0 0 45 -4,-2.4 4,-2.4 1,-0.2 -1,-0.2 0.925 113.3 49.9 -57.2 -40.9 12.9 22.5 22.5 71 7 C D H X S+ 0 0 109 -4,-1.9 4,-2.1 1,-0.2 -2,-0.2 0.922 112.0 46.5 -64.5 -45.2 13.5 26.3 22.4 72 8 C K H X S+ 0 0 92 -4,-2.6 4,-2.4 2,-0.2 -1,-0.2 0.840 112.0 51.1 -68.3 -39.6 11.2 26.8 19.4 73 9 C V H X S+ 0 0 0 -4,-2.9 4,-2.4 2,-0.2 -2,-0.2 0.915 110.5 48.1 -63.2 -44.2 8.5 24.7 20.9 74 10 C E H X S+ 0 0 98 -4,-2.4 4,-2.1 -5,-0.3 -2,-0.2 0.930 112.9 49.1 -62.9 -37.8 8.5 26.6 24.2 75 11 C E H X S+ 0 0 78 -4,-2.1 4,-2.6 2,-0.2 -1,-0.2 0.905 109.3 52.6 -65.0 -42.6 8.4 29.9 22.2 76 12 C L H X S+ 0 0 5 -4,-2.4 4,-2.4 1,-0.2 -1,-0.2 0.928 109.1 49.3 -60.8 -43.6 5.5 28.6 20.1 77 13 C L H X S+ 0 0 6 -4,-2.4 4,-2.5 2,-0.2 -1,-0.2 0.916 110.9 49.1 -61.0 -47.6 3.5 27.7 23.3 78 14 C S H X S+ 0 0 77 -4,-2.1 4,-2.2 2,-0.2 -2,-0.2 0.944 112.6 48.6 -62.9 -35.8 4.2 31.2 24.9 79 15 C K H X S+ 0 0 68 -4,-2.6 4,-2.7 1,-0.2 -2,-0.2 0.864 109.7 52.1 -69.7 -35.3 3.0 32.9 21.6 80 16 C A H X S+ 0 0 1 -4,-2.4 4,-2.6 2,-0.2 -1,-0.2 0.900 109.9 49.0 -65.6 -43.1 -0.1 30.7 21.5 81 17 C Y H X S+ 0 0 98 -4,-2.5 4,-1.9 2,-0.2 -2,-0.2 0.881 111.9 49.6 -65.5 -38.8 -0.9 31.7 25.1 82 18 C H H X S+ 0 0 118 -4,-2.2 4,-2.5 -5,-0.2 -2,-0.2 0.965 112.1 46.6 -62.5 -47.5 -0.4 35.3 24.2 83 19 C L H X S+ 0 0 2 -4,-2.7 4,-2.9 1,-0.2 5,-0.2 0.924 107.9 56.9 -61.4 -41.9 -2.6 35.1 21.1 84 20 C E H X S+ 0 0 70 -4,-2.6 4,-1.9 1,-0.2 -1,-0.2 0.884 111.1 43.2 -55.2 -46.6 -5.4 33.2 23.1 85 21 C N H X S+ 0 0 102 -4,-1.9 4,-2.6 2,-0.2 -1,-0.2 0.885 111.9 53.5 -71.2 -33.2 -5.6 36.1 25.6 86 22 C E H X S+ 0 0 34 -4,-2.5 4,-2.4 1,-0.2 -2,-0.2 0.906 109.8 49.1 -61.5 -40.7 -5.5 38.7 22.8 87 23 C V H X S+ 0 0 7 -4,-2.9 4,-2.5 2,-0.2 -1,-0.2 0.912 110.0 50.5 -64.8 -41.3 -8.4 36.9 21.2 88 24 C A H X S+ 0 0 50 -4,-1.9 4,-1.4 -5,-0.2 -2,-0.2 0.922 110.1 50.1 -62.4 -40.1 -10.3 36.9 24.5 89 25 C R H X S+ 0 0 145 -4,-2.6 4,-1.4 2,-0.2 3,-0.3 0.902 110.9 49.6 -65.8 -38.4 -9.7 40.6 24.9 90 26 C L H < S+ 0 0 26 -4,-2.4 -2,-0.2 1,-0.2 -1,-0.2 0.915 105.3 56.9 -66.3 -37.6 -11.0 41.2 21.3 91 27 C K H < S+ 0 0 120 -4,-2.5 -1,-0.2 1,-0.3 -2,-0.2 0.868 102.6 57.0 -60.7 -34.6 -14.1 39.1 22.1 92 28 C K H < 0 0 184 -4,-1.4 -1,-0.3 -3,-0.3 -2,-0.2 0.886 360.0 360.0 -61.7 -44.6 -14.7 41.5 24.9 93 29 C L < 0 0 168 -4,-1.4 -3,-0.0 -3,-0.2 -4,-0.0 -0.448 360.0 360.0 -62.7 360.0 -14.7 44.4 22.4