==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=11-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 01-NOV-03 1RB5 . COMPND 2 MOLECULE: GENERAL CONTROL PROTEIN GCN4; . SOURCE 2 SYNTHETIC: YES; . AUTHOR J.HOLTON,T.ALBER . 95 3 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6342.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 85 89.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 81 85.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A R > 0 0 156 0, 0.0 4,-2.4 0, 0.0 5,-0.2 0.000 360.0 360.0 360.0 -80.7 69.8 26.9 22.0 2 2 A M H > + 0 0 16 1,-0.2 4,-2.9 2,-0.2 5,-0.2 0.937 360.0 43.0 -55.7 -53.7 70.4 28.2 18.4 3 3 A K H > S+ 0 0 127 1,-0.2 4,-2.4 2,-0.2 -1,-0.2 0.830 114.8 51.7 -60.4 -34.5 68.4 25.4 16.7 4 4 A Q H > S+ 0 0 50 2,-0.2 4,-1.9 -3,-0.2 -1,-0.2 0.843 109.7 48.7 -68.5 -42.9 65.6 25.7 19.3 5 5 A L H X S+ 0 0 3 -4,-2.4 4,-2.0 2,-0.2 -2,-0.2 0.950 112.4 49.4 -64.2 -47.4 65.4 29.4 18.8 6 6 A E H X S+ 0 0 55 -4,-2.9 4,-2.1 1,-0.2 -2,-0.2 0.915 110.0 50.5 -59.9 -41.6 65.2 28.9 15.1 7 7 A D H X S+ 0 0 77 -4,-2.4 4,-2.4 1,-0.2 -1,-0.2 0.889 110.3 49.7 -65.8 -36.1 62.5 26.2 15.4 8 8 A K H X S+ 0 0 70 -4,-1.9 4,-2.6 1,-0.2 -1,-0.2 0.816 107.9 53.6 -69.9 -35.5 60.4 28.6 17.7 9 9 A V H X S+ 0 0 5 -4,-2.0 4,-2.4 2,-0.2 -1,-0.2 0.915 110.4 47.3 -63.1 -41.8 60.8 31.4 15.1 10 10 A E H X S+ 0 0 105 -4,-2.1 4,-2.4 2,-0.2 -2,-0.2 0.921 111.2 50.6 -66.3 -42.0 59.4 29.0 12.4 11 11 A E H X S+ 0 0 90 -4,-2.4 4,-2.3 1,-0.2 -2,-0.2 0.942 112.4 48.6 -55.8 -48.4 56.6 27.9 14.7 12 12 A L H X S+ 0 0 0 -4,-2.6 4,-2.8 2,-0.2 -2,-0.2 0.890 110.0 50.5 -57.4 -48.8 55.8 31.7 15.3 13 13 A L H X S+ 0 0 36 -4,-2.4 4,-2.2 2,-0.2 -1,-0.2 0.904 111.0 47.5 -63.7 -41.5 55.9 32.6 11.5 14 14 A S H X S+ 0 0 63 -4,-2.4 4,-2.3 1,-0.2 -1,-0.2 0.910 112.8 50.5 -68.6 -39.8 53.5 29.8 10.6 15 15 A K H X S+ 0 0 62 -4,-2.3 4,-2.5 1,-0.2 -2,-0.2 0.860 111.5 47.9 -59.3 -47.5 51.2 30.9 13.4 16 16 A A H X S+ 0 0 0 -4,-2.8 4,-2.3 2,-0.2 -1,-0.2 0.882 110.7 50.7 -59.6 -42.3 51.3 34.5 12.3 17 17 A Y H X S+ 0 0 125 -4,-2.2 4,-2.2 2,-0.2 -2,-0.2 0.927 111.1 48.8 -63.7 -41.3 50.6 33.5 8.6 18 18 A H H X S+ 0 0 104 -4,-2.3 4,-2.6 1,-0.2 -2,-0.2 0.918 110.5 51.2 -65.9 -39.1 47.6 31.4 9.7 19 19 A L H X S+ 0 0 3 -4,-2.5 4,-2.7 1,-0.2 -1,-0.2 0.912 108.3 52.7 -59.8 -44.2 46.4 34.4 11.8 20 20 A E H X S+ 0 0 89 -4,-2.3 4,-1.9 2,-0.2 -2,-0.2 0.939 110.6 46.7 -58.0 -43.0 46.7 36.6 8.7 21 21 A N H X S+ 0 0 39 -4,-2.2 4,-2.1 1,-0.2 -2,-0.2 0.917 112.2 50.4 -67.8 -41.4 44.6 34.2 6.7 22 22 A E H X S+ 0 0 40 -4,-2.6 4,-2.9 1,-0.2 -2,-0.2 0.876 107.9 53.2 -64.0 -39.4 41.9 34.0 9.5 23 23 A V H X S+ 0 0 5 -4,-2.7 4,-2.6 1,-0.2 -1,-0.2 0.924 108.7 50.0 -60.8 -46.0 41.7 37.8 9.8 24 24 A A H X S+ 0 0 59 -4,-1.9 4,-1.6 -5,-0.2 -2,-0.2 0.914 112.1 47.0 -59.5 -46.4 41.1 38.0 6.0 25 25 A R H >X S+ 0 0 126 -4,-2.1 4,-2.4 2,-0.2 3,-0.5 0.974 112.0 50.4 -58.5 -52.7 38.3 35.4 6.1 26 26 A L H 3X S+ 0 0 2 -4,-2.9 4,-2.6 1,-0.3 -2,-0.2 0.893 105.3 55.7 -54.0 -45.3 36.7 37.1 9.2 27 27 A K H 3X>S+ 0 0 91 -4,-2.6 4,-1.7 1,-0.2 5,-0.6 0.903 110.3 47.3 -53.9 -41.9 36.7 40.5 7.5 28 28 A K H <<5S+ 0 0 103 -4,-1.6 -2,-0.2 -3,-0.5 -1,-0.2 0.874 110.1 51.9 -66.7 -42.0 34.8 38.8 4.6 29 29 A L H <5S+ 0 0 99 -4,-2.4 -2,-0.2 1,-0.2 -1,-0.2 0.858 107.2 54.0 -63.5 -32.9 32.4 37.1 7.1 30 30 A V H <5S- 0 0 61 -4,-2.6 -2,-0.2 -5,-0.2 -1,-0.2 0.915 91.0-155.3 -70.5 -44.0 31.7 40.5 8.8 31 31 A G T <5 0 0 60 -4,-1.7 -3,-0.1 -5,-0.2 -4,-0.1 0.850 360.0 360.0 73.0 36.5 30.7 42.2 5.5 32 32 A E < 0 0 208 -5,-0.6 -1,-0.1 0, 0.0 -2,-0.0 -0.377 360.0 360.0 -73.6 360.0 31.5 45.8 6.4 33 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 34 1 B R > 0 0 137 0, 0.0 4,-2.2 0, 0.0 5,-0.2 0.000 360.0 360.0 360.0 -39.9 71.9 38.8 22.5 35 2 B M H > + 0 0 23 1,-0.2 4,-2.0 2,-0.2 5,-0.1 0.899 360.0 41.2 -61.4 -41.8 70.8 35.1 22.6 36 3 B K H > S+ 0 0 109 2,-0.2 4,-2.6 1,-0.2 5,-0.3 0.872 109.4 60.2 -79.3 -29.6 68.6 35.4 25.7 37 4 B Q H > S+ 0 0 117 1,-0.2 4,-1.8 2,-0.2 -2,-0.2 0.927 112.2 39.5 -58.5 -39.2 67.3 38.7 24.4 38 5 B L H X S+ 0 0 1 -4,-2.2 4,-2.3 2,-0.2 -2,-0.2 0.842 112.7 54.4 -83.6 -31.0 66.0 36.9 21.2 39 6 B E H X S+ 0 0 29 -4,-2.0 4,-1.8 -5,-0.2 -1,-0.2 0.915 111.6 46.1 -62.6 -41.9 64.8 33.8 23.2 40 7 B D H X S+ 0 0 95 -4,-2.6 4,-2.3 1,-0.2 -2,-0.2 0.908 111.4 53.3 -67.0 -41.9 62.8 36.0 25.4 41 8 B K H X S+ 0 0 71 -4,-1.8 4,-2.1 -5,-0.3 -2,-0.2 0.878 107.1 49.6 -62.6 -41.5 61.4 37.9 22.3 42 9 B V H X S+ 0 0 0 -4,-2.3 4,-2.3 2,-0.2 -1,-0.2 0.857 111.5 49.5 -69.5 -36.5 60.3 34.7 20.6 43 10 B E H X S+ 0 0 84 -4,-1.8 4,-2.0 2,-0.2 -2,-0.2 0.917 110.4 51.0 -64.5 -40.7 58.4 33.6 23.8 44 11 B E H X S+ 0 0 77 -4,-2.3 4,-1.8 1,-0.2 -2,-0.2 0.914 113.2 45.1 -60.9 -43.4 56.8 37.0 24.1 45 12 B L H X S+ 0 0 0 -4,-2.1 4,-2.4 1,-0.2 -1,-0.2 0.875 110.3 52.9 -71.9 -38.7 55.6 36.8 20.4 46 13 B L H X S+ 0 0 21 -4,-2.3 4,-2.0 2,-0.2 -1,-0.2 0.858 108.7 51.5 -62.3 -34.6 54.4 33.3 20.7 47 14 B S H X S+ 0 0 61 -4,-2.0 4,-2.3 2,-0.2 5,-0.2 0.919 109.6 49.8 -68.1 -40.5 52.3 34.3 23.8 48 15 B K H X S+ 0 0 70 -4,-1.8 4,-2.2 1,-0.2 -2,-0.2 0.926 109.2 51.8 -60.2 -45.4 50.8 37.2 21.7 49 16 B A H X S+ 0 0 0 -4,-2.4 4,-2.1 1,-0.2 -1,-0.2 0.871 107.5 52.9 -62.1 -43.4 50.0 34.7 18.9 50 17 B Y H X S+ 0 0 121 -4,-2.0 4,-1.9 2,-0.2 -2,-0.2 0.933 110.0 46.9 -55.8 -48.3 48.2 32.4 21.4 51 18 B H H X S+ 0 0 107 -4,-2.3 4,-2.0 1,-0.2 -2,-0.2 0.870 111.2 52.7 -66.0 -31.2 46.0 35.3 22.7 52 19 B L H X S+ 0 0 23 -4,-2.2 4,-2.4 2,-0.2 -1,-0.2 0.867 105.6 53.4 -69.4 -38.1 45.2 36.3 19.1 53 20 B E H X S+ 0 0 64 -4,-2.1 4,-2.2 2,-0.2 -1,-0.2 0.876 107.3 52.5 -60.0 -42.8 44.1 32.8 18.2 54 21 B N H X S+ 0 0 76 -4,-1.9 4,-2.3 2,-0.2 -2,-0.2 0.903 109.8 48.7 -56.5 -47.1 41.8 33.0 21.2 55 22 B E H X S+ 0 0 42 -4,-2.0 4,-2.8 1,-0.2 -2,-0.2 0.897 107.8 53.7 -61.9 -43.4 40.4 36.3 19.8 56 23 B V H X S+ 0 0 5 -4,-2.4 4,-2.2 2,-0.2 -1,-0.2 0.922 109.3 49.4 -56.3 -46.2 39.9 34.7 16.3 57 24 B A H X S+ 0 0 51 -4,-2.2 4,-1.9 1,-0.2 -2,-0.2 0.930 112.4 48.1 -61.7 -41.5 37.9 31.9 17.9 58 25 B R H X S+ 0 0 115 -4,-2.3 4,-2.8 1,-0.2 -2,-0.2 0.922 110.5 50.8 -62.3 -42.0 35.7 34.5 19.8 59 26 B L H X S+ 0 0 12 -4,-2.8 4,-2.1 1,-0.2 -1,-0.2 0.901 106.9 54.0 -68.8 -32.9 35.2 36.6 16.7 60 27 B K H X>S+ 0 0 70 -4,-2.2 5,-2.3 2,-0.2 4,-0.8 0.922 110.7 46.4 -64.9 -40.8 34.0 33.5 14.7 61 28 B K H ><5S+ 0 0 156 -4,-1.9 3,-1.1 1,-0.2 -2,-0.2 0.953 113.2 50.9 -62.5 -46.2 31.4 32.7 17.4 62 29 B L H 3<5S+ 0 0 99 -4,-2.8 -2,-0.2 1,-0.2 -1,-0.2 0.860 107.3 51.8 -59.2 -37.3 30.4 36.4 17.4 63 30 B V H 3<5S- 0 0 51 -4,-2.1 -1,-0.2 -5,-0.2 -2,-0.2 0.544 126.6 -92.2 -81.7 -9.4 29.9 36.7 13.6 64 31 B G T <<5 0 0 68 -3,-1.1 -3,-0.2 -4,-0.8 -2,-0.1 0.432 360.0 360.0 117.9 1.4 27.7 33.6 13.4 65 32 B E < 0 0 94 -5,-2.3 -1,-0.3 -6,-0.2 -2,-0.0 -0.517 360.0 360.0 -77.8 360.0 30.0 30.7 12.7 66 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 67 1 C R > 0 0 129 0, 0.0 4,-2.4 0, 0.0 5,-0.2 0.000 360.0 360.0 360.0 -37.1 37.1 44.0 17.7 68 2 C M H > + 0 0 21 2,-0.2 4,-2.5 1,-0.2 5,-0.1 0.972 360.0 40.0 -62.1 -50.5 37.6 43.2 14.0 69 3 C K H > S+ 0 0 126 2,-0.2 4,-2.4 1,-0.2 5,-0.2 0.903 114.3 53.7 -64.8 -42.0 39.8 46.2 13.3 70 4 C Q H > S+ 0 0 127 1,-0.2 4,-2.3 2,-0.2 -1,-0.2 0.940 111.0 47.4 -58.0 -42.4 41.7 45.8 16.7 71 5 C L H X S+ 0 0 3 -4,-2.4 4,-2.1 2,-0.2 5,-0.2 0.934 109.7 52.2 -65.3 -47.6 42.4 42.2 15.7 72 6 C E H X S+ 0 0 73 -4,-2.5 4,-2.3 1,-0.2 -1,-0.2 0.931 111.2 47.4 -56.0 -46.6 43.6 43.1 12.2 73 7 C D H X S+ 0 0 67 -4,-2.4 4,-2.2 1,-0.2 -1,-0.2 0.889 111.6 49.4 -62.7 -42.2 46.0 45.7 13.7 74 8 C K H X S+ 0 0 101 -4,-2.3 4,-2.3 2,-0.2 -1,-0.2 0.849 110.5 51.2 -66.5 -34.3 47.4 43.4 16.3 75 9 C V H X S+ 0 0 4 -4,-2.1 4,-2.5 2,-0.2 5,-0.2 0.926 109.6 50.2 -71.3 -38.7 48.0 40.6 13.6 76 10 C E H X S+ 0 0 75 -4,-2.3 4,-2.3 -5,-0.2 -2,-0.2 0.918 111.6 48.4 -63.9 -40.6 49.8 43.2 11.4 77 11 C E H X S+ 0 0 60 -4,-2.2 4,-2.7 1,-0.2 5,-0.3 0.916 110.3 52.1 -65.3 -41.2 52.0 44.1 14.4 78 12 C L H X S+ 0 0 1 -4,-2.3 4,-2.4 1,-0.2 -2,-0.2 0.914 110.6 47.3 -59.7 -47.0 52.7 40.4 15.1 79 13 C L H X S+ 0 0 45 -4,-2.5 4,-2.7 2,-0.2 5,-0.2 0.949 113.0 48.4 -60.9 -46.7 53.8 39.8 11.5 80 14 C S H X S+ 0 0 60 -4,-2.3 4,-2.4 1,-0.2 5,-0.2 0.949 114.2 46.0 -59.2 -49.2 56.1 42.8 11.4 81 15 C K H X S+ 0 0 68 -4,-2.7 4,-2.6 1,-0.2 -1,-0.2 0.898 112.7 50.3 -61.0 -42.5 57.7 41.9 14.8 82 16 C A H X S+ 0 0 0 -4,-2.4 4,-2.2 -5,-0.3 -1,-0.2 0.901 109.9 49.3 -67.6 -39.4 58.1 38.3 13.8 83 17 C Y H X S+ 0 0 126 -4,-2.7 4,-1.9 2,-0.2 -2,-0.2 0.890 112.6 48.6 -67.9 -42.5 59.8 39.1 10.4 84 18 C H H X S+ 0 0 103 -4,-2.4 4,-2.1 -5,-0.2 -2,-0.2 0.934 111.7 49.9 -59.0 -44.4 62.2 41.6 12.3 85 19 C L H X S+ 0 0 1 -4,-2.6 4,-2.7 1,-0.2 -2,-0.2 0.910 106.5 55.2 -58.4 -45.5 62.9 38.8 14.8 86 20 C E H X S+ 0 0 73 -4,-2.2 4,-2.2 1,-0.2 -1,-0.2 0.926 108.4 48.6 -55.5 -45.7 63.6 36.3 12.0 87 21 C N H X S+ 0 0 52 -4,-1.9 4,-2.0 2,-0.2 -1,-0.2 0.901 111.9 49.5 -61.2 -41.7 66.2 38.7 10.6 88 22 C E H X S+ 0 0 65 -4,-2.1 4,-2.6 2,-0.2 -2,-0.2 0.891 109.8 50.6 -62.9 -41.0 67.8 39.1 14.0 89 23 C V H X S+ 0 0 5 -4,-2.7 4,-2.4 1,-0.2 -1,-0.2 0.884 109.3 50.7 -66.9 -40.4 67.9 35.4 14.6 90 24 C A H X S+ 0 0 50 -4,-2.2 4,-1.2 2,-0.2 -1,-0.2 0.864 110.2 49.9 -65.7 -39.2 69.7 34.9 11.2 91 25 C R H X S+ 0 0 171 -4,-2.0 4,-1.3 2,-0.2 3,-0.5 0.917 111.7 49.4 -63.8 -43.3 72.3 37.6 12.1 92 26 C L H X S+ 0 0 9 -4,-2.6 4,-2.5 1,-0.2 5,-0.4 0.916 104.6 58.1 -60.1 -40.1 72.8 35.8 15.5 93 27 C K H X S+ 0 0 73 -4,-2.4 4,-2.7 1,-0.2 -1,-0.2 0.874 100.4 57.8 -60.6 -33.8 73.2 32.4 13.7 94 28 C K H < S+ 0 0 177 -4,-1.2 -1,-0.2 -3,-0.5 -2,-0.2 0.903 110.7 44.1 -62.2 -40.7 76.2 33.9 11.7 95 29 C L H < S+ 0 0 143 -4,-1.3 -2,-0.2 -3,-0.3 -1,-0.2 0.897 125.4 29.4 -68.5 -42.9 77.9 34.7 15.0 96 30 C V H < 0 0 87 -4,-2.5 -3,-0.2 1,-0.1 -2,-0.2 0.793 360.0 360.0 -97.5 -22.0 77.2 31.4 16.8 97 31 C G < 0 0 69 -4,-2.7 -1,-0.1 -5,-0.4 -2,-0.1 -0.294 360.0 360.0 67.1 360.0 77.1 29.0 13.9