==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=11-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 01-NOV-03 1RB6 . COMPND 2 MOLECULE: GENERAL CONTROL PROTEIN GCN4; . SOURCE 2 SYNTHETIC: YES; . AUTHOR J.HOLTON,T.ALBER . 94 3 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6502.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 85 90.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 3.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 81 86.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A R > 0 0 151 0, 0.0 4,-2.4 0, 0.0 5,-0.2 0.000 360.0 360.0 360.0 -60.4 -15.1 35.4 11.6 2 2 A M H > + 0 0 31 2,-0.2 4,-2.6 1,-0.2 5,-0.2 0.914 360.0 48.0 -63.9 -44.0 -14.6 35.5 15.4 3 3 A K H > S+ 0 0 127 2,-0.2 4,-2.6 1,-0.2 -1,-0.2 0.920 111.6 50.0 -67.2 -37.5 -15.7 31.9 15.8 4 4 A Q H > S+ 0 0 121 2,-0.2 4,-2.0 1,-0.2 -2,-0.2 0.906 110.9 50.7 -68.0 -35.0 -13.3 30.8 13.0 5 5 A L H X S+ 0 0 3 -4,-2.4 4,-2.2 1,-0.2 -2,-0.2 0.938 111.2 47.6 -63.9 -48.7 -10.5 32.7 14.7 6 6 A E H X S+ 0 0 51 -4,-2.6 4,-2.4 1,-0.2 5,-0.2 0.922 108.9 54.2 -57.3 -45.5 -11.2 31.0 18.0 7 7 A D H X S+ 0 0 79 -4,-2.6 4,-1.9 1,-0.2 -1,-0.2 0.893 109.6 47.9 -57.1 -45.6 -11.3 27.6 16.4 8 8 A K H X S+ 0 0 72 -4,-2.0 4,-2.2 2,-0.2 -1,-0.2 0.824 109.7 52.5 -63.5 -39.2 -7.9 28.2 14.9 9 9 A V H X S+ 0 0 2 -4,-2.2 4,-2.5 2,-0.2 -2,-0.2 0.906 110.6 47.0 -63.9 -40.6 -6.5 29.4 18.2 10 10 A E H X S+ 0 0 91 -4,-2.4 4,-2.1 2,-0.2 -2,-0.2 0.865 111.3 51.9 -69.3 -32.6 -7.7 26.3 20.0 11 11 A E H X S+ 0 0 84 -4,-1.9 4,-2.5 -5,-0.2 -2,-0.2 0.943 111.2 48.8 -61.3 -48.4 -6.3 24.1 17.1 12 12 A L H X S+ 0 0 0 -4,-2.2 4,-2.7 2,-0.2 -2,-0.2 0.942 110.1 49.5 -58.2 -50.4 -2.9 25.9 17.6 13 13 A L H X S+ 0 0 17 -4,-2.5 4,-2.3 1,-0.2 -1,-0.2 0.934 109.9 50.8 -62.9 -38.8 -2.9 25.4 21.4 14 14 A S H X S+ 0 0 82 -4,-2.1 4,-2.2 1,-0.2 -1,-0.2 0.902 112.4 47.9 -64.8 -42.4 -3.6 21.7 21.1 15 15 A K H X S+ 0 0 66 -4,-2.5 4,-2.7 1,-0.2 -1,-0.2 0.872 109.9 51.3 -64.8 -41.0 -0.8 21.4 18.6 16 16 A A H X S+ 0 0 0 -4,-2.7 4,-2.4 2,-0.2 -2,-0.2 0.902 111.5 47.6 -64.4 -38.3 1.6 23.3 20.7 17 17 A Y H X S+ 0 0 94 -4,-2.3 4,-2.3 2,-0.2 -2,-0.2 0.917 111.7 49.9 -69.7 -38.3 0.8 21.1 23.7 18 18 A H H X S+ 0 0 81 -4,-2.2 4,-2.4 2,-0.2 -2,-0.2 0.898 111.5 49.8 -64.7 -42.3 1.2 17.9 21.6 19 19 A L H X S+ 0 0 2 -4,-2.7 4,-2.8 2,-0.2 5,-0.2 0.913 108.6 52.1 -59.3 -45.3 4.6 19.3 20.4 20 20 A E H X S+ 0 0 53 -4,-2.4 4,-2.0 1,-0.2 -2,-0.2 0.945 112.3 45.9 -59.9 -43.9 5.7 20.0 24.0 21 21 A N H X S+ 0 0 84 -4,-2.3 4,-1.9 2,-0.2 -1,-0.2 0.862 112.7 50.0 -64.4 -43.7 4.8 16.4 24.9 22 22 A E H X S+ 0 0 11 -4,-2.4 4,-2.3 2,-0.2 -2,-0.2 0.928 109.7 50.6 -63.2 -41.9 6.5 14.9 21.9 23 23 A V H X S+ 0 0 12 -4,-2.8 4,-2.5 2,-0.2 -2,-0.2 0.903 108.5 52.7 -64.1 -39.5 9.7 17.0 22.6 24 24 A A H X S+ 0 0 50 -4,-2.0 4,-1.6 -5,-0.2 -1,-0.2 0.915 110.4 47.6 -65.5 -41.0 9.8 15.7 26.2 25 25 A R H X S+ 0 0 130 -4,-1.9 4,-1.5 1,-0.2 -2,-0.2 0.912 113.6 47.3 -60.7 -46.0 9.5 12.1 25.0 26 26 A L H X S+ 0 0 4 -4,-2.3 4,-2.6 2,-0.2 5,-0.2 0.842 106.9 56.9 -67.7 -37.2 12.3 12.6 22.4 27 27 A K H X>S+ 0 0 93 -4,-2.5 4,-2.4 1,-0.2 5,-0.6 0.912 108.6 47.3 -62.3 -38.4 14.5 14.4 25.0 28 28 A K H <5S+ 0 0 183 -4,-1.6 -1,-0.2 2,-0.2 -2,-0.2 0.842 111.3 50.8 -68.2 -40.5 14.3 11.3 27.2 29 29 A L H <5S+ 0 0 123 -4,-1.5 -2,-0.2 1,-0.2 -1,-0.2 0.909 114.5 43.5 -64.3 -42.3 15.1 9.0 24.2 30 30 A V H <5S- 0 0 67 -4,-2.6 -2,-0.2 -5,-0.1 -1,-0.2 0.898 97.2-148.6 -70.4 -43.8 18.1 11.0 23.3 31 31 A G T <5 0 0 61 -4,-2.4 -3,-0.2 1,-0.3 -4,-0.1 0.551 360.0 360.0 85.1 15.6 19.2 11.3 26.9 32 32 A E < 0 0 198 -5,-0.6 -1,-0.3 0, 0.0 -2,-0.1 -0.451 360.0 360.0 -89.5 360.0 20.9 14.7 26.8 33 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 34 1 B R > 0 0 115 0, 0.0 4,-2.1 0, 0.0 5,-0.2 0.000 360.0 360.0 360.0 -43.7 -7.1 44.2 15.2 35 2 B M H > + 0 0 33 1,-0.2 4,-1.6 2,-0.2 5,-0.1 0.835 360.0 45.5 -65.7 -33.9 -9.1 41.2 13.8 36 3 B K H > S+ 0 0 120 2,-0.2 4,-2.4 1,-0.2 5,-0.2 0.857 108.5 57.4 -79.7 -33.8 -6.9 40.8 10.7 37 4 B Q H > S+ 0 0 117 1,-0.2 4,-2.1 2,-0.2 -2,-0.2 0.923 111.2 43.6 -58.4 -42.0 -3.7 41.2 12.9 38 5 B L H X S+ 0 0 2 -4,-2.1 4,-2.3 2,-0.2 -2,-0.2 0.879 111.7 52.1 -76.4 -32.7 -4.9 38.2 15.0 39 6 B E H X S+ 0 0 38 -4,-1.6 4,-2.0 -5,-0.2 -2,-0.2 0.929 111.5 47.7 -67.2 -44.7 -6.0 36.1 11.9 40 7 B D H X S+ 0 0 70 -4,-2.4 4,-2.5 1,-0.2 -2,-0.2 0.927 111.6 51.4 -59.8 -45.6 -2.5 36.7 10.4 41 8 B K H X S+ 0 0 72 -4,-2.1 4,-2.5 -5,-0.2 5,-0.2 0.921 107.7 50.9 -61.2 -41.5 -0.9 35.7 13.7 42 9 B V H X S+ 0 0 1 -4,-2.3 4,-2.5 1,-0.2 -1,-0.2 0.911 111.7 48.0 -65.0 -40.6 -2.8 32.5 14.0 43 10 B E H X S+ 0 0 106 -4,-2.0 4,-2.1 2,-0.2 -1,-0.2 0.895 110.8 51.4 -67.4 -37.6 -1.9 31.4 10.5 44 11 B E H X S+ 0 0 65 -4,-2.5 4,-2.1 1,-0.2 -2,-0.2 0.934 114.1 43.4 -60.9 -51.4 1.8 32.3 11.1 45 12 B L H X S+ 0 0 0 -4,-2.5 4,-2.7 2,-0.2 -2,-0.2 0.873 111.0 54.3 -67.5 -31.5 1.8 30.2 14.3 46 13 B L H X S+ 0 0 25 -4,-2.5 4,-2.5 2,-0.2 -1,-0.2 0.905 108.6 50.2 -66.7 -39.6 -0.1 27.3 12.7 47 14 B S H X S+ 0 0 60 -4,-2.1 4,-2.3 2,-0.2 5,-0.2 0.939 111.5 47.1 -61.4 -45.0 2.5 27.2 9.9 48 15 B K H X S+ 0 0 95 -4,-2.1 4,-2.6 1,-0.2 -2,-0.2 0.917 110.8 53.1 -61.1 -44.0 5.3 27.1 12.5 49 16 B A H X S+ 0 0 2 -4,-2.7 4,-2.2 2,-0.2 -2,-0.2 0.932 108.4 49.5 -57.4 -48.5 3.5 24.4 14.4 50 17 B Y H X S+ 0 0 119 -4,-2.5 4,-1.8 1,-0.2 -2,-0.2 0.912 112.7 46.6 -57.9 -47.2 3.2 22.2 11.2 51 18 B H H X S+ 0 0 109 -4,-2.3 4,-1.8 1,-0.2 -1,-0.2 0.852 110.9 52.0 -67.6 -33.3 6.9 22.6 10.4 52 19 B L H X S+ 0 0 18 -4,-2.6 4,-2.2 -5,-0.2 -1,-0.2 0.883 107.1 53.9 -66.8 -39.7 7.9 21.8 14.0 53 20 B E H X S+ 0 0 74 -4,-2.2 4,-2.4 2,-0.2 -2,-0.2 0.933 107.4 51.0 -56.9 -42.4 5.7 18.7 13.8 54 21 B N H X S+ 0 0 51 -4,-1.8 4,-1.7 1,-0.2 -2,-0.2 0.881 110.1 49.5 -64.6 -36.7 7.7 17.7 10.6 55 22 B E H X S+ 0 0 34 -4,-1.8 4,-2.3 2,-0.2 -1,-0.2 0.836 109.5 51.7 -71.6 -36.6 11.0 18.2 12.5 56 23 B V H X S+ 0 0 0 -4,-2.2 4,-2.8 2,-0.2 -2,-0.2 0.919 109.2 49.4 -61.4 -50.1 9.8 16.1 15.4 57 24 B A H X S+ 0 0 50 -4,-2.4 4,-1.8 2,-0.2 -2,-0.2 0.869 110.9 50.7 -61.0 -35.2 8.8 13.2 13.1 58 25 B R H X S+ 0 0 128 -4,-1.7 4,-2.1 2,-0.2 -2,-0.2 0.958 112.8 45.7 -65.2 -50.8 12.3 13.4 11.4 59 26 B L H X S+ 0 0 15 -4,-2.3 4,-2.5 1,-0.2 5,-0.3 0.893 109.5 54.5 -63.6 -36.3 14.1 13.3 14.7 60 27 B K H X S+ 0 0 91 -4,-2.8 4,-1.3 1,-0.2 -1,-0.2 0.901 109.3 47.9 -64.5 -43.8 11.9 10.4 16.1 61 28 B K H X S+ 0 0 173 -4,-1.8 4,-0.9 -5,-0.2 -1,-0.2 0.896 112.5 50.6 -64.2 -41.8 12.7 8.3 13.0 62 29 B L H >< S+ 0 0 108 -4,-2.1 3,-0.6 1,-0.2 -2,-0.2 0.908 112.4 43.0 -61.6 -44.7 16.5 9.1 13.4 63 30 B V H 3< S+ 0 0 57 -4,-2.5 -1,-0.2 1,-0.2 -2,-0.2 0.769 108.0 63.7 -76.3 -20.1 16.7 8.2 17.1 64 31 B G H 3< 0 0 65 -4,-1.3 -1,-0.2 -5,-0.3 -2,-0.2 0.735 360.0 360.0 -72.6 -31.7 14.6 5.1 16.4 65 32 B E << 0 0 124 -4,-0.9 -4,-0.0 -3,-0.6 -1,-0.0 -0.694 360.0 360.0 -70.2 360.0 17.2 3.6 14.1 66 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 67 1 C R > 0 0 142 0, 0.0 4,-2.4 0, 0.0 5,-0.2 0.000 360.0 360.0 360.0 -38.7 19.0 20.2 16.6 68 2 C M H > + 0 0 33 1,-0.2 4,-2.4 2,-0.2 5,-0.2 0.907 360.0 43.8 -63.2 -47.9 17.5 19.0 19.9 69 3 C K H > S+ 0 0 124 2,-0.2 4,-2.3 1,-0.2 -1,-0.2 0.925 113.9 49.9 -64.1 -46.6 18.0 22.2 21.9 70 4 C Q H > S+ 0 0 126 1,-0.2 4,-2.4 2,-0.2 -2,-0.2 0.922 111.3 51.6 -59.3 -38.2 16.9 24.5 19.1 71 5 C L H X S+ 0 0 5 -4,-2.4 4,-2.7 2,-0.2 5,-0.2 0.946 110.0 47.4 -62.1 -47.7 13.7 22.3 18.8 72 6 C E H X S+ 0 0 32 -4,-2.4 4,-2.1 1,-0.2 -1,-0.2 0.921 113.1 49.7 -59.8 -43.3 12.9 22.5 22.5 73 7 C D H X S+ 0 0 80 -4,-2.3 4,-1.9 -5,-0.2 -1,-0.2 0.932 110.8 47.7 -64.4 -45.7 13.4 26.3 22.4 74 8 C K H X S+ 0 0 111 -4,-2.4 4,-2.6 2,-0.2 -2,-0.2 0.865 110.8 52.7 -68.1 -35.5 11.2 26.8 19.4 75 9 C V H X S+ 0 0 1 -4,-2.7 4,-2.3 1,-0.2 -1,-0.2 0.907 109.8 47.7 -67.2 -36.3 8.4 24.6 20.9 76 10 C E H X S+ 0 0 96 -4,-2.1 4,-2.1 -5,-0.2 -1,-0.2 0.896 113.0 48.9 -71.3 -36.8 8.5 26.6 24.2 77 11 C E H X S+ 0 0 101 -4,-1.9 4,-2.6 2,-0.2 -1,-0.2 0.882 109.1 52.8 -65.7 -44.5 8.3 29.9 22.2 78 12 C L H X S+ 0 0 5 -4,-2.6 4,-2.5 1,-0.2 -2,-0.2 0.928 110.0 48.4 -56.2 -45.3 5.5 28.6 20.1 79 13 C L H X S+ 0 0 5 -4,-2.3 4,-2.5 2,-0.2 -1,-0.2 0.897 111.9 48.3 -62.7 -44.4 3.5 27.7 23.3 80 14 C S H X S+ 0 0 74 -4,-2.1 4,-2.1 2,-0.2 -1,-0.2 0.925 112.7 49.1 -68.8 -31.5 4.1 31.1 24.8 81 15 C K H X S+ 0 0 67 -4,-2.6 4,-2.8 2,-0.2 -2,-0.2 0.883 110.2 51.4 -66.5 -40.5 3.1 32.8 21.6 82 16 C A H X S+ 0 0 0 -4,-2.5 4,-2.7 2,-0.2 -2,-0.2 0.909 109.7 48.9 -64.8 -46.0 -0.1 30.7 21.4 83 17 C Y H X S+ 0 0 96 -4,-2.5 4,-1.8 2,-0.2 -2,-0.2 0.899 111.7 50.3 -61.3 -39.4 -1.0 31.6 25.0 84 18 C H H X S+ 0 0 113 -4,-2.1 4,-2.3 1,-0.2 3,-0.2 0.957 111.8 47.2 -61.7 -51.5 -0.4 35.3 24.2 85 19 C L H X S+ 0 0 0 -4,-2.8 4,-2.6 1,-0.2 5,-0.2 0.895 107.8 56.5 -55.3 -46.0 -2.6 35.0 21.1 86 20 C E H X S+ 0 0 66 -4,-2.7 4,-1.8 1,-0.2 -1,-0.2 0.896 110.4 44.2 -57.6 -41.6 -5.4 33.2 23.1 87 21 C N H X S+ 0 0 98 -4,-1.8 4,-2.4 -3,-0.2 -1,-0.2 0.871 111.5 53.1 -73.6 -33.0 -5.6 36.1 25.6 88 22 C E H X S+ 0 0 20 -4,-2.3 4,-2.5 2,-0.2 -2,-0.2 0.899 109.8 48.8 -64.4 -41.3 -5.5 38.7 22.8 89 23 C V H X S+ 0 0 7 -4,-2.6 4,-2.6 2,-0.2 -1,-0.2 0.909 110.3 51.8 -64.6 -37.9 -8.4 37.0 21.1 90 24 C A H X S+ 0 0 43 -4,-1.8 4,-0.9 -5,-0.2 -2,-0.2 0.917 110.2 48.0 -66.2 -43.3 -10.3 36.9 24.5 91 25 C R H >X S+ 0 0 115 -4,-2.4 3,-0.9 2,-0.2 4,-0.7 0.927 112.0 50.3 -60.7 -45.3 -9.7 40.7 24.9 92 26 C L H >X S+ 0 0 12 -4,-2.5 4,-1.8 1,-0.2 3,-1.3 0.913 103.4 59.0 -60.9 -40.4 -11.0 41.2 21.3 93 27 C K H 3< S+ 0 0 113 -4,-2.6 -1,-0.2 1,-0.3 -2,-0.2 0.796 98.5 60.8 -59.2 -24.6 -14.1 39.1 22.1 94 28 C K H << S+ 0 0 187 -4,-0.9 -1,-0.3 -3,-0.9 -2,-0.2 0.764 109.0 42.8 -73.2 -26.3 -14.8 41.6 24.8 95 29 C L H << 0 0 147 -3,-1.3 -2,-0.2 -4,-0.7 -1,-0.2 0.767 360.0 360.0 -89.6 -30.2 -15.1 44.3 22.1 96 30 C V < 0 0 123 -4,-1.8 -3,-0.2 -94,-0.0 -2,-0.1 0.811 360.0 360.0-115.0 360.0 -17.0 42.4 19.5