==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=22-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ANTIFREEZE 24-FEB-98 3RDN . COMPND 2 MOLECULE: ANTIFREEZE PROTEIN RD3 TYPE III; . SOURCE 2 ORGANISM_SCIENTIFIC: LYCODICHTHYS DEARBORNI; . AUTHOR K.MIURA,S.OHGIYA,T.HOSHINO,N.NEMOTO,K.HIKICHI,S.TSUDA . 73 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4892.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 37 50.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 14 19.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 11 15.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 2.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 4 5.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 3 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A N 0 0 169 0, 0.0 2,-0.1 0, 0.0 25,-0.1 0.000 360.0 360.0 360.0 -57.7 13.1 7.4 -9.0 2 2 A K - 0 0 159 1,-0.1 2,-0.4 23,-0.0 23,-0.0 -0.309 360.0 -81.6 -93.4-178.2 13.0 5.7 -5.6 3 3 A A - 0 0 30 23,-0.1 31,-0.9 21,-0.1 23,-0.3 -0.694 43.1-151.6 -87.8 134.9 11.5 2.2 -4.7 4 4 A S E -AB 25 33A 5 21,-2.2 21,-1.8 -2,-0.4 2,-0.5 -0.614 24.6 -99.6-101.1 163.8 7.7 2.0 -4.3 5 5 A V E +A 24 0A 2 27,-3.3 50,-2.6 19,-0.2 2,-0.4 -0.708 43.5 177.1 -85.6 123.5 5.8 -0.5 -2.0 6 6 A V E -AC 23 54A 11 17,-2.1 17,-2.0 -2,-0.5 48,-0.3 -0.987 34.9-112.9-128.9 131.6 4.3 -3.4 -4.0 7 7 A A E -AC 22 53A 12 46,-3.0 45,-1.9 -2,-0.4 46,-0.8 -0.418 22.6-161.0 -62.3 122.6 2.4 -6.4 -2.5 8 8 A N S S+ 0 0 77 13,-2.9 -1,-0.2 -2,-0.2 44,-0.2 0.925 74.5 34.5 -73.0 -43.4 4.6 -9.5 -2.9 9 9 A Q S S- 0 0 86 12,-0.2 2,-0.5 42,-0.2 44,-0.3 -0.413 96.9 -92.9-101.7-178.1 1.7 -12.0 -2.5 10 10 A L - 0 0 101 41,-0.1 41,-0.1 -2,-0.1 -2,-0.0 -0.846 42.7-177.7-100.0 125.2 -2.0 -11.8 -3.5 11 11 A I B -D 49 0B 3 38,-3.2 38,-2.2 -2,-0.5 3,-0.1 -0.951 19.4-130.4-124.3 144.0 -4.4 -10.4 -0.9 12 12 A P - 0 0 84 0, 0.0 3,-0.3 0, 0.0 37,-0.2 0.083 50.7 -59.7 -74.2-168.4 -8.2 -10.0 -1.0 13 13 A I S S+ 0 0 89 1,-0.2 33,-0.2 35,-0.1 35,-0.1 -0.446 119.2 19.4 -75.7 150.8 -10.1 -6.8 -0.1 14 14 A N S S+ 0 0 80 31,-1.2 2,-0.4 33,-0.4 -1,-0.2 0.982 85.7 153.9 54.9 63.5 -9.8 -5.4 3.4 15 15 A T - 0 0 27 -3,-0.3 30,-0.3 -4,-0.1 -1,-0.2 -0.979 46.6-116.5-125.8 129.9 -6.5 -7.3 4.3 16 16 A A - 0 0 41 -2,-0.4 2,-0.3 28,-0.2 28,-0.2 -0.317 31.7-131.8 -61.6 142.1 -4.0 -6.1 6.9 17 17 A L - 0 0 12 26,-1.3 25,-2.4 23,-0.4 2,-0.3 -0.717 22.9-169.4 -98.0 149.0 -0.6 -5.3 5.4 18 18 A T > - 0 0 54 -2,-0.3 4,-2.5 23,-0.2 3,-0.2 -0.843 35.8-108.5-130.5 168.7 2.8 -6.6 6.8 19 19 A L T 4 S+ 0 0 108 -2,-0.3 -1,-0.1 1,-0.2 18,-0.0 0.939 119.8 51.0 -64.1 -45.2 6.5 -5.9 6.2 20 20 A I T 4 S+ 0 0 152 1,-0.2 -1,-0.2 3,-0.1 -12,-0.1 0.773 113.2 48.5 -64.6 -22.6 7.1 -9.3 4.5 21 21 A M T 4 S+ 0 0 34 -3,-0.2 -13,-2.9 -13,-0.1 2,-0.4 0.924 100.5 67.1 -83.8 -47.7 4.1 -8.5 2.2 22 22 A M E < S-A 7 0A 14 -4,-2.5 2,-0.5 -15,-0.2 -15,-0.2 -0.606 70.8-163.9 -77.0 124.6 5.0 -4.9 1.2 23 23 A K E -A 6 0A 95 -17,-2.0 -17,-2.1 -2,-0.4 2,-1.8 -0.930 17.3-141.3-113.1 125.3 8.2 -4.9 -1.0 24 24 A A E +A 5 0A 62 -2,-0.5 2,-0.3 -19,-0.2 -19,-0.2 -0.541 46.1 150.8 -82.9 80.2 10.2 -1.7 -1.6 25 25 A E E -A 4 0A 95 -2,-1.8 -21,-2.2 -21,-1.8 2,-1.6 -0.867 53.2-120.5-113.3 147.3 11.0 -2.3 -5.3 26 26 A V + 0 0 96 -2,-0.3 2,-0.3 -23,-0.3 -23,-0.1 -0.600 65.5 126.3 -85.4 84.8 11.6 0.4 -8.0 27 27 A V - 0 0 55 -2,-1.6 -23,-0.1 2,-0.2 -2,-0.1 -0.940 51.5 -62.6-137.7 160.8 8.8 -0.7 -10.5 28 28 A T S S+ 0 0 127 -2,-0.3 2,-0.1 2,-0.1 26,-0.1 -0.705 101.6 41.8 -99.7 153.4 5.9 1.0 -12.3 29 29 A P S S- 0 0 79 0, 0.0 2,-1.1 0, 0.0 -2,-0.2 0.576 84.0-132.7 -76.9 164.2 3.5 2.3 -11.7 30 30 A M + 0 0 130 -2,-0.1 -2,-0.1 1,-0.1 -4,-0.1 -0.661 38.9 164.0 -82.8 100.2 4.9 4.3 -8.7 31 31 A G - 0 0 25 -2,-1.1 25,-0.2 1,-0.3 -1,-0.1 0.573 55.4 -17.3 -85.2-121.4 2.3 3.8 -6.0 32 32 A I S S- 0 0 14 23,-0.9 -27,-3.3 -27,-0.4 23,-0.3 -0.732 70.6-127.5 -90.7 136.2 3.1 4.6 -2.3 33 33 A P B -B 4 0A 67 0, 0.0 3,-0.5 0, 0.0 -29,-0.2 -0.081 30.3 -98.8 -70.5 175.8 6.8 5.0 -1.4 34 34 A A S S+ 0 0 42 -31,-0.9 3,-0.4 1,-0.2 -30,-0.1 -0.007 93.5 106.3 -88.4 34.0 8.4 3.0 1.5 35 35 A E S S+ 0 0 148 1,-0.2 -1,-0.2 2,-0.1 4,-0.1 0.946 88.5 29.1 -77.2 -48.9 8.2 6.1 3.9 36 36 A E S > S+ 0 0 28 -3,-0.5 4,-3.8 1,-0.2 5,-0.5 -0.069 80.6 130.2-101.3 34.9 5.3 4.8 6.0 37 37 A I H > S+ 0 0 25 -3,-0.4 4,-1.4 1,-0.2 -1,-0.2 0.954 82.2 36.5 -52.1 -54.5 6.1 1.0 5.6 38 38 A P H 4 S+ 0 0 90 0, 0.0 -1,-0.2 0, 0.0 -2,-0.1 0.744 121.6 49.4 -71.5 -22.6 5.9 0.4 9.4 39 39 A N H 4 S+ 0 0 96 1,-0.1 4,-0.3 -4,-0.1 -2,-0.2 0.948 111.0 44.9 -81.8 -52.1 3.0 2.9 9.7 40 40 A L H >< S+ 0 0 5 -4,-3.8 3,-1.5 2,-0.1 -23,-0.4 0.819 91.9 105.4 -61.8 -27.8 0.8 1.6 6.9 41 41 A V T 3< S+ 0 0 45 -4,-1.4 -23,-0.2 -5,-0.5 3,-0.1 -0.252 80.5 26.1 -54.2 136.3 1.5 -2.0 8.1 42 42 A G T 3 S+ 0 0 47 -25,-2.4 -1,-0.2 1,-0.4 -2,-0.1 -0.189 96.9 105.3 102.1 -42.9 -1.6 -3.4 10.0 43 43 A M < - 0 0 20 -3,-1.5 -26,-1.3 -4,-0.3 -1,-0.4 -0.300 64.2-133.4 -69.2 156.7 -4.2 -1.2 8.1 44 44 A Q - 0 0 85 -28,-0.2 17,-0.7 -3,-0.1 18,-0.3 -0.654 11.4-126.8-108.0 167.3 -6.4 -2.9 5.5 45 45 A V B -E 60 0C 2 -30,-0.3 -31,-1.2 -2,-0.2 15,-0.2 -0.601 7.2-137.0-107.7 171.7 -7.3 -1.8 1.9 46 46 A N S S+ 0 0 71 13,-3.5 2,-0.2 -2,-0.2 14,-0.1 0.664 85.1 52.4-101.0 -21.0 -10.7 -1.3 0.2 47 47 A R S S- 0 0 140 12,-0.7 -33,-0.4 -35,-0.1 2,-0.3 -0.602 93.9 -92.1-109.4 174.0 -9.8 -2.9 -3.2 48 48 A A - 0 0 52 -2,-0.2 -35,-0.1 -35,-0.1 -2,-0.1 -0.633 32.0-158.4 -86.2 142.6 -8.3 -6.3 -4.1 49 49 A V B -D 11 0B 12 -38,-2.2 -38,-3.2 -2,-0.3 3,-0.1 -0.873 9.0-167.8-126.5 101.6 -4.4 -6.5 -4.5 50 50 A P > - 0 0 63 0, 0.0 3,-0.9 0, 0.0 -39,-0.2 0.146 46.8 -51.4 -70.3-168.5 -3.1 -9.4 -6.6 51 51 A L T 3 S+ 0 0 116 1,-0.2 -43,-0.2 -41,-0.1 -42,-0.2 -0.449 125.1 10.1 -71.0 140.6 0.6 -10.5 -6.7 52 52 A G T 3 S+ 0 0 54 -45,-1.9 2,-0.6 1,-0.2 -1,-0.2 0.870 87.8 156.5 62.0 36.6 3.2 -7.7 -7.5 53 53 A T E < -C 7 0A 23 -3,-0.9 -46,-3.0 -46,-0.8 -1,-0.2 -0.830 38.7-132.8 -98.1 120.5 0.5 -4.9 -7.1 54 54 A T E -C 6 0A 11 -2,-0.6 2,-0.5 -48,-0.3 -48,-0.3 -0.294 34.1 -93.9 -66.3 153.5 1.9 -1.5 -6.2 55 55 A L - 0 0 17 -50,-2.6 -23,-0.9 -23,-0.3 -50,-0.1 -0.556 47.4-160.6 -71.6 116.8 0.2 0.4 -3.3 56 56 A M > - 0 0 77 -2,-0.5 4,-0.9 -25,-0.2 -25,-0.1 -0.701 22.6-133.1 -99.8 153.9 -2.5 2.7 -4.9 57 57 A P T 4 S+ 0 0 66 0, 0.0 3,-0.3 0, 0.0 -1,-0.1 0.887 108.1 50.6 -70.8 -40.0 -4.1 5.7 -3.2 58 58 A D T 4 S+ 0 0 121 1,-0.2 -12,-0.1 -3,-0.0 -3,-0.0 0.807 105.3 58.8 -69.4 -26.3 -7.7 4.7 -4.2 59 59 A M T 4 S+ 0 0 25 -13,-0.1 -13,-3.5 -14,-0.1 -12,-0.7 0.824 92.5 79.5 -72.8 -29.4 -7.1 1.2 -2.8 60 60 A V B < -E 45 0C 11 -4,-0.9 3,-0.3 -3,-0.3 -15,-0.2 -0.622 62.8-164.2 -81.4 135.0 -6.3 2.6 0.7 61 61 A K S S+ 0 0 113 -17,-0.7 2,-0.9 -2,-0.3 -1,-0.2 0.969 81.1 24.1 -80.9 -68.6 -9.4 3.6 2.8 62 62 A N S S- 0 0 75 -18,-0.3 -1,-0.3 11,-0.1 10,-0.1 -0.789 84.1-145.4-101.6 96.8 -7.9 5.8 5.6 63 63 A Y - 0 0 53 -2,-0.9 10,-0.0 -3,-0.3 -23,-0.0 -0.327 1.5-150.5 -59.5 136.4 -4.6 7.3 4.3 64 64 A E S S+ 0 0 62 1,-0.1 2,-1.1 6,-0.0 -1,-0.1 0.805 79.6 81.1 -80.9 -27.9 -2.0 7.7 7.1 65 65 A D - 0 0 53 1,-0.1 2,-1.4 6,-0.0 3,-0.2 -0.649 62.4-171.1 -81.0 101.4 -0.3 10.7 5.5 66 66 A G + 0 0 59 -2,-1.1 5,-0.2 1,-0.1 -1,-0.1 -0.416 44.9 117.2 -90.3 62.4 -2.6 13.6 6.5 67 67 A T S S- 0 0 99 -2,-1.4 -1,-0.1 3,-0.2 4,-0.0 0.862 86.9 -39.6 -92.1 -84.6 -0.9 16.2 4.3 68 68 A T S S+ 0 0 125 -3,-0.2 -2,-0.0 3,-0.0 0, 0.0 0.722 129.5 5.9-111.1 -78.4 -3.2 17.6 1.6 69 69 A S S S+ 0 0 117 2,-0.1 3,-0.1 -3,-0.0 2,-0.1 0.967 121.6 62.2 -75.1 -53.4 -5.6 15.1 -0.1 70 70 A P S S+ 0 0 36 0, 0.0 2,-0.2 0, 0.0 -3,-0.2 -0.348 73.0 80.1 -71.7 153.7 -4.8 12.0 2.1 71 71 A G S S+ 0 0 15 -5,-0.2 2,-0.4 -2,-0.1 -5,-0.1 -0.736 84.9 21.8 153.8-100.3 -5.6 12.2 5.8 72 72 A L 0 0 176 -2,-0.2 -8,-0.0 -3,-0.1 -10,-0.0 -0.821 360.0 360.0-103.9 141.2 -9.1 11.6 7.2 73 73 A K 0 0 222 -2,-0.4 -11,-0.1 -10,-0.0 -12,-0.0 -0.340 360.0 360.0 -75.8 360.0 -11.9 9.8 5.3