==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=11-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER HYDROLASE(ENDORIBONUCLEASE) 19-FEB-92 1RGK . COMPND 2 MOLECULE: RIBONUCLEASE T1; . SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS ORYZAE; . AUTHOR J.GRANZIN,R.PURAS-LUTZKE,O.LANDT,H.-P.GRUNERT,U.HEINEMANN, . 104 1 2 2 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5346.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 58 55.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 28 26.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 4.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 8.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 14 13.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 1 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A A 0 0 148 0, 0.0 2,-0.4 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0 149.7 6.4 -4.9 15.2 2 2 A a - 0 0 47 1,-0.1 10,-0.2 10,-0.1 3,-0.2 -0.780 360.0-159.6 -96.9 135.6 7.7 -1.7 13.6 3 3 A D S S+ 0 0 89 8,-1.4 2,-0.4 -2,-0.4 9,-0.2 0.791 92.7 19.0 -76.8 -28.8 6.2 1.7 14.1 4 4 A Y E S-A 11 0A 60 7,-1.9 7,-2.5 -3,-0.1 2,-0.5 -0.996 70.0-162.6-142.0 134.0 7.9 2.7 10.9 5 5 A T E -A 10 0A 48 -2,-0.4 99,-2.7 5,-0.2 2,-0.6 -0.982 5.0-175.2-123.2 117.7 9.3 0.5 8.2 6 6 A b E > -A 9 0A 1 3,-2.4 3,-2.8 -2,-0.5 2,-0.5 -0.918 67.3 -58.8-113.1 97.9 11.8 2.0 5.7 7 7 A G T 3 S- 0 0 46 -2,-0.6 97,-0.1 1,-0.3 84,-0.0 -0.503 123.2 -19.7 64.5-115.1 12.5 -0.6 3.0 8 8 A S T 3 S+ 0 0 117 -2,-0.5 -1,-0.3 -3,-0.1 2,-0.3 0.506 116.1 107.2-101.3 -2.7 13.8 -3.4 5.2 9 9 A N E < -A 6 0A 50 -3,-2.8 -3,-2.4 1,-0.0 2,-0.5 -0.569 55.0-152.5 -82.1 137.4 14.7 -1.2 8.2 10 10 A a E -A 5 0A 68 -2,-0.3 2,-0.4 -5,-0.2 -5,-0.2 -0.919 14.6-179.3-111.6 126.7 12.5 -1.3 11.3 11 11 A Y E -A 4 0A 3 -7,-2.5 -7,-1.9 -2,-0.5 -8,-1.4 -0.981 14.8-150.4-128.9 140.4 12.2 1.6 13.7 12 12 A S >> - 0 0 37 -2,-0.4 4,-1.6 -9,-0.2 3,-0.5 -0.562 37.9-103.7 -97.0 166.4 10.3 2.0 16.9 13 13 A S H 3> S+ 0 0 59 1,-0.2 4,-2.7 2,-0.2 5,-0.2 0.876 122.7 58.8 -56.1 -38.0 8.9 5.4 18.1 14 14 A S H 3> S+ 0 0 74 1,-0.2 4,-2.2 2,-0.2 -1,-0.2 0.874 102.7 51.9 -59.4 -39.4 11.8 5.6 20.6 15 15 A D H <> S+ 0 0 52 -3,-0.5 4,-2.4 2,-0.2 -1,-0.2 0.902 111.5 47.6 -62.6 -43.0 14.4 5.4 17.7 16 16 A V H X S+ 0 0 3 -4,-1.6 4,-2.9 2,-0.2 5,-0.2 0.933 111.7 49.3 -64.0 -47.7 12.6 8.2 16.0 17 17 A S H X S+ 0 0 76 -4,-2.7 4,-2.1 1,-0.2 -2,-0.2 0.891 111.6 49.6 -58.8 -42.8 12.5 10.4 19.1 18 18 A T H X S+ 0 0 77 -4,-2.2 4,-1.7 -5,-0.2 -2,-0.2 0.954 112.9 45.4 -63.6 -50.9 16.1 9.8 19.8 19 19 A A H X S+ 0 0 8 -4,-2.4 4,-2.5 1,-0.2 5,-0.2 0.918 113.6 49.9 -59.5 -47.0 17.2 10.7 16.2 20 20 A Q H X S+ 0 0 23 -4,-2.9 4,-2.8 1,-0.2 5,-0.2 0.898 107.9 53.4 -60.5 -40.7 15.0 13.8 16.1 21 21 A A H X S+ 0 0 60 -4,-2.1 4,-1.8 -5,-0.2 -1,-0.2 0.912 111.6 45.9 -61.0 -42.4 16.3 15.1 19.5 22 22 A A H X S+ 0 0 26 -4,-1.7 4,-1.6 2,-0.2 -2,-0.2 0.930 114.8 45.3 -65.6 -48.8 19.8 14.8 18.2 23 23 A G H X S+ 0 0 0 -4,-2.5 4,-2.0 1,-0.2 -2,-0.2 0.886 112.1 52.7 -63.8 -41.1 19.2 16.5 14.9 24 24 A Y H X S+ 0 0 32 -4,-2.8 4,-2.4 -5,-0.2 -1,-0.2 0.901 105.8 53.3 -63.3 -40.9 17.1 19.3 16.5 25 25 A K H X S+ 0 0 66 -4,-1.8 4,-2.0 -5,-0.2 -1,-0.2 0.905 108.1 50.3 -60.2 -43.1 19.9 20.1 19.0 26 26 A L H <>S+ 0 0 31 -4,-1.6 5,-2.5 1,-0.2 4,-0.5 0.927 109.6 52.6 -60.5 -44.5 22.4 20.5 16.1 27 27 A H H ><5S+ 0 0 42 -4,-2.0 3,-1.1 1,-0.2 -2,-0.2 0.906 108.0 49.3 -58.1 -45.1 19.9 22.8 14.4 28 28 A E H 3<5S+ 0 0 126 -4,-2.4 -1,-0.2 1,-0.2 -2,-0.2 0.882 112.2 50.3 -61.7 -37.9 19.6 25.0 17.5 29 29 A D T 3<5S- 0 0 106 -4,-2.0 -1,-0.2 -5,-0.2 -2,-0.2 0.446 110.4-120.7 -80.3 -3.8 23.4 25.2 17.7 30 30 A G T < 5S+ 0 0 68 -3,-1.1 2,-0.3 -4,-0.5 -3,-0.2 0.887 71.2 131.3 62.8 39.8 23.9 26.1 14.1 31 31 A E < - 0 0 110 -5,-2.5 2,-0.3 -6,-0.1 -1,-0.2 -0.847 37.1-172.4-124.2 159.3 26.0 23.0 13.6 32 32 A T - 0 0 60 -2,-0.3 2,-0.3 -3,-0.1 5,-0.1 -0.952 7.9-152.1-144.7 161.5 26.1 20.1 11.2 33 33 A V B > +B 38 0B 40 5,-2.4 5,-2.5 -2,-0.3 37,-0.2 -0.965 52.0 31.3-136.3 152.5 28.0 16.8 10.8 34 34 A G T > 5S- 0 0 27 -2,-0.3 3,-1.7 35,-0.2 37,-0.1 0.086 92.0 -74.8 88.2 159.7 29.0 14.7 7.9 35 35 A S T 3 5S+ 0 0 112 35,-0.5 -1,-0.2 1,-0.3 36,-0.1 0.830 132.5 51.7 -60.4 -32.2 30.1 15.5 4.3 36 36 A N T 3 5S- 0 0 84 -3,-0.1 -1,-0.3 34,-0.1 -2,-0.1 0.272 111.8-121.3 -89.1 6.8 26.5 16.2 3.4 37 37 A S T < 5 - 0 0 56 -3,-1.7 -3,-0.2 1,-0.1 -2,-0.1 0.944 36.5-130.4 52.3 70.5 26.0 18.6 6.4 38 38 A Y B + 0 0 44 -2,-0.5 3,-1.7 1,-0.2 6,-0.1 -0.274 45.1 146.4 -81.4 55.1 8.7 18.8 0.1 45 45 A Y T 3 + 0 0 151 -2,-1.8 -1,-0.2 1,-0.3 0, 0.0 0.697 69.6 58.9 -65.0 -17.7 8.6 18.9 -3.7 46 46 A Q T 3 S- 0 0 76 -3,-0.3 -1,-0.3 55,-0.0 -2,-0.1 0.510 109.2-125.9 -88.4 -4.0 6.9 15.4 -3.7 47 47 A G < - 0 0 55 -3,-1.7 -2,-0.1 1,-0.1 -3,-0.1 0.872 34.5-172.3 64.0 45.0 4.1 16.8 -1.7 48 48 A F - 0 0 24 1,-0.1 2,-2.1 53,-0.0 -1,-0.1 -0.374 36.5-105.2 -65.7 147.6 4.1 14.3 1.2 49 49 A D + 0 0 139 2,-0.0 2,-0.4 -2,-0.0 -1,-0.1 -0.462 52.3 170.5 -76.5 73.9 1.2 14.7 3.5 50 50 A F - 0 0 21 -2,-2.1 38,-0.1 1,-0.1 37,-0.1 -0.722 25.4-156.9 -87.2 134.8 2.9 16.4 6.5 51 51 A S S S+ 0 0 112 -2,-0.4 2,-0.3 36,-0.4 -1,-0.1 0.398 72.3 68.3 -91.1 0.2 0.6 17.7 9.1 52 52 A V S S- 0 0 26 35,-0.1 2,-0.1 33,-0.1 -2,-0.1 -0.831 87.3-104.5-116.9 155.3 3.0 20.3 10.5 53 53 A S - 0 0 81 -2,-0.3 29,-0.2 1,-0.1 30,-0.2 -0.397 44.3 -86.5 -83.4 160.4 4.3 23.4 8.8 54 54 A S S S+ 0 0 75 27,-0.1 2,-0.2 -2,-0.1 -1,-0.1 -0.247 77.7 98.5 -81.9 175.0 7.6 24.1 7.2 55 55 A P - 0 0 61 0, 0.0 27,-1.2 0, 0.0 2,-0.3 0.486 66.3-165.1 -65.7 155.6 10.4 24.9 7.1 56 56 A Y E -CD 42 81C 25 -14,-0.7 -14,-2.6 25,-0.2 2,-0.3 -0.842 12.2-162.9-115.2 152.5 11.5 21.3 7.3 57 57 A Y E -CD 41 80C 35 23,-2.8 23,-2.3 -2,-0.3 2,-0.4 -0.968 10.0-142.5-133.1 145.2 14.9 19.8 8.1 58 58 A E E +CD 40 79C 12 -18,-2.6 -18,-1.5 -2,-0.3 21,-0.2 -0.902 17.8 176.9-112.9 140.6 16.2 16.2 7.4 59 59 A W E - D 0 78C 3 19,-2.0 19,-2.9 -2,-0.4 2,-0.1 -0.998 34.3-105.0-140.3 135.2 18.4 14.2 9.7 60 60 A P E - D 0 77C 1 0, 0.0 8,-0.5 0, 0.0 2,-0.5 -0.377 24.3-160.3 -68.4 140.5 19.7 10.7 9.2 61 61 A I B -G 67 0D 7 15,-1.6 15,-0.4 12,-0.2 2,-0.4 -0.977 17.6-141.4-116.4 127.1 18.2 7.8 11.2 62 62 A L > - 0 0 35 4,-0.6 3,-1.6 -2,-0.5 12,-0.1 -0.761 13.5-137.5 -98.2 138.6 20.4 4.7 11.4 63 63 A S T 3 S+ 0 0 84 -2,-0.4 -53,-0.1 1,-0.3 -1,-0.1 0.832 102.8 64.2 -56.7 -33.7 19.2 1.1 11.2 64 64 A S T 3 S- 0 0 76 1,-0.1 -1,-0.3 2,-0.1 3,-0.1 0.660 109.7-118.2 -65.1 -23.0 21.7 0.3 14.0 65 65 A G S < S+ 0 0 43 -3,-1.6 2,-0.2 1,-0.4 -2,-0.1 0.320 74.3 125.7 97.7 -7.9 20.0 2.5 16.6 66 66 A D - 0 0 109 1,-0.1 -4,-0.6 -5,-0.0 -1,-0.4 -0.518 68.3-106.1 -82.3 155.6 23.0 4.6 16.9 67 67 A V B -G 61 0D 62 -2,-0.2 -6,-0.1 1,-0.1 2,-0.1 -0.618 43.2 -99.3 -81.9 137.5 22.8 8.4 16.5 68 68 A Y + 0 0 8 -8,-0.5 -1,-0.1 -2,-0.3 -7,-0.0 -0.334 43.2 174.9 -58.6 128.5 24.3 9.7 13.3 69 69 A S - 0 0 106 3,-0.1 -35,-0.2 -2,-0.1 -1,-0.1 0.210 60.8 -70.6-125.3 18.3 27.8 11.0 13.8 70 70 A G S S+ 0 0 29 -37,-0.2 -35,-0.5 1,-0.1 -33,-0.1 0.427 98.4 96.3 114.4 -5.8 29.2 12.0 10.4 71 71 A G S S- 0 0 53 1,-0.3 -36,-0.2 -37,-0.1 -1,-0.1 0.280 91.1 -19.0 -91.7-139.7 29.9 8.7 8.5 72 72 A S - 0 0 103 1,-0.1 -1,-0.3 -38,-0.1 -3,-0.1 -0.542 57.8-157.0 -67.8 127.0 27.7 7.0 5.9 73 73 A P - 0 0 22 0, 0.0 3,-0.3 0, 0.0 -12,-0.2 0.542 22.1-149.4 -84.6 -6.6 24.1 8.4 6.5 74 74 A G - 0 0 45 1,-0.2 -12,-0.1 -14,-0.1 0, 0.0 -0.259 36.4 -70.4 68.9-162.2 22.3 5.4 4.9 75 75 A A S S+ 0 0 24 -14,-0.1 17,-2.1 -69,-0.1 2,-0.3 0.589 98.8 91.4-107.3 -13.2 19.0 6.0 3.2 76 76 A D E - E 0 91C 2 -15,-0.4 -15,-1.6 -3,-0.3 2,-0.3 -0.660 48.2-178.3 -93.7 144.8 16.6 6.8 6.0 77 77 A R E -DE 60 90C 7 13,-2.8 13,-2.4 -2,-0.3 2,-0.4 -0.992 23.0-141.6-141.3 147.9 15.7 10.2 7.4 78 78 A V E -DE 59 89C 0 -19,-2.9 -19,-2.0 -2,-0.3 2,-0.5 -0.836 23.1-148.6-102.6 141.6 13.6 11.8 10.0 79 79 A V E +DE 58 88C 0 9,-3.0 8,-3.2 -2,-0.4 9,-1.7 -0.968 22.0 169.1-117.3 125.8 12.0 15.1 9.0 80 80 A F E -DE 57 86C 0 -23,-2.3 -23,-2.8 -2,-0.5 6,-0.2 -0.894 22.5-128.0-131.3 161.2 11.3 17.8 11.6 81 81 A N E > -D 56 0C 5 4,-2.0 3,-2.4 -2,-0.3 -25,-0.2 -0.456 39.3 -88.0-103.9 178.9 10.2 21.4 11.5 82 82 A E T 3 S+ 0 0 82 -27,-1.2 -26,-0.1 1,-0.3 -28,-0.1 0.747 126.5 53.8 -54.2 -26.4 11.5 24.7 13.0 83 83 A N T 3 S- 0 0 66 -30,-0.2 -1,-0.3 2,-0.1 3,-0.1 0.141 119.5-106.7 -96.7 16.3 9.4 24.0 16.1 84 84 A N S < S+ 0 0 68 -3,-2.4 2,-0.4 1,-0.2 -2,-0.1 0.882 71.3 146.0 61.6 37.0 10.9 20.6 16.7 85 85 A Q - 0 0 95 -32,-0.1 -4,-2.0 -4,-0.1 2,-0.4 -0.899 54.6-112.4-107.1 138.8 7.7 18.9 15.6 86 86 A L E +E 80 0C 57 -2,-0.4 -6,-0.2 -6,-0.2 -35,-0.2 -0.540 33.8 176.0 -71.7 124.2 7.9 15.5 13.8 87 87 A A E - 0 0 16 -8,-3.2 -36,-0.4 -2,-0.4 2,-0.3 0.845 55.0 -65.1 -93.4 -43.1 6.8 15.9 10.2 88 88 A G E -E 79 0C 12 -9,-1.7 -9,-3.0 -38,-0.1 2,-0.5 -0.983 36.7 -95.1 172.7 177.6 7.6 12.3 9.1 89 89 A V E +E 78 0C 7 -2,-0.3 14,-2.8 -11,-0.2 2,-0.3 -0.989 45.3 170.7-121.3 118.7 10.0 9.4 8.4 90 90 A I E -EF 77 102C 0 -13,-2.4 -13,-2.8 -2,-0.5 2,-0.3 -0.835 14.4-156.5-128.2 167.0 11.2 9.0 4.8 91 91 A T E -EF 76 101C 1 10,-2.9 10,-1.9 -2,-0.3 -15,-0.2 -0.993 27.9-144.8-147.0 152.1 13.7 7.0 2.8 92 92 A H S > S+ 0 0 47 -17,-2.1 3,-2.1 -2,-0.3 2,-0.2 0.683 74.2 111.1 -82.0 -20.0 15.7 7.0 -0.4 93 93 A T T 3 S+ 0 0 62 1,-0.3 -86,-0.2 -18,-0.2 -2,-0.1 -0.355 87.3 9.4 -59.3 123.3 15.2 3.2 -0.5 94 94 A G T 3 S+ 0 0 78 1,-0.3 2,-0.3 -2,-0.2 -1,-0.3 0.554 109.1 103.3 84.0 6.5 12.9 2.2 -3.4 95 95 A A S < S- 0 0 23 -3,-2.1 -1,-0.3 4,-0.2 2,-0.2 -0.889 78.4-103.0-117.6 149.4 12.9 5.8 -4.9 96 96 A S S > S- 0 0 93 -2,-0.3 3,-2.2 4,-0.1 -3,-0.0 -0.506 75.4 -34.0 -77.1 145.6 14.8 6.8 -8.0 97 97 A G T 3 S- 0 0 71 1,-0.3 -2,-0.2 -2,-0.2 0, 0.0 -0.217 124.7 -19.8 53.0-127.0 18.0 8.8 -7.5 98 98 A N T 3 S+ 0 0 51 2,-0.0 -1,-0.3 0, 0.0 -2,-0.1 0.184 108.8 112.8 -98.5 14.4 17.9 11.2 -4.6 99 99 A N < - 0 0 52 -3,-2.2 2,-0.3 -7,-0.1 -4,-0.2 -0.150 55.7-134.7 -76.6-179.7 14.2 11.2 -4.4 100 100 A F - 0 0 9 -6,-0.1 2,-0.3 -10,-0.0 -8,-0.2 -0.887 15.6-160.7-135.8 168.4 12.2 9.8 -1.5 101 101 A V E -F 91 0C 56 -10,-1.9 -10,-2.9 -2,-0.3 2,-0.2 -0.928 38.2-100.2-138.9 155.7 9.2 7.6 -0.5 102 102 A E E -F 90 0C 90 -2,-0.3 -12,-0.3 -12,-0.2 2,-0.2 -0.570 32.9-116.8 -83.2 148.0 7.6 7.6 2.9 103 103 A b 0 0 16 -14,-2.8 -97,-0.2 -2,-0.2 -14,-0.2 -0.521 360.0 360.0 -76.4 150.3 8.3 5.0 5.4 104 104 A T 0 0 136 -99,-2.7 -98,-0.1 -2,-0.2 -1,-0.1 0.569 360.0 360.0-105.2 360.0 5.3 2.9 6.2