==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=22-APR-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 15-APR-11 3RJP . COMPND 2 MOLECULE: COVR; . SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PYOGENES; . AUTHOR N.M.HORSTMANN,R.G.BRENNAN,S.A.SHELBURNE . 96 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6153.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 59 61.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 15 15.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 8.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 8.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 29 30.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 133 A M 0 0 161 0, 0.0 2,-0.5 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 5.5 9.2 22.1 38.4 2 134 A Y + 0 0 33 1,-0.1 93,-0.0 2,-0.1 0, 0.0 -0.617 360.0 159.0 -71.9 121.1 11.1 19.7 36.1 3 135 A R + 0 0 208 -2,-0.5 14,-0.5 1,-0.1 -1,-0.1 0.224 38.9 104.2-131.7 16.9 12.6 17.1 38.5 4 136 A D S S+ 0 0 65 1,-0.2 2,-0.3 12,-0.1 13,-0.2 0.832 101.8 18.3 -64.9 -29.2 13.4 14.1 36.3 5 137 A L S S- 0 0 1 11,-0.2 2,-0.4 77,-0.0 -1,-0.2 -0.994 71.6-169.6-140.7 140.9 17.0 15.3 36.7 6 138 A V E -A 15 0A 77 9,-2.0 9,-3.0 -2,-0.3 2,-0.1 -0.973 20.5-131.6-136.8 120.0 18.4 17.7 39.3 7 139 A L E -A 14 0A 35 -2,-0.4 7,-0.2 7,-0.2 3,-0.1 -0.439 9.3-155.3 -71.5 141.1 21.9 19.2 39.1 8 140 A N E > > +A 13 0A 37 5,-3.1 5,-1.7 -2,-0.1 3,-1.0 -0.845 13.5 178.3-117.0 90.7 24.1 19.0 42.2 9 141 A P T 3 5S+ 0 0 65 0, 0.0 -1,-0.1 0, 0.0 5,-0.0 0.746 72.1 76.9 -65.2 -21.6 26.7 21.9 41.8 10 142 A Q T 3 5S+ 0 0 157 1,-0.3 -3,-0.0 -3,-0.1 -2,-0.0 0.860 124.3 4.7 -56.1 -38.0 28.2 21.0 45.2 11 143 A N T < 5S- 0 0 84 -3,-1.0 -1,-0.3 2,-0.1 3,-0.1 0.089 105.0-118.4-132.6 18.8 30.0 18.1 43.5 12 144 A R T 5S+ 0 0 118 -4,-0.4 11,-0.5 1,-0.1 2,-0.2 0.879 72.5 123.3 37.7 61.4 28.8 18.9 40.0 13 145 A S E < -AB 8 22A 3 -5,-1.7 -5,-3.1 9,-0.2 2,-0.4 -0.613 56.4-119.1-127.4-175.8 26.9 15.6 39.5 14 146 A V E -AB 7 21A 0 7,-2.1 7,-3.2 -7,-0.2 2,-0.5 -0.993 12.1-140.2-135.5 143.5 23.3 15.0 38.6 15 147 A N E -AB 6 20A 40 -9,-3.0 -9,-2.0 -2,-0.4 2,-0.7 -0.894 9.7-171.0-106.2 130.8 20.5 13.3 40.5 16 148 A R E > S- B 0 19A 40 3,-2.8 3,-2.2 -2,-0.5 2,-0.3 -0.917 72.9 -55.8-116.4 95.9 18.0 11.1 38.7 17 149 A G T 3 S- 0 0 53 -2,-0.7 -11,-0.1 -14,-0.5 -13,-0.0 -0.534 122.4 -18.9 66.8-127.4 15.5 10.3 41.4 18 150 A D T 3 S+ 0 0 163 -2,-0.3 2,-0.6 -3,-0.1 -1,-0.3 0.354 117.9 100.5 -92.5 5.3 17.5 8.8 44.2 19 151 A D E < -B 16 0A 82 -3,-2.2 -3,-2.8 2,-0.0 2,-0.5 -0.827 60.2-153.9 -97.1 118.4 20.4 8.0 42.0 20 152 A E E -B 15 0A 114 -2,-0.6 2,-0.5 -5,-0.2 -5,-0.2 -0.769 11.9-161.0 -90.1 129.7 23.4 10.3 42.1 21 153 A I E -B 14 0A 19 -7,-3.2 -7,-2.1 -2,-0.5 2,-0.2 -0.951 11.4-136.2-118.6 118.6 25.4 10.2 38.8 22 154 A S E -B 13 0A 96 -2,-0.5 2,-0.3 -9,-0.2 -9,-0.2 -0.489 25.0-168.2 -71.8 136.2 29.0 11.4 38.6 23 155 A L - 0 0 16 -11,-0.5 2,-0.0 -2,-0.2 47,-0.0 -0.936 19.5-120.9-127.7 148.9 29.8 13.6 35.6 24 156 A T > - 0 0 62 -2,-0.3 4,-2.6 1,-0.1 5,-0.2 -0.257 42.7 -95.7 -76.5 173.8 33.0 14.8 34.0 25 157 A K H > S+ 0 0 125 1,-0.2 4,-2.2 2,-0.2 5,-0.2 0.937 126.4 42.5 -57.4 -47.5 33.5 18.6 33.6 26 158 A R H > S+ 0 0 62 2,-0.2 4,-2.6 1,-0.2 5,-0.2 0.900 112.9 52.0 -68.1 -41.2 32.3 18.6 30.0 27 159 A E H > S+ 0 0 6 1,-0.2 4,-2.4 2,-0.2 5,-0.2 0.911 111.4 48.1 -61.3 -42.2 29.4 16.2 30.7 28 160 A Y H X S+ 0 0 7 -4,-2.6 4,-2.7 2,-0.2 -2,-0.2 0.939 112.7 47.3 -63.6 -47.9 28.2 18.5 33.5 29 161 A D H X S+ 0 0 25 -4,-2.2 4,-2.3 -5,-0.2 -2,-0.2 0.894 113.2 48.6 -61.2 -42.0 28.5 21.6 31.4 30 162 A L H X S+ 0 0 0 -4,-2.6 4,-1.8 2,-0.2 -1,-0.2 0.925 113.4 45.7 -65.7 -44.4 26.7 20.1 28.5 31 163 A L H X S+ 0 0 0 -4,-2.4 4,-2.5 -5,-0.2 5,-0.2 0.917 111.6 54.5 -64.7 -40.0 23.8 18.8 30.7 32 164 A N H X S+ 0 0 52 -4,-2.7 4,-2.7 -5,-0.2 5,-0.2 0.921 107.7 47.5 -59.7 -48.0 23.6 22.1 32.4 33 165 A I H X S+ 0 0 27 -4,-2.3 4,-1.3 1,-0.2 -1,-0.2 0.903 113.2 48.6 -63.7 -39.0 23.2 24.1 29.2 34 166 A L H < S+ 0 0 2 -4,-1.8 59,-0.4 1,-0.2 6,-0.3 0.915 114.8 44.9 -66.0 -41.8 20.5 21.8 27.9 35 167 A M H >< S+ 0 0 28 -4,-2.5 3,-1.2 1,-0.2 -2,-0.2 0.861 110.3 53.9 -70.4 -35.7 18.6 21.9 31.2 36 168 A T H 3< S+ 0 0 102 -4,-2.7 -1,-0.2 1,-0.3 -2,-0.2 0.793 113.8 44.3 -67.1 -28.0 19.0 25.7 31.5 37 169 A N T >< S+ 0 0 32 -4,-1.3 3,-2.1 -5,-0.2 -1,-0.3 -0.246 88.0 179.6-110.1 42.3 17.4 25.9 28.0 38 170 A M T < + 0 0 36 -3,-1.2 56,-0.2 1,-0.3 -3,-0.1 -0.125 66.9 9.4 -48.4 134.9 14.6 23.3 28.6 39 171 A N T 3 S+ 0 0 68 54,-3.0 2,-0.5 1,-0.2 -1,-0.3 0.388 104.0 108.9 74.3 -1.5 12.3 22.7 25.7 40 172 A R S < S- 0 0 158 -3,-2.1 2,-0.5 -6,-0.3 53,-0.3 -0.901 71.8-124.6-107.1 133.3 14.6 24.7 23.3 41 173 A V - 0 0 42 -2,-0.5 2,-0.5 51,-0.1 51,-0.2 -0.662 22.8-154.2 -80.4 122.9 16.6 22.9 20.7 42 174 A M B -C 91 0B 12 49,-2.9 49,-2.3 -2,-0.5 47,-0.1 -0.858 10.7-135.5-100.4 126.3 20.3 23.6 20.9 43 175 A T > - 0 0 43 -2,-0.5 4,-2.6 47,-0.2 5,-0.2 -0.328 24.3-112.0 -73.8 160.1 22.4 23.2 17.8 44 176 A R H > S+ 0 0 85 1,-0.2 4,-3.0 2,-0.2 5,-0.2 0.886 121.0 54.8 -59.6 -36.5 25.7 21.5 17.8 45 177 A E H > S+ 0 0 114 2,-0.2 4,-2.3 1,-0.2 -1,-0.2 0.898 108.8 46.7 -63.9 -40.3 27.3 24.9 17.1 46 178 A E H > S+ 0 0 82 2,-0.2 4,-1.4 1,-0.2 -2,-0.2 0.908 115.1 45.9 -68.3 -41.7 25.5 26.4 20.1 47 179 A L H X S+ 0 0 0 -4,-2.6 4,-2.7 2,-0.2 5,-0.4 0.907 112.6 51.1 -68.2 -39.6 26.5 23.5 22.4 48 180 A L H X S+ 0 0 32 -4,-3.0 4,-2.5 -5,-0.2 -2,-0.2 0.942 109.5 49.8 -62.2 -47.6 30.1 23.6 21.1 49 181 A S H < S+ 0 0 71 -4,-2.3 -1,-0.2 -5,-0.2 -2,-0.2 0.795 117.1 41.3 -63.8 -28.3 30.5 27.4 21.7 50 182 A N H < S+ 0 0 63 -4,-1.4 3,-0.5 -5,-0.1 -2,-0.2 0.881 124.1 32.5 -87.4 -40.5 29.2 27.0 25.3 51 183 A V H < S+ 0 0 6 -4,-2.7 -3,-0.2 1,-0.2 -2,-0.2 0.753 128.9 35.3 -89.9 -27.5 30.9 23.9 26.4 52 184 A W S < S+ 0 0 18 -4,-2.5 3,-0.3 -5,-0.4 -1,-0.2 -0.421 76.1 154.8-121.7 54.9 34.2 24.1 24.5 53 185 A K S S+ 0 0 121 -3,-0.5 -1,-0.1 1,-0.2 -2,-0.1 0.867 77.2 15.6 -49.0 -53.1 34.4 27.9 24.7 54 186 A Y S S+ 0 0 210 -3,-0.1 -1,-0.2 2,-0.1 -5,-0.1 0.361 94.4 128.3-110.2 5.4 38.2 28.3 24.3 55 187 A D - 0 0 61 -3,-0.3 2,-0.4 1,-0.1 3,-0.3 -0.249 46.1-144.9 -64.8 148.4 39.2 24.9 22.9 56 188 A E S S+ 0 0 177 1,-0.2 3,-0.1 3,-0.0 -2,-0.1 -0.870 76.9 16.7-112.6 146.5 41.3 24.5 19.8 57 189 A A S S+ 0 0 110 -2,-0.4 2,-0.4 1,-0.2 -1,-0.2 0.883 86.6 131.2 61.4 43.4 40.8 21.7 17.3 58 190 A V - 0 0 37 -3,-0.3 -1,-0.2 -6,-0.1 2,-0.1 -0.939 36.1-167.6-129.7 109.4 37.3 20.6 18.6 59 191 A E > - 0 0 142 -2,-0.4 3,-1.7 -3,-0.1 4,-0.4 -0.361 39.8 -94.7 -91.2 172.4 34.6 20.1 16.0 60 192 A T T >> S+ 0 0 31 1,-0.3 3,-1.3 2,-0.2 4,-1.0 0.738 114.6 74.8 -56.8 -26.9 30.9 19.8 16.3 61 193 A N H 3> S+ 0 0 75 1,-0.3 4,-2.1 2,-0.2 -1,-0.3 0.817 85.2 64.6 -57.8 -31.7 31.2 16.0 16.2 62 194 A V H <> S+ 0 0 31 -3,-1.7 4,-2.4 1,-0.2 -1,-0.3 0.827 95.4 58.9 -62.3 -31.2 32.5 16.1 19.8 63 195 A V H <> S+ 0 0 0 -3,-1.3 4,-1.9 -4,-0.4 -1,-0.2 0.953 106.0 47.5 -62.3 -47.4 29.1 17.4 20.9 64 196 A D H X S+ 0 0 40 -4,-1.0 4,-1.7 1,-0.2 -2,-0.2 0.913 110.1 53.2 -58.8 -44.3 27.4 14.3 19.5 65 197 A V H X S+ 0 0 60 -4,-2.1 4,-1.9 1,-0.2 -1,-0.2 0.922 109.7 47.2 -58.4 -45.6 30.0 12.1 21.3 66 198 A Y H X S+ 0 0 53 -4,-2.4 4,-2.6 1,-0.2 -1,-0.2 0.797 104.6 59.1 -70.0 -27.1 29.3 13.7 24.6 67 199 A I H X S+ 0 0 0 -4,-1.9 4,-2.7 2,-0.2 -1,-0.2 0.910 107.9 48.9 -64.8 -37.7 25.6 13.4 24.2 68 200 A R H X S+ 0 0 117 -4,-1.7 4,-2.3 2,-0.2 -2,-0.2 0.907 108.6 51.5 -67.3 -41.6 26.3 9.7 24.0 69 201 A Y H X S+ 0 0 126 -4,-1.9 4,-1.5 2,-0.2 -2,-0.2 0.936 112.0 48.5 -59.2 -45.1 28.5 9.8 27.1 70 202 A L H X S+ 0 0 0 -4,-2.6 4,-2.7 1,-0.2 3,-0.5 0.947 110.2 49.4 -60.2 -50.2 25.6 11.5 28.9 71 203 A R H X S+ 0 0 43 -4,-2.7 4,-2.3 1,-0.2 -1,-0.2 0.880 106.6 57.8 -57.9 -38.1 23.0 9.0 27.7 72 204 A G H < S+ 0 0 68 -4,-2.3 -1,-0.2 1,-0.2 -2,-0.2 0.872 115.1 35.5 -60.7 -37.3 25.2 6.1 28.8 73 205 A K H < S+ 0 0 82 -4,-1.5 -2,-0.2 -3,-0.5 -1,-0.2 0.816 128.9 30.6 -87.0 -32.7 25.3 7.4 32.4 74 206 A I H < S+ 0 0 0 -4,-2.7 -3,-0.2 -5,-0.2 -2,-0.2 0.752 92.6 94.3-102.7 -25.4 21.8 8.8 32.7 75 207 A D < - 0 0 42 -4,-2.3 6,-0.1 -5,-0.4 5,-0.1 -0.376 59.2-145.8 -72.9 148.8 19.4 6.8 30.5 76 208 A I > - 0 0 64 4,-0.2 3,-1.3 3,-0.2 -2,-0.0 -0.887 24.6-104.5-113.0 141.6 17.4 3.9 31.9 77 209 A P T 3 S+ 0 0 124 0, 0.0 3,-0.1 0, 0.0 -1,-0.0 -0.366 106.0 23.8 -64.0 142.5 16.5 0.7 30.0 78 210 A G T 3 S+ 0 0 96 1,-0.2 2,-0.3 -2,-0.0 0, 0.0 0.640 108.2 92.2 78.2 13.8 12.9 0.6 28.9 79 211 A K S < S- 0 0 109 -3,-1.3 -1,-0.2 0, 0.0 -3,-0.2 -0.999 82.3-105.3-140.3 139.3 12.5 4.4 29.0 80 212 A E - 0 0 111 -2,-0.3 -4,-0.2 1,-0.1 4,-0.1 -0.272 54.0 -82.9 -63.2 150.4 13.0 7.0 26.3 81 213 A S - 0 0 29 1,-0.1 -1,-0.1 2,-0.1 -10,-0.0 -0.117 23.3-135.3 -54.2 146.6 16.2 9.0 26.5 82 214 A Y S S+ 0 0 24 1,-0.2 2,-0.5 -3,-0.1 12,-0.3 0.718 98.8 55.1 -73.9 -22.3 16.4 12.1 28.7 83 215 A I S S- 0 0 0 10,-0.1 2,-0.4 -16,-0.1 10,-0.2 -0.964 81.5-152.4-116.5 120.0 18.1 13.9 25.8 84 216 A Q E -D 92 0B 52 8,-2.8 8,-1.9 -2,-0.5 2,-0.4 -0.742 8.1-136.5 -97.1 136.2 16.2 13.9 22.5 85 217 A T E -D 91 0B 76 -2,-0.4 2,-0.6 6,-0.2 6,-0.2 -0.752 14.2-164.9 -88.1 133.4 17.9 14.1 19.1 86 218 A V E >> -D 90 0B 32 4,-2.9 3,-2.7 -2,-0.4 4,-2.3 -0.893 23.9-128.5-121.4 97.5 16.2 16.5 16.7 87 219 A R T 34 S+ 0 0 238 -2,-0.6 4,-0.0 1,-0.3 -2,-0.0 -0.160 90.2 8.6 -48.3 127.6 17.5 15.8 13.2 88 220 A G T 34 S+ 0 0 83 1,-0.1 -1,-0.3 2,-0.0 -45,-0.0 0.382 129.9 56.1 82.1 -3.6 18.6 19.0 11.6 89 221 A M T <4 S- 0 0 110 -3,-2.7 2,-0.4 1,-0.3 -2,-0.2 0.597 97.6-121.1-129.9 -26.8 18.3 21.1 14.7 90 222 A G E < - D 0 86B 12 -4,-2.3 -4,-2.9 -47,-0.2 2,-0.3 -0.968 47.7 -30.2 128.3-130.6 20.4 19.6 17.5 91 223 A Y E -CD 42 85B 8 -49,-2.3 -49,-2.9 -2,-0.4 2,-0.3 -0.927 47.3-178.1-134.5 156.7 19.4 18.3 20.9 92 224 A V E - D 0 84B 1 -8,-1.9 -8,-2.8 -2,-0.3 2,-0.6 -0.997 24.7-141.4-156.1 149.8 16.8 19.1 23.5 93 225 A I - 0 0 1 -59,-0.4 -54,-3.0 -53,-0.3 2,-0.4 -0.983 31.4-161.8-112.8 120.5 15.6 18.1 27.0 94 226 A R - 0 0 98 -2,-0.6 2,-0.4 -12,-0.3 -56,-0.1 -0.887 17.9-130.3-110.3 133.8 11.8 18.2 27.0 95 227 A E 0 0 63 -2,-0.4 -93,-0.0 1,-0.1 -2,-0.0 -0.677 360.0 360.0 -79.4 131.4 9.5 18.4 30.1 96 228 A K 0 0 169 -2,-0.4 -1,-0.1 0, 0.0 0, 0.0 -0.241 360.0 360.0 -89.7 360.0 6.9 15.7 29.7