==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=11-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER HYDROLASE(ENDORIBONUCLEASE) 29-MAR-94 1RLS . COMPND 2 MOLECULE: RIBONUCLEASE T1; . SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS ORYZAE; . AUTHOR K.GOHDA,K.-I.OKA,K.-I.TOMITA,T.HAKOSHIMA . 104 1 2 2 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5604.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 59 56.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 27 26.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 4.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 7.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 15 14.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A A 0 0 152 0, 0.0 2,-0.2 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0 151.4 90.4 72.1 46.1 2 2 A a - 0 0 49 1,-0.1 10,-0.2 10,-0.1 3,-0.2 -0.594 360.0-156.6 -82.6 141.4 88.6 75.1 47.6 3 3 A D S S+ 0 0 85 8,-2.4 2,-0.4 1,-0.3 9,-0.2 0.832 92.4 15.7 -80.6 -39.0 89.7 78.6 47.0 4 4 A Y E S-A 11 0A 60 7,-2.3 7,-3.0 100,-0.1 2,-0.5 -0.995 70.8-160.3-131.9 134.5 87.9 79.7 50.2 5 5 A T E -A 10 0A 49 -2,-0.4 99,-1.6 5,-0.2 2,-0.8 -0.968 8.0-177.5-115.4 113.4 86.8 77.3 53.0 6 6 A b E > -A 9 0A 0 3,-2.9 3,-2.7 -2,-0.5 2,-0.4 -0.881 67.8 -60.9-107.8 96.9 84.1 78.8 55.3 7 7 A G T 3 S- 0 0 40 -2,-0.8 97,-0.1 1,-0.3 84,-0.0 -0.494 121.9 -17.6 66.6-120.0 83.5 76.0 57.9 8 8 A S T 3 S+ 0 0 122 -2,-0.4 2,-0.4 -3,-0.1 -1,-0.3 0.566 117.2 104.3 -91.9 -9.7 82.2 73.1 55.7 9 9 A N E < -A 6 0A 48 -3,-2.7 -3,-2.9 1,-0.0 2,-0.5 -0.627 56.4-156.6 -83.7 137.5 81.4 75.4 52.7 10 10 A a E -A 5 0A 71 -2,-0.4 2,-0.4 -5,-0.2 -5,-0.2 -0.942 10.5-173.2-112.2 120.4 83.8 75.4 49.8 11 11 A Y E -A 4 0A 6 -7,-3.0 -8,-2.4 -2,-0.5 -7,-2.3 -0.907 12.6-154.1-120.7 143.0 84.1 78.3 47.3 12 12 A S > - 0 0 36 -2,-0.4 4,-1.5 -9,-0.2 3,-0.1 -0.494 38.9-103.8 -94.9 172.6 86.0 78.7 44.1 13 13 A S H > S+ 0 0 61 1,-0.2 4,-3.0 2,-0.2 5,-0.2 0.839 121.9 57.5 -68.1 -34.4 87.1 82.2 42.9 14 14 A S H > S+ 0 0 71 2,-0.2 4,-1.8 1,-0.2 -1,-0.2 0.828 103.5 51.1 -67.5 -38.6 84.3 82.2 40.4 15 15 A D H > S+ 0 0 60 2,-0.2 4,-2.0 1,-0.2 -1,-0.2 0.886 114.1 47.2 -61.5 -46.0 81.6 81.7 43.1 16 16 A V H X S+ 0 0 3 -4,-1.5 4,-2.5 2,-0.2 -2,-0.2 0.922 110.9 49.0 -60.5 -52.6 83.3 84.7 44.9 17 17 A S H X S+ 0 0 67 -4,-3.0 4,-2.0 1,-0.2 -1,-0.2 0.791 112.2 49.0 -63.2 -33.4 83.4 86.9 41.9 18 18 A T H X S+ 0 0 81 -4,-1.8 4,-1.6 2,-0.2 -1,-0.2 0.894 112.7 47.0 -71.7 -41.2 79.7 86.2 41.0 19 19 A A H X S+ 0 0 7 -4,-2.0 4,-2.3 2,-0.2 3,-0.2 0.963 113.6 48.9 -59.4 -55.0 78.5 86.9 44.5 20 20 A Q H X S+ 0 0 18 -4,-2.5 4,-3.0 1,-0.3 5,-0.2 0.889 109.0 51.9 -52.9 -51.2 80.6 90.1 44.7 21 21 A A H X S+ 0 0 53 -4,-2.0 4,-1.7 2,-0.2 -1,-0.3 0.853 109.5 49.8 -57.4 -42.0 79.4 91.4 41.4 22 22 A A H X S+ 0 0 24 -4,-1.6 4,-1.7 -3,-0.2 -2,-0.2 0.964 115.4 45.3 -60.1 -48.6 75.7 90.9 42.4 23 23 A G H X S+ 0 0 0 -4,-2.3 4,-1.8 1,-0.2 -2,-0.2 0.865 111.2 49.2 -59.5 -54.9 76.5 92.8 45.7 24 24 A Y H X S+ 0 0 42 -4,-3.0 4,-2.9 1,-0.2 -1,-0.2 0.806 107.5 57.4 -60.2 -36.9 78.5 95.7 44.1 25 25 A Q H X S+ 0 0 103 -4,-1.7 4,-2.3 2,-0.2 -2,-0.2 0.924 107.4 45.7 -60.0 -51.1 75.7 96.3 41.6 26 26 A L H X>S+ 0 0 33 -4,-1.7 5,-2.3 1,-0.2 4,-0.8 0.914 113.8 52.7 -58.4 -41.2 73.1 96.7 44.3 27 27 A H H ><5S+ 0 0 40 -4,-1.8 3,-1.0 1,-0.2 -2,-0.2 0.939 107.8 47.5 -59.7 -51.4 75.5 99.0 46.0 28 28 A E H 3<5S+ 0 0 98 -4,-2.9 -1,-0.2 1,-0.3 -2,-0.2 0.871 114.7 49.2 -58.2 -37.3 76.2 101.2 43.0 29 29 A D H 3<5S- 0 0 90 -4,-2.3 -1,-0.3 -5,-0.2 -2,-0.2 0.484 108.7-122.4 -84.8 -9.0 72.4 101.4 42.5 30 30 A G T <<5 + 0 0 71 -3,-1.0 2,-0.3 -4,-0.8 -3,-0.2 0.753 69.0 129.9 73.2 27.6 71.6 102.3 46.1 31 31 A E < - 0 0 110 -5,-2.3 2,-0.3 -6,-0.2 -1,-0.3 -0.727 40.4-157.9-108.7 158.4 69.4 99.3 46.5 32 32 A T - 0 0 82 -2,-0.3 2,-0.3 -3,-0.1 5,-0.1 -0.893 2.7-150.8-135.3 165.7 69.2 96.6 49.1 33 33 A V B > +B 38 0B 37 5,-2.9 5,-3.5 -2,-0.3 3,-0.2 -0.995 52.7 15.9-137.4 142.6 67.9 93.0 49.5 34 34 A G T > 5S- 0 0 33 -2,-0.3 3,-1.1 35,-0.3 38,-0.1 -0.027 91.4 -71.1 86.1 171.4 66.6 91.0 52.4 35 35 A S T 3 5S+ 0 0 124 1,-0.3 -1,-0.2 36,-0.2 37,-0.1 0.682 135.8 49.8 -73.0 -20.1 65.3 91.9 55.9 36 36 A N T 3 5S- 0 0 98 -3,-0.2 -1,-0.3 2,-0.0 -2,-0.1 0.238 113.4-124.5 -98.5 2.5 68.9 92.7 56.9 37 37 A S T < 5 - 0 0 53 -3,-1.1 -3,-0.2 1,-0.1 -2,-0.1 0.950 34.0-129.2 47.7 80.9 69.2 94.9 53.8 38 38 A Y B + 0 0 31 1,-0.1 3,-2.0 2,-0.1 4,-0.1 0.788 45.4 159.9 65.4 38.4 85.6 95.6 60.6 45 45 A Y T 3 S+ 0 0 199 1,-0.3 -1,-0.1 2,-0.1 54,-0.0 0.788 72.0 65.2 -54.0 -31.1 85.1 95.5 64.4 46 46 A E T 3 S- 0 0 60 1,-0.0 -1,-0.3 55,-0.0 -2,-0.1 0.730 104.5-133.7 -64.4 -31.9 87.1 92.2 64.0 47 47 A G < - 0 0 52 -3,-2.0 -2,-0.1 1,-0.2 2,-0.1 0.860 32.2-177.2 78.2 38.7 90.1 94.1 62.9 48 48 A F - 0 0 30 1,-0.1 2,-1.7 -4,-0.1 -1,-0.2 -0.426 35.1-117.8 -67.0 145.5 91.0 91.9 59.9 49 49 A D + 0 0 164 -2,-0.1 -1,-0.1 2,-0.0 2,-0.0 -0.492 45.2 179.9 -83.8 61.2 94.2 92.9 58.1 50 50 A F - 0 0 24 -2,-1.7 37,-0.1 1,-0.1 38,-0.1 -0.374 24.3-149.0 -65.4 147.4 92.4 93.7 54.8 51 51 A S S S+ 0 0 122 36,-0.3 2,-0.3 2,-0.1 -1,-0.1 0.403 76.6 64.2-101.5 1.2 94.7 94.9 52.0 52 52 A V S S- 0 0 21 33,-0.1 2,-0.1 35,-0.1 -2,-0.0 -0.758 91.4-100.4-113.2 162.1 92.2 97.2 50.1 53 53 A S - 0 0 76 -2,-0.3 29,-0.3 1,-0.1 30,-0.2 -0.458 43.9 -80.3 -88.1 165.7 90.8 100.3 51.8 54 54 A S S S+ 0 0 76 27,-0.1 2,-0.2 -2,-0.1 -1,-0.1 -0.271 81.0 92.7 -82.6 169.1 87.5 101.0 53.4 55 55 A P - 0 0 59 0, 0.0 27,-0.8 0, 0.0 2,-0.3 0.503 67.9-164.8 -68.2 151.0 84.6 101.7 53.3 56 56 A Y E -CD 42 81C 26 -14,-0.5 -14,-1.8 25,-0.2 2,-0.3 -0.813 7.8-161.1-107.9 150.6 83.8 98.0 53.3 57 57 A Y E -CD 41 80C 32 23,-2.2 23,-2.4 -2,-0.3 2,-0.4 -0.992 8.1-142.7-135.3 139.8 80.5 96.3 52.4 58 58 A E E +CD 40 79C 17 -18,-2.9 -18,-1.4 -2,-0.3 21,-0.2 -0.845 19.6 172.5-107.3 141.1 79.2 92.9 53.2 59 59 A W E - D 0 78C 2 19,-2.1 19,-3.5 -2,-0.4 -39,-0.1 -0.987 33.9-109.6-145.0 132.0 77.2 90.7 50.9 60 60 A P E - D 0 77C 1 0, 0.0 8,-0.5 0, 0.0 2,-0.4 -0.267 22.5-160.5 -61.2 146.7 76.1 87.0 51.5 61 61 A I E - D 0 76C 9 15,-1.6 15,-0.5 12,-0.3 2,-0.4 -0.973 17.8-140.7-127.5 134.1 77.6 84.2 49.5 62 62 A L > - 0 0 32 4,-0.6 3,-2.1 -2,-0.4 12,-0.1 -0.929 17.0-142.8-108.3 136.6 75.6 81.0 49.4 63 63 A S T 3 S+ 0 0 85 -2,-0.4 -53,-0.1 1,-0.3 -1,-0.1 0.521 102.6 69.6 -65.4 -15.4 76.7 77.4 49.6 64 64 A S T 3 S- 0 0 78 2,-0.1 -1,-0.3 1,-0.0 3,-0.1 0.708 108.5-124.9 -77.7 -19.6 73.9 76.7 47.2 65 65 A G S < S+ 0 0 49 -3,-2.1 -2,-0.1 1,-0.4 2,-0.1 0.329 72.1 124.1 88.7 -5.0 75.8 78.5 44.5 66 66 A D - 0 0 116 1,-0.1 -4,-0.6 -5,-0.0 2,-0.4 -0.395 70.0-103.9 -82.9 163.1 72.8 80.8 44.0 67 67 A V - 0 0 65 -2,-0.1 -6,-0.1 -6,-0.1 -1,-0.1 -0.821 44.2 -99.9 -89.8 133.9 72.9 84.6 44.3 68 68 A Y + 0 0 9 -8,-0.5 3,-0.1 -2,-0.4 -1,-0.1 -0.302 51.2 160.9 -54.2 127.4 71.4 86.0 47.5 69 69 A S - 0 0 103 1,-0.6 -35,-0.3 -36,-0.0 2,-0.2 0.236 60.4 -59.7-134.7 13.3 67.9 87.3 46.8 70 70 A G S S+ 0 0 33 -37,-0.2 -1,-0.6 1,-0.1 2,-0.1 -0.644 91.1 72.1 128.7 168.1 66.4 87.4 50.4 71 71 A G S S- 0 0 60 -2,-0.2 -36,-0.2 -3,-0.1 -1,-0.1 -0.408 98.7 -1.3 84.3-165.0 65.6 85.1 53.2 72 72 A S - 0 0 106 1,-0.1 -2,-0.1 -2,-0.1 3,-0.1 -0.390 57.3-157.2 -61.2 131.6 68.4 83.6 55.4 73 73 A P - 0 0 18 0, 0.0 3,-0.3 0, 0.0 -12,-0.3 0.411 29.6-140.1 -89.4 -3.3 71.8 84.8 54.3 74 74 A G - 0 0 44 1,-0.2 -12,-0.1 -14,-0.1 -3,-0.0 -0.138 38.5 -65.3 70.7-158.2 73.5 81.8 55.9 75 75 A A S S+ 0 0 26 -69,-0.1 17,-2.3 -3,-0.1 2,-0.3 0.593 101.3 88.9-100.5 -11.9 76.9 82.4 57.7 76 76 A D E -DE 61 91C 3 -15,-0.5 -15,-1.6 -3,-0.3 2,-0.3 -0.771 48.5-177.4-101.4 145.1 79.2 83.4 54.9 77 77 A R E -DE 60 90C 9 13,-3.3 13,-2.8 -2,-0.3 2,-0.3 -0.990 24.3-141.2-141.3 148.5 80.0 86.7 53.4 78 78 A V E -DE 59 89C 0 -19,-3.5 -19,-2.1 -2,-0.3 2,-0.5 -0.701 21.4-154.3 -99.5 143.6 82.0 88.5 50.7 79 79 A V E +DE 58 88C 0 9,-2.0 8,-2.8 -2,-0.3 9,-1.6 -0.988 20.9 169.3-120.8 117.3 83.5 91.9 51.7 80 80 A F E -DE 57 86C 0 -23,-2.4 -23,-2.2 -2,-0.5 6,-0.2 -0.915 20.7-134.7-128.9 163.1 84.2 94.4 48.9 81 81 A N E > -D 56 0C 3 4,-1.8 3,-1.9 -2,-0.3 -25,-0.2 -0.370 40.0 -82.6-109.7-171.7 85.2 98.0 48.8 82 82 A E T 3 S+ 0 0 70 -27,-0.8 -26,-0.1 1,-0.3 -28,-0.1 0.797 127.8 54.6 -60.6 -27.6 84.1 101.2 47.0 83 83 A N T 3 S- 0 0 117 -30,-0.2 -1,-0.3 2,-0.1 3,-0.1 0.294 119.0-107.3 -89.8 10.4 86.3 100.2 44.1 84 84 A N S < S+ 0 0 65 -3,-1.9 2,-0.4 1,-0.3 -2,-0.1 0.889 71.1 152.7 60.3 39.7 84.8 96.7 43.7 85 85 A Q - 0 0 78 -32,-0.1 -4,-1.8 -4,-0.1 2,-0.6 -0.878 51.2-117.8 -98.6 137.9 88.0 95.3 45.2 86 86 A L E +E 80 0C 56 -2,-0.4 -6,-0.2 -6,-0.2 3,-0.1 -0.669 32.4 176.9 -75.2 121.5 87.7 92.0 47.1 87 87 A A E - 0 0 15 -8,-2.8 -36,-0.3 -2,-0.6 2,-0.3 0.786 56.8 -71.1 -91.4 -38.2 88.7 92.7 50.7 88 88 A G E -E 79 0C 10 -9,-1.6 -9,-2.0 -38,-0.1 2,-0.5 -0.947 37.4 -88.5 164.0 177.5 88.0 89.0 51.8 89 89 A V E +E 78 0C 4 -2,-0.3 14,-2.8 14,-0.2 2,-0.3 -0.975 44.9 177.7-120.8 124.8 85.6 86.1 52.5 90 90 A I E -EF 77 102C 0 -13,-2.8 -13,-3.3 -2,-0.5 2,-0.3 -0.833 9.3-168.9-129.5 162.3 84.3 85.8 56.0 91 91 A T E -EF 76 101C 2 10,-2.3 10,-2.1 -2,-0.3 -15,-0.2 -0.995 33.6-137.5-151.1 156.4 82.0 83.7 58.1 92 92 A H S > S+ 0 0 40 -17,-2.3 3,-1.7 -2,-0.3 2,-0.4 0.547 75.0 112.4 -85.7 -11.6 80.1 83.3 61.3 93 93 A T T 3 S+ 0 0 59 1,-0.3 -86,-0.2 -18,-0.2 -2,-0.1 -0.513 88.7 6.8 -68.3 117.5 81.1 79.6 61.4 94 94 A G T 3 S+ 0 0 79 -2,-0.4 2,-0.4 1,-0.4 -1,-0.3 0.578 109.4 106.7 85.2 9.8 83.6 78.8 64.2 95 95 A A S < S- 0 0 21 -3,-1.7 -1,-0.4 4,-0.2 2,-0.1 -0.918 75.3-108.6-119.7 146.1 83.2 82.4 65.6 96 96 A S S > S- 0 0 91 -2,-0.4 3,-2.6 4,-0.1 -3,-0.0 -0.407 72.8 -30.9 -75.3 151.9 81.3 83.1 68.8 97 97 A G T 3 S- 0 0 66 1,-0.3 -2,-0.2 -2,-0.1 0, 0.0 -0.154 126.7 -20.9 47.8-124.8 77.9 84.9 68.7 98 98 A N T 3 S+ 0 0 140 2,-0.0 -1,-0.3 0, 0.0 -2,-0.1 0.111 106.0 118.3 -98.0 13.5 77.7 87.3 65.8 99 99 A N < - 0 0 80 -3,-2.6 2,-0.3 -7,-0.1 -4,-0.2 -0.288 54.6-134.8 -74.2 166.7 81.4 87.6 65.3 100 100 A F - 0 0 17 -6,-0.1 2,-0.3 -2,-0.1 -8,-0.2 -0.851 15.0-169.3-119.2 160.6 83.2 86.7 62.1 101 101 A V E -F 91 0C 61 -10,-2.1 -10,-2.3 -2,-0.3 2,-0.3 -0.859 36.7 -94.6-140.1 161.1 86.4 84.8 61.4 102 102 A E E -F 90 0C 94 -2,-0.3 -12,-0.3 -12,-0.2 2,-0.3 -0.667 30.2-116.9 -84.7 151.5 88.1 84.5 57.9 103 103 A b 0 0 14 -14,-2.8 -14,-0.2 -2,-0.3 -97,-0.2 -0.587 360.0 360.0 -81.1 143.9 87.6 81.8 55.4 104 104 A T 0 0 138 -99,-1.6 -1,-0.1 -2,-0.3 -98,-0.1 0.567 360.0 360.0 -93.8 360.0 90.9 79.9 54.8