==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=11-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER METAL BINDING PROTEIN 26-NOV-03 1RLY . COMPND 2 MOLECULE: TRANSCRIPTION INITIATION FACTOR IIB; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR M.GHOSH,M.IKURA . 58 1 1 1 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5579.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 22 37.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 5 8.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 12 20.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 1.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 1 1.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 2 A A 0 0 120 0, 0.0 2,-1.3 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0 120.5 -9.3 15.7 9.2 2 3 A S + 0 0 132 1,-0.2 3,-0.0 0, 0.0 0, 0.0 -0.348 360.0 108.4 -88.1 54.7 -9.9 16.5 5.6 3 4 A T S S+ 0 0 126 -2,-1.3 2,-0.3 2,-0.0 -1,-0.2 -0.124 76.0 33.1-120.8 34.8 -6.6 18.2 5.1 4 5 A S S S- 0 0 72 1,-0.1 3,-0.1 -3,-0.1 43,-0.0 -0.904 71.6-117.7-164.4-170.4 -4.9 15.6 3.0 5 6 A R S S+ 0 0 196 1,-0.3 2,-0.5 -2,-0.3 -1,-0.1 0.768 89.4 18.2-108.2 -74.7 -5.3 13.0 0.3 6 7 A L + 0 0 83 38,-0.1 -1,-0.3 1,-0.1 0, 0.0 -0.910 59.3 144.2-109.0 126.7 -4.4 9.5 1.5 7 8 A D S S+ 0 0 118 -2,-0.5 -1,-0.1 -3,-0.1 -3,-0.0 -0.171 75.6 22.0-153.8 48.3 -4.1 8.7 5.2 8 9 A A - 0 0 85 0, 0.0 3,-0.2 0, 0.0 -2,-0.1 0.073 67.7-153.2-174.3 -55.8 -5.4 5.1 5.7 9 10 A L - 0 0 62 1,-0.2 2,-2.9 2,-0.0 -3,-0.0 0.989 13.5-154.2 58.4 64.5 -5.2 2.9 2.5 10 11 A P + 0 0 124 0, 0.0 -1,-0.2 0, 0.0 0, 0.0 -0.343 33.0 159.2 -70.1 67.0 -8.1 0.6 3.5 11 12 A R - 0 0 101 -2,-2.9 -2,-0.0 -3,-0.2 0, 0.0 0.362 37.3-133.3 -68.2-151.3 -6.8 -2.3 1.4 12 13 A V - 0 0 123 1,-0.3 2,-0.3 0, 0.0 -1,-0.1 0.531 41.3 -88.8-133.4 -65.2 -7.8 -5.9 2.0 13 14 A T - 0 0 26 8,-0.1 -1,-0.3 20,-0.0 8,-0.2 -0.974 63.2 -24.6 169.3-166.1 -5.0 -8.5 2.1 14 15 A a - 0 0 2 6,-1.5 5,-0.1 3,-1.4 6,-0.1 -0.555 40.9-145.2 -75.9 131.8 -2.9 -10.8 -0.1 15 16 A P S S+ 0 0 107 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 0.857 109.2 38.3 -60.8 -33.9 -4.5 -12.0 -3.4 16 17 A N S S+ 0 0 131 1,-0.3 3,-0.1 4,-0.1 -2,-0.1 0.819 135.8 23.0 -85.3 -32.0 -2.7 -15.3 -2.8 17 18 A H - 0 0 26 3,-0.2 -3,-1.4 1,-0.1 -1,-0.3 -0.716 60.2-178.5-138.3 88.2 -3.3 -15.2 0.9 18 19 A P S S+ 0 0 83 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.687 91.1 55.3 -56.4 -15.3 -6.3 -13.0 2.0 19 20 A D S S+ 0 0 143 -6,-0.1 2,-0.2 -5,-0.1 -2,-0.1 0.945 91.4 74.6 -82.0 -56.8 -5.2 -14.0 5.4 20 21 A A S S- 0 0 22 -6,-0.1 -6,-1.5 1,-0.1 2,-0.6 -0.425 82.7-134.5 -64.2 123.6 -1.6 -12.9 5.3 21 22 A I - 0 0 108 -2,-0.2 -8,-0.1 -8,-0.2 -1,-0.1 -0.726 15.9-122.9 -86.0 118.1 -1.4 -9.1 5.5 22 23 A L - 0 0 9 -2,-0.6 11,-0.3 11,-0.2 2,-0.2 -0.260 31.9-125.9 -55.8 138.0 0.8 -7.4 3.0 23 24 A V B -A 32 0A 77 9,-3.7 9,-2.8 1,-0.1 2,-0.2 -0.630 22.6-100.3 -93.6 151.7 3.4 -5.3 4.9 24 25 A E S S+ 0 0 147 7,-0.3 3,-0.2 -2,-0.2 7,-0.2 -0.456 93.6 6.7 -70.4 136.6 4.0 -1.6 4.3 25 26 A D S S- 0 0 85 15,-0.2 2,-1.3 -2,-0.2 3,-0.5 0.961 78.7-123.5 55.2 97.0 7.0 -0.8 2.2 26 27 A Y S S- 0 0 119 4,-0.9 -1,-0.2 1,-0.3 4,-0.2 -0.505 81.7 -45.8 -68.1 93.6 8.7 -3.9 0.7 27 28 A R S S- 0 0 208 -2,-1.3 -1,-0.3 -3,-0.2 -2,-0.1 0.871 136.7 -20.2 45.4 40.1 12.2 -3.4 2.0 28 29 A A S S+ 0 0 83 -3,-0.5 -1,-0.2 2,-0.2 -2,-0.1 0.753 134.9 76.8 97.7 35.2 11.8 0.2 1.0 29 30 A G S S- 0 0 29 1,-0.4 -4,-0.2 -5,-0.1 -2,-0.1 -0.194 86.4 -53.2-137.2-131.5 9.0 -0.3 -1.5 30 31 A D S S- 0 0 44 -5,-0.3 -4,-0.9 -4,-0.2 2,-0.7 0.233 87.1 -32.1 -98.0-140.6 5.2 -0.9 -1.5 31 32 A M E - B 0 40A 25 9,-2.9 9,-1.0 -6,-0.2 2,-0.6 -0.760 60.5-159.4 -90.2 110.5 3.1 -3.5 0.3 32 33 A I E -AB 23 39A 33 -9,-2.8 -9,-3.7 -2,-0.7 7,-0.2 -0.814 10.4-142.8 -96.8 118.6 5.0 -6.7 0.6 33 34 A a > - 0 0 0 5,-1.9 4,-4.4 -2,-0.6 5,-0.2 -0.672 10.2-145.4 -80.4 106.8 3.1 -9.9 1.2 34 35 A P T 4 S+ 0 0 69 0, 0.0 -1,-0.2 0, 0.0 -12,-0.1 0.642 96.6 42.4 -46.8 -17.2 5.2 -12.0 3.6 35 36 A E T 4 S+ 0 0 140 -18,-0.1 -2,-0.0 3,-0.1 -14,-0.0 0.884 135.8 12.2-101.5 -50.4 4.1 -15.1 1.9 36 37 A C T 4 S- 0 0 59 2,-0.1 3,-0.1 -19,-0.1 -3,-0.0 0.632 94.4-140.2 -96.2 -13.3 4.2 -14.4 -1.9 37 38 A G < + 0 0 26 -4,-4.4 2,-0.0 1,-0.2 -11,-0.0 0.704 38.5 170.3 64.2 22.3 6.1 -11.3 -1.0 38 39 A L - 0 0 41 -5,-0.2 -5,-1.9 -6,-0.1 2,-0.5 -0.320 26.6-137.9 -65.6 144.3 4.2 -9.4 -3.6 39 40 A V E +B 32 0A 53 -7,-0.2 2,-0.4 -3,-0.1 -7,-0.2 -0.931 23.5 175.5-112.1 124.7 4.6 -5.6 -3.7 40 41 A V E +B 31 0A 49 -9,-1.0 -9,-2.9 -2,-0.5 2,-0.2 -0.988 36.9 51.0-128.2 135.3 1.6 -3.3 -4.3 41 42 A G + 0 0 36 -2,-0.4 -11,-0.1 -11,-0.2 -2,-0.0 -0.605 22.7 165.9 130.0 168.6 1.6 0.4 -4.2 42 43 A D + 0 0 147 -2,-0.2 -2,-0.0 -13,-0.1 -1,-0.0 0.068 67.7 66.0 177.1 -43.5 3.3 3.5 -5.6 43 44 A R + 0 0 179 1,-0.1 0, 0.0 3,-0.0 0, 0.0 0.829 38.0 133.1 -65.7-111.6 1.1 6.6 -5.0 44 45 A V - 0 0 78 2,-0.1 3,-0.2 3,-0.0 -1,-0.1 0.467 68.5-125.7 72.8 -0.5 0.8 7.5 -1.3 45 46 A I - 0 0 25 1,-0.1 2,-0.6 2,-0.1 -3,-0.0 0.256 27.1 -79.8 47.4 179.0 1.6 11.1 -2.4 46 47 A D + 0 0 160 1,-0.1 -1,-0.1 3,-0.0 -2,-0.1 -0.926 65.3 137.5-120.0 107.0 4.4 13.1 -0.8 47 48 A V > + 0 0 83 -2,-0.6 3,-1.8 -3,-0.2 2,-1.2 0.659 35.5 108.9-116.3 -32.1 3.6 14.7 2.6 48 49 A G T 3 S+ 0 0 76 1,-0.2 3,-0.1 3,-0.0 -1,-0.0 -0.286 74.0 54.5 -53.6 90.7 6.8 14.1 4.6 49 50 A S T 3 + 0 0 108 -2,-1.2 2,-0.9 1,-0.2 -1,-0.2 0.099 66.6 110.7 173.4 -35.7 8.1 17.7 4.7 50 51 A E S < S- 0 0 137 -3,-1.8 2,-1.6 1,-0.1 -1,-0.2 -0.499 105.0 -63.5 -67.0 102.3 5.4 19.9 6.1 51 52 A W + 0 0 219 -2,-0.9 -1,-0.1 1,-0.2 -3,-0.0 -0.334 69.2 178.3 57.2 -86.8 6.7 20.9 9.5 52 53 A R + 0 0 196 -2,-1.6 2,-0.3 1,-0.2 -1,-0.2 0.972 30.3 120.4 51.4 82.4 6.8 17.5 11.0 53 54 A T - 0 0 87 3,-0.0 2,-0.7 0, 0.0 -1,-0.2 -0.955 67.2-105.1-159.8 174.5 8.3 18.1 14.5 54 55 A F S S- 0 0 174 1,-0.4 0, 0.0 -2,-0.3 0, 0.0 -0.781 76.5 -58.5-114.9 86.9 7.6 17.9 18.2 55 56 A S - 0 0 110 -2,-0.7 -1,-0.4 2,-0.0 2,-0.3 0.296 61.9-115.9 60.1 162.8 6.9 21.3 19.6 56 57 A N - 0 0 115 2,-0.2 -3,-0.0 -3,-0.1 -1,-0.0 -0.824 4.8-132.6-129.7 168.7 9.2 24.3 19.2 57 58 A D 0 0 162 -2,-0.3 -1,-0.1 0, 0.0 -2,-0.0 0.777 360.0 360.0 -90.6 -31.7 11.2 26.6 21.5 58 59 A K 0 0 201 0, 0.0 -2,-0.2 0, 0.0 0, 0.0 -0.407 360.0 360.0 -80.0 360.0 10.2 29.8 19.9