==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=4-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER SIGNALING PROTEIN 15-OCT-07 2RM8 . COMPND 2 MOLECULE: SENSORY RHODOPSIN II TRANSDUCER; . SOURCE 2 ORGANISM_SCIENTIFIC: NATRONOMONAS PHARAONIS; . AUTHOR K.HAYASHI,Y.SUDO,J.JEE,M.MISHIMA,H.HARA,N.KAMO,C.KOJIMA . 68 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8046.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 33 48.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 4.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 16.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 19 27.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 100 A M 0 0 243 0, 0.0 3,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 141.8 41.6 -20.1 -13.9 2 101 A G + 0 0 93 1,-0.2 2,-0.3 0, 0.0 3,-0.0 0.668 360.0 78.9 80.9 19.9 37.8 -20.4 -14.4 3 102 A D + 0 0 151 1,-0.0 -1,-0.2 3,-0.0 3,-0.1 -0.985 38.9 89.9-159.0 146.1 37.0 -17.2 -12.4 4 103 A G S S+ 0 0 66 -2,-0.3 2,-0.3 1,-0.2 -1,-0.0 0.024 84.6 49.1 153.3 -29.4 37.0 -13.3 -13.0 5 104 A D + 0 0 119 6,-0.0 -1,-0.2 3,-0.0 2,-0.2 -0.981 53.1 125.8-142.5 145.5 33.5 -12.5 -14.3 6 105 A L + 0 0 122 -2,-0.3 6,-0.4 -3,-0.1 -3,-0.0 -0.492 22.3 116.8-160.1-137.8 29.9 -13.4 -13.3 7 106 A D >> + 0 0 71 4,-0.2 4,-2.7 -2,-0.2 3,-1.8 0.787 38.2 176.2 58.8 36.0 26.8 -11.2 -12.5 8 107 A V T 34 + 0 0 122 1,-0.3 -1,-0.1 2,-0.2 -3,-0.0 0.309 58.3 89.5 -63.5 6.7 24.9 -12.8 -15.5 9 108 A E T 34 S- 0 0 158 1,-0.0 -1,-0.3 0, 0.0 -2,-0.1 0.801 129.9 -22.1 -62.4 -32.7 21.6 -10.8 -14.6 10 109 A L T <4 S- 0 0 65 -3,-1.8 -2,-0.2 6,-0.0 7,-0.1 0.361 99.8-123.3-155.4 -31.2 23.1 -8.1 -16.9 11 110 A E S >< S- 0 0 105 -4,-2.7 3,-0.6 1,-0.1 2,-0.5 0.881 73.4 -7.3 76.5 112.5 26.9 -8.9 -16.9 12 111 A T T 3 S- 0 0 85 -6,-0.4 -1,-0.1 1,-0.2 -5,-0.1 0.093 88.9-115.9 70.6 -20.1 29.7 -6.5 -15.8 13 112 A R T 3 S+ 0 0 99 -2,-0.5 -1,-0.2 2,-0.2 3,-0.1 0.625 80.4 127.0 63.1 20.5 27.3 -3.5 -15.6 14 113 A R S < S+ 0 0 205 -3,-0.6 2,-0.3 1,-0.2 -2,-0.1 0.444 75.9 36.4 -79.8 -2.7 29.1 -1.7 -18.5 15 114 A E - 0 0 86 -4,-0.2 -2,-0.2 -5,-0.1 -1,-0.2 -0.916 62.3-166.6-155.5 119.8 25.7 -1.3 -20.3 16 115 A D S S- 0 0 115 -2,-0.3 -2,-0.0 -3,-0.1 -6,-0.0 -0.111 70.1 -82.2 -98.8 28.2 22.4 -0.6 -18.5 17 116 A E S S+ 0 0 151 -7,-0.1 -2,-0.0 1,-0.1 5,-0.0 0.867 74.7 166.5 64.8 40.4 20.3 -1.5 -21.6 18 117 A I - 0 0 110 1,-0.1 -1,-0.1 3,-0.0 -3,-0.0 0.470 56.6-103.5 -68.7 -4.1 21.0 2.1 -22.7 19 118 A G S S+ 0 0 35 4,-0.0 3,-0.2 0, 0.0 -1,-0.1 0.291 101.0 102.8 95.5 -3.5 19.8 1.5 -26.4 20 119 A D S S+ 0 0 154 1,-0.2 3,-0.1 3,-0.0 -5,-0.0 0.718 82.8 53.1 -73.9 -21.6 23.3 1.2 -28.0 21 120 A L S S+ 0 0 91 1,-0.3 2,-0.3 0, 0.0 -1,-0.2 0.670 125.2 5.0 -84.1 -21.9 22.7 -2.6 -28.0 22 121 A Y + 0 0 191 -3,-0.2 -1,-0.3 2,-0.0 2,-0.2 -0.910 67.5 135.4-169.3 136.4 19.3 -2.5 -29.8 23 122 A A - 0 0 52 -2,-0.3 2,-0.3 -3,-0.1 -3,-0.0 -0.705 42.1-100.0-155.9-155.6 16.9 0.0 -31.5 24 123 A A > - 0 0 37 -2,-0.2 4,-1.3 0, 0.0 2,-0.8 -0.981 13.3-133.1-154.2 136.8 14.8 0.4 -34.7 25 124 A F T 4 S+ 0 0 171 -2,-0.3 0, 0.0 1,-0.2 0, 0.0 -0.129 100.6 44.8 -84.9 36.4 15.2 2.2 -38.0 26 125 A D T 4 S+ 0 0 110 -2,-0.8 -1,-0.2 0, 0.0 4,-0.2 0.471 109.3 44.0-145.4 -48.9 11.7 3.8 -38.1 27 126 A E T >> S+ 0 0 119 1,-0.2 4,-2.6 2,-0.2 3,-1.3 0.908 116.4 49.9 -71.9 -37.6 10.8 5.3 -34.6 28 127 A M H 3X S+ 0 0 94 -4,-1.3 4,-0.5 1,-0.2 -1,-0.2 0.704 105.8 59.3 -71.5 -18.1 14.4 6.9 -34.3 29 128 A R H 34 S+ 0 0 153 -5,-0.2 -1,-0.2 2,-0.1 -2,-0.2 0.457 118.5 27.5 -87.1 -5.3 13.8 8.3 -37.9 30 129 A Q H <> S+ 0 0 99 -3,-1.3 4,-0.7 -4,-0.2 3,-0.3 0.589 107.6 67.1-128.5 -25.7 10.7 10.3 -36.7 31 130 A S H < S+ 0 0 79 -4,-2.6 3,-0.2 1,-0.2 -3,-0.1 0.856 110.8 39.3 -67.9 -32.0 11.2 11.0 -33.0 32 131 A V T < S+ 0 0 129 -4,-0.5 -1,-0.2 -5,-0.2 3,-0.2 0.535 97.6 80.8 -90.0 -9.6 14.2 13.4 -33.8 33 132 A R T 4 S- 0 0 185 -3,-0.3 2,-0.2 1,-0.3 -2,-0.2 0.839 116.8 -14.3 -69.7 -32.5 12.4 14.8 -36.9 34 133 A T S < S+ 0 0 89 -4,-0.7 -1,-0.3 -3,-0.2 -4,-0.0 -0.825 94.9 93.1-169.4 134.1 10.4 17.2 -34.6 35 134 A S S > S+ 0 0 68 -2,-0.2 4,-2.4 -3,-0.2 5,-0.2 -0.101 79.2 61.2 178.6 -47.9 9.8 17.3 -30.8 36 135 A L H > S+ 0 0 151 1,-0.2 4,-2.0 2,-0.2 5,-0.1 0.892 108.9 44.5 -67.0 -40.5 12.4 19.6 -29.2 37 136 A E H > S+ 0 0 159 2,-0.2 4,-2.1 1,-0.2 -1,-0.2 0.734 113.5 52.0 -75.6 -22.7 11.3 22.8 -31.2 38 137 A D H > S+ 0 0 103 2,-0.2 4,-2.4 3,-0.2 -2,-0.2 0.874 109.7 48.0 -79.9 -37.6 7.6 21.9 -30.4 39 138 A A H X S+ 0 0 48 -4,-2.4 4,-2.4 2,-0.2 -2,-0.2 0.914 113.8 48.7 -64.3 -42.2 8.3 21.6 -26.7 40 139 A K H X S+ 0 0 127 -4,-2.0 4,-2.6 2,-0.2 5,-0.2 0.954 111.2 49.7 -58.3 -50.7 10.1 25.0 -27.0 41 140 A N H X S+ 0 0 97 -4,-2.1 4,-2.6 2,-0.2 -2,-0.2 0.898 113.0 46.5 -58.6 -42.6 7.1 26.5 -28.9 42 141 A A H X S+ 0 0 55 -4,-2.4 4,-2.3 2,-0.2 -1,-0.2 0.942 115.0 45.5 -65.1 -48.3 4.6 25.2 -26.2 43 142 A R H X S+ 0 0 203 -4,-2.4 4,-0.6 2,-0.2 -2,-0.2 0.852 116.7 46.5 -63.7 -36.7 6.8 26.4 -23.2 44 143 A E H >X S+ 0 0 90 -4,-2.6 4,-2.8 -5,-0.2 3,-0.9 0.937 112.4 48.4 -72.5 -47.2 7.4 29.8 -25.0 45 144 A D H 3X S+ 0 0 109 -4,-2.6 4,-2.0 1,-0.3 -2,-0.2 0.885 107.8 56.0 -62.2 -38.2 3.7 30.3 -26.0 46 145 A A H 3< S+ 0 0 65 -4,-2.3 -1,-0.3 -5,-0.2 -2,-0.2 0.709 113.4 41.6 -67.0 -21.4 2.6 29.5 -22.4 47 146 A E H XX S+ 0 0 121 -3,-0.9 3,-1.7 -4,-0.6 4,-0.9 0.857 111.8 53.7 -87.1 -44.7 4.9 32.3 -21.1 48 147 A Q H 3X S+ 0 0 98 -4,-2.8 4,-2.5 1,-0.3 3,-0.3 0.797 96.9 67.7 -61.7 -29.0 3.9 34.8 -23.9 49 148 A A H 3< S+ 0 0 37 -4,-2.0 -1,-0.3 1,-0.2 4,-0.2 0.709 103.8 44.9 -63.2 -22.1 0.2 34.3 -23.0 50 149 A Q H <4 S+ 0 0 150 -3,-1.7 -1,-0.2 -5,-0.1 -2,-0.2 0.696 114.0 49.3 -87.9 -25.1 1.0 36.1 -19.7 51 150 A K H >< S+ 0 0 112 -4,-0.9 3,-1.9 -3,-0.3 4,-0.2 0.859 99.3 62.5 -88.2 -35.9 3.1 38.9 -21.4 52 151 A R G >< S+ 0 0 182 -4,-2.5 3,-1.0 1,-0.3 -1,-0.2 0.752 94.6 66.2 -57.6 -25.8 0.5 39.8 -24.1 53 152 A A G 3 S+ 0 0 62 1,-0.2 -1,-0.3 -5,-0.2 -2,-0.2 0.550 91.6 61.5 -75.4 -9.1 -1.9 40.8 -21.2 54 153 A E G < S- 0 0 143 -3,-1.9 2,-2.3 1,-0.1 -1,-0.2 0.416 90.9-149.5 -96.2 -2.6 0.5 43.8 -20.3 55 154 A E X - 0 0 126 -3,-1.0 3,-1.9 -4,-0.2 -1,-0.1 -0.381 13.9-170.6 68.7 -65.5 0.0 45.5 -23.7 56 155 A I T 3 - 0 0 106 -2,-2.3 -1,-0.2 1,-0.3 -4,-0.0 0.483 62.3 -88.9 59.6 5.0 3.6 47.1 -23.9 57 156 A N T > + 0 0 116 3,-0.1 3,-1.7 2,-0.1 4,-0.5 0.870 68.7 175.8 57.0 41.4 2.2 49.0 -27.0 58 157 A T G X + 0 0 66 -3,-1.9 3,-1.1 1,-0.3 4,-0.1 0.756 68.1 57.0 -47.8 -38.3 3.4 46.0 -29.1 59 158 A E G >> S+ 0 0 134 1,-0.2 4,-2.3 2,-0.2 3,-1.1 0.801 101.2 56.9 -69.8 -27.3 2.0 47.2 -32.5 60 159 A L G <4 S+ 0 0 128 -3,-1.7 -1,-0.2 1,-0.2 -2,-0.2 0.574 93.3 69.8 -79.8 -9.0 4.0 50.5 -32.2 61 160 A L G <4 S+ 0 0 127 -3,-1.1 -1,-0.2 -4,-0.5 -2,-0.2 0.450 116.6 22.5 -83.4 -3.0 7.2 48.5 -31.9 62 161 A E T <4 S+ 0 0 135 -3,-1.1 -2,-0.2 -4,-0.1 -3,-0.1 0.622 75.4 174.0-122.2 -58.0 6.7 47.5 -35.6 63 162 A H < - 0 0 124 -4,-2.3 2,-0.5 1,-0.2 -3,-0.1 0.900 24.3-150.2 42.8 62.0 4.4 50.2 -37.3 64 163 A H + 0 0 161 2,-0.1 2,-0.3 0, 0.0 -1,-0.2 -0.475 41.6 131.6 -64.2 109.7 4.6 48.9 -40.9 65 164 A H - 0 0 136 -2,-0.5 0, 0.0 2,-0.1 0, 0.0 -0.983 62.4-123.6-163.0 153.7 4.2 52.1 -43.1 66 165 A H + 0 0 169 -2,-0.3 -2,-0.1 2,-0.0 -1,-0.0 0.528 51.5 149.7 -82.5 -9.6 5.8 53.9 -46.1 67 166 A H 0 0 159 1,-0.1 -2,-0.1 0, 0.0 0, 0.0 -0.009 360.0 360.0 -43.5 101.1 6.5 57.3 -44.3 68 167 A H 0 0 225 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 -0.526 360.0 360.0 -82.3 360.0 9.7 58.8 -45.9