==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=4-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN FIBRIL 28-NOV-07 2RMV . COMPND 2 MOLECULE: MAJOR PRION PROTEIN; . SOURCE 2 SYNTHETIC: YES; . AUTHOR G.BERTHO,G.BOUVIER,G.HUI BON HOA,J.-P.GIRAULT . 26 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3132.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 7 26.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 3.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 3.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 3.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 3.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 3.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 2 7.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 142 A G 0 0 34 0, 0.0 6,-0.1 0, 0.0 5,-0.1 0.000 360.0 360.0 360.0 -38.6 13.5 0.6 2.6 2 143 A N + 0 0 174 1,-0.2 4,-0.1 4,-0.1 3,-0.0 0.608 360.0 65.7 -74.3 -11.4 16.3 -1.9 3.4 3 144 A D S S- 0 0 98 2,-0.3 -1,-0.2 0, 0.0 3,-0.1 0.991 131.8 -65.3 -67.6 -71.2 13.6 -4.6 3.1 4 145 A Y S S+ 0 0 205 1,-0.8 2,-0.2 0, 0.0 5,-0.0 0.183 105.9 1.7-142.8 -79.9 12.9 -4.1 -0.6 5 146 A E - 0 0 79 1,-0.1 -1,-0.8 3,-0.1 -2,-0.3 -0.474 43.0-179.6-104.6-178.5 11.4 -0.8 -1.5 6 147 A D S > S+ 0 0 110 -2,-0.2 4,-0.6 -3,-0.1 -1,-0.1 0.322 88.7 42.4-146.1 -41.3 10.6 2.3 0.5 7 148 A R T 4 S+ 0 0 196 1,-0.2 -2,-0.0 2,-0.2 0, 0.0 0.625 131.1 29.6 -85.8 -15.5 9.2 4.7 -2.0 8 149 A Y T 4 S+ 0 0 136 2,-0.1 4,-0.4 3,-0.0 3,-0.3 0.389 105.2 76.8-121.8 -5.5 7.2 1.9 -3.6 9 150 A Y T 4 S+ 0 0 100 1,-0.2 4,-0.2 2,-0.1 -2,-0.2 0.805 95.8 50.1 -73.5 -29.9 6.8 -0.2 -0.5 10 151 A R S X S+ 0 0 144 -4,-0.6 4,-1.9 3,-0.2 -1,-0.2 0.585 87.8 97.0 -83.9 -12.0 4.1 2.2 0.7 11 152 A E T 4 S- 0 0 57 -3,-0.3 -2,-0.1 1,-0.2 -1,-0.1 0.915 106.6 -5.1 -47.7 -81.8 2.2 2.1 -2.6 12 153 A N T 4 S+ 0 0 77 -4,-0.4 -1,-0.2 1,-0.2 3,-0.2 0.257 131.8 66.7-100.9 10.1 -0.6 -0.5 -2.2 13 154 A M T 4 S+ 0 0 127 1,-0.3 2,-0.4 -4,-0.2 -2,-0.2 0.678 105.0 38.6-104.8 -25.6 0.6 -1.4 1.2 14 155 A A S < S+ 0 0 67 -4,-1.9 -1,-0.3 -3,-0.1 2,-0.1 -0.803 84.7 147.8-126.2 87.9 -0.2 1.9 2.9 15 156 A R - 0 0 135 -2,-0.4 -3,-0.1 1,-0.2 7,-0.1 -0.061 50.8 -37.1-105.3-155.5 -3.4 3.1 1.5 16 157 A Y > - 0 0 133 1,-0.1 3,-2.0 -2,-0.1 -1,-0.2 -0.395 49.4-123.9 -73.5 145.5 -6.4 5.1 2.7 17 158 A P T 3 S+ 0 0 142 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.628 113.6 51.6 -63.3 -13.2 -7.7 4.7 6.3 18 159 A N T 3 S+ 0 0 103 3,-0.0 2,-1.0 2,-0.0 3,-0.1 0.419 81.9 105.4-104.0 -0.7 -11.1 3.8 4.8 19 160 A Q < - 0 0 47 -3,-2.0 6,-0.2 1,-0.2 -4,-0.1 -0.711 45.1-176.8 -83.6 103.1 -9.8 1.2 2.4 20 161 A V S S- 0 0 105 -2,-1.0 -1,-0.2 4,-0.6 2,-0.2 0.799 77.4 -0.4 -69.2 -27.6 -10.8 -2.1 3.9 21 162 A Y S S- 0 0 166 3,-1.8 -6,-0.1 -3,-0.1 -3,-0.0 -0.450 102.0 -70.9-133.3-149.4 -9.0 -3.8 1.1 22 163 A Y S S- 0 0 157 -2,-0.2 -1,-0.1 -7,-0.1 -3,-0.0 0.981 123.3 -6.0 -77.9 -64.7 -7.0 -2.6 -2.0 23 164 A R S S+ 0 0 224 -3,-0.1 -3,-0.1 -4,-0.0 -2,-0.0 0.841 111.1 99.5 -94.5 -49.8 -9.8 -1.3 -4.1 24 165 A P + 0 0 64 0, 0.0 -3,-1.8 0, 0.0 -4,-0.6 -0.158 31.0 148.0 -43.5 115.9 -12.9 -2.3 -1.9 25 166 A V 0 0 76 -6,-0.2 -2,-0.0 -5,-0.2 -3,-0.0 0.510 360.0 360.0-123.6 -23.1 -14.0 0.7 0.1 26 167 A C 0 0 176 -7,-0.0 0, 0.0 -6,-0.0 0, 0.0 0.631 360.0 360.0-122.2 360.0 -17.7 0.0 0.3