==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=4-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN FIBRIL 29-NOV-07 2RMW . COMPND 2 MOLECULE: MAJOR PRION PROTEIN; . SOURCE 2 SYNTHETIC: YES; . AUTHOR G.BERTHO,G.BOUVIER,G.HUI BON HOA,J.-P.GIRAULT . 26 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 2769.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 10 38.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 3 11.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 2 7.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 3.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 7.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 3.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 1 3.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 142 A G 0 0 129 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-145.9 -13.7 5.9 -7.2 2 143 A N - 0 0 65 5,-0.0 2,-0.4 6,-0.0 0, 0.0 -0.880 360.0-177.9-168.0 135.4 -12.1 2.8 -5.7 3 144 A D + 0 0 146 -2,-0.3 5,-0.2 1,-0.1 3,-0.0 -0.925 22.1 148.6-140.8 113.5 -13.1 0.0 -3.4 4 145 A Y - 0 0 138 3,-2.5 4,-0.2 -2,-0.4 5,-0.1 0.672 58.0 -58.6-111.6 -96.4 -10.5 -2.6 -2.4 5 146 A E S S+ 0 0 158 3,-0.9 4,-0.1 0, 0.0 3,-0.0 0.649 123.0 19.1-127.4 -75.5 -10.2 -4.5 0.8 6 147 A D S S- 0 0 109 2,-0.5 3,-0.1 -3,-0.0 -3,-0.0 0.881 136.7 -64.4 -69.4 -39.3 -9.8 -2.6 4.1 7 148 A R S S+ 0 0 125 1,-1.0 -3,-2.5 0, 0.0 2,-0.2 -0.168 113.1 3.2-170.0 -68.2 -11.2 0.4 2.2 8 149 A Y S > S- 0 0 76 -5,-0.2 2,-2.0 -4,-0.2 -1,-1.0 -0.363 109.4 -57.6-112.2-161.8 -8.8 1.4 -0.5 9 150 A Y G >> S+ 0 0 102 1,-0.2 4,-2.1 -2,-0.2 3,-1.0 -0.090 91.6 123.7 -74.5 42.5 -5.5 -0.2 -1.6 10 151 A R G 34 + 0 0 65 -2,-2.0 4,-0.4 1,-0.3 -1,-0.2 0.785 64.3 61.0 -76.5 -26.1 -4.2 0.3 1.9 11 152 A E G <4 S+ 0 0 123 -3,-0.7 -1,-0.3 2,-0.1 -2,-0.1 0.200 119.1 27.7 -85.8 17.5 -3.4 -3.4 2.2 12 153 A N T <4 S- 0 0 118 -3,-1.0 2,-0.2 5,-0.0 -2,-0.2 0.490 133.0 -22.1-136.8 -67.7 -1.0 -3.0 -0.7 13 154 A M S < S+ 0 0 64 -4,-2.1 5,-0.1 1,-0.0 -2,-0.1 -0.720 70.8 128.4-162.7 96.2 0.5 0.4 -1.2 14 155 A Y S S- 0 0 85 -4,-0.4 -4,-0.1 -2,-0.2 4,-0.1 0.657 90.2 -55.8-118.1 -41.2 -1.0 3.6 0.2 15 156 A A S S+ 0 0 61 -5,-0.2 3,-0.1 2,-0.1 -5,-0.0 0.142 128.5 45.1-166.6 -55.5 1.9 5.2 2.1 16 157 A Y S S+ 0 0 158 1,-0.2 2,-1.1 -6,-0.1 3,-0.2 0.991 105.3 55.1 -70.3 -64.2 3.3 2.9 4.7 17 158 A P + 0 0 23 0, 0.0 4,-0.2 0, 0.0 -1,-0.2 -0.605 52.0 159.7 -82.1 97.9 3.7 -0.5 2.9 18 159 A N S S- 0 0 83 3,-3.6 4,-0.2 -2,-1.1 3,-0.1 0.824 93.0 -25.5 -81.1 -37.0 5.7 0.2 -0.2 19 160 A Q S S- 0 0 126 2,-0.8 3,-0.1 -3,-0.2 4,-0.1 0.338 132.7 -33.7-133.9 -69.1 6.6 -3.5 -0.4 20 161 A V S S- 0 0 60 4,-0.3 5,-0.1 2,-0.1 3,-0.1 0.551 129.1 -37.6-112.7 -69.5 6.3 -4.8 3.1 21 162 A Y S S- 0 0 109 3,-1.1 -3,-3.6 -4,-0.2 -2,-0.8 0.533 101.4 -88.0-100.9 -75.3 7.4 -1.6 4.7 22 163 A Y S S- 0 0 145 2,-0.8 -2,-0.1 -4,-0.2 4,-0.0 0.034 100.6 -2.7-152.3 -72.0 10.0 -0.9 2.1 23 164 A R S S+ 0 0 190 -4,-0.1 2,-0.1 -3,-0.1 0, 0.0 0.892 122.4 65.6 -91.7 -51.0 13.5 -2.4 2.6 24 165 A P S S- 0 0 58 0, 0.0 -3,-1.1 0, 0.0 -2,-0.8 -0.413 87.6-119.9 -69.8 145.9 12.9 -4.1 6.0 25 166 A V 0 0 124 -5,-0.1 -2,-0.0 -4,-0.1 0, 0.0 -0.755 360.0 360.0 -90.1 130.0 10.4 -7.0 6.2 26 167 A C 0 0 129 -2,-0.5 -1,-0.0 -4,-0.0 0, 0.0 -0.705 360.0 360.0-147.8 360.0 7.4 -6.4 8.5