==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=11-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER METAL BINDING PROTEIN 01-DEC-03 1RO4 . COMPND 2 MOLECULE: TRANSCRIPTION INITIATION FACTOR IIB; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR M.GHOSH,M.IKURA . 58 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5901.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 19 32.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 5 8.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 15.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 1.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 1 1.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 2 A A 0 0 132 0, 0.0 3,-0.5 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 132.3 -14.3 12.7 -14.4 2 3 A S + 0 0 134 1,-0.2 0, 0.0 0, 0.0 0, 0.0 -0.161 360.0 95.7 -99.4 38.2 -10.5 12.5 -14.6 3 4 A T + 0 0 132 0, 0.0 -1,-0.2 0, 0.0 2,-0.2 0.760 61.2 87.8 -95.3 -31.9 -10.0 15.1 -11.9 4 5 A S S S- 0 0 89 -3,-0.5 0, 0.0 1,-0.1 0, 0.0 -0.461 73.9-137.9 -71.5 139.0 -9.5 12.7 -9.0 5 6 A R - 0 0 184 43,-0.2 -1,-0.1 -2,-0.2 42,-0.0 0.995 56.6 -78.1 -58.3 -71.1 -6.0 11.4 -8.4 6 7 A L + 0 0 116 42,-0.2 3,-0.1 0, 0.0 -2,-0.1 0.138 48.1 175.4-158.1 -71.8 -6.7 7.8 -7.7 7 8 A D + 0 0 94 1,-0.2 2,-0.3 0, 0.0 -2,-0.0 0.764 42.9 141.9 52.8 25.8 -8.1 6.9 -4.2 8 9 A A - 0 0 81 1,-0.0 -1,-0.2 0, 0.0 39,-0.1 -0.776 41.6-144.8-100.8 143.4 -8.3 3.3 -5.6 9 10 A L - 0 0 143 -2,-0.3 3,-0.1 1,-0.2 -1,-0.0 -0.616 24.2 -97.2-102.5 163.9 -7.6 0.2 -3.6 10 11 A P - 0 0 62 0, 0.0 2,-0.2 0, 0.0 -1,-0.2 0.119 58.2 -64.4 -65.6-173.6 -6.0 -3.1 -4.8 11 12 A R - 0 0 195 1,-0.1 2,-0.5 2,-0.0 0, 0.0 -0.563 65.4 -87.1 -79.3 139.2 -7.9 -6.3 -5.7 12 13 A V S S- 0 0 130 -2,-0.2 -1,-0.1 -3,-0.1 9,-0.0 -0.213 87.4 -53.9 -47.3 96.8 -9.9 -8.0 -3.0 13 14 A T S S- 0 0 41 -2,-0.5 8,-0.2 9,-0.1 6,-0.1 0.067 103.6 -25.1 55.5-173.1 -7.2 -10.2 -1.6 14 15 A C - 0 0 4 3,-1.4 6,-0.1 6,-1.4 -2,-0.0 -0.466 55.2-133.1 -70.3 137.0 -5.2 -12.5 -3.8 15 16 A P S S+ 0 0 113 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.732 112.2 26.9 -61.5 -21.0 -6.9 -13.7 -7.0 16 17 A N S S+ 0 0 138 1,-0.2 -2,-0.1 4,-0.1 -3,-0.0 0.486 124.8 51.8-116.8 -11.1 -5.8 -17.2 -6.1 17 18 A H + 0 0 42 3,-0.2 -3,-1.4 1,-0.1 5,-0.3 -0.761 54.1 173.5-131.1 87.3 -5.6 -16.8 -2.3 18 19 A P S S+ 0 0 91 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.848 88.8 45.8 -59.9 -34.7 -8.8 -15.4 -0.8 19 20 A D S S+ 0 0 151 1,-0.1 2,-1.3 -6,-0.1 -6,-0.1 0.761 94.5 86.6 -79.4 -26.8 -7.4 -15.9 2.7 20 21 A A - 0 0 5 -3,-0.1 2,-2.1 -6,-0.1 -6,-1.4 -0.642 67.7-159.9 -82.9 95.9 -4.0 -14.5 1.8 21 22 A I - 0 0 122 -2,-1.3 11,-0.1 -8,-0.2 -1,-0.1 -0.504 26.3-123.9 -76.9 72.6 -4.5 -10.8 2.4 22 23 A L - 0 0 28 -2,-2.1 11,-0.3 -5,-0.3 -9,-0.1 0.216 32.7-137.2 -19.7 108.7 -1.6 -9.5 0.2 23 24 A V B -A 32 0A 77 9,-3.3 9,-2.3 1,-0.1 2,-0.3 -0.273 20.3 -91.7 -77.0 165.8 0.4 -7.5 2.7 24 25 A E S S+ 0 0 156 7,-0.2 7,-0.2 1,-0.2 4,-0.2 -0.620 96.3 11.5 -83.0 137.1 1.8 -4.1 2.1 25 26 A D S > S- 0 0 91 -2,-0.3 3,-1.3 4,-0.2 2,-1.0 0.987 78.4-124.1 62.3 89.9 5.3 -3.9 0.8 26 27 A Y T 3 S- 0 0 104 4,-1.5 4,-0.2 1,-0.3 -1,-0.2 -0.431 88.6 -35.2 -61.6 98.6 6.7 -7.2 -0.3 27 28 A R T 3 S- 0 0 212 -2,-1.0 -1,-0.3 1,-0.2 -2,-0.1 0.878 138.4 -27.4 49.5 38.5 9.8 -7.4 1.9 28 29 A A S < S+ 0 0 85 -3,-1.3 -1,-0.2 2,-0.2 -2,-0.2 0.786 135.2 78.8 91.5 35.3 10.0 -3.6 1.4 29 30 A G S S- 0 0 25 1,-0.4 -4,-0.2 -5,-0.0 -2,-0.1 -0.053 87.8 -41.7-134.1-124.7 8.2 -3.6 -2.0 30 31 A D S S- 0 0 41 -5,-0.3 -4,-1.5 -4,-0.2 2,-0.6 0.203 89.3 -36.0 -95.0-144.3 4.7 -3.8 -3.3 31 32 A M E - B 0 40A 45 9,-2.9 9,-2.0 -6,-0.2 2,-0.5 -0.744 59.2-160.4 -89.5 118.5 1.8 -6.0 -2.1 32 33 A I E -AB 23 39A 30 -9,-2.3 -9,-3.3 -2,-0.6 7,-0.2 -0.883 13.1-148.0-105.0 123.5 2.9 -9.5 -1.1 33 34 A C > - 0 0 0 5,-1.6 4,-5.0 -2,-0.5 5,-0.3 -0.737 11.5-151.0 -87.8 96.5 0.5 -12.4 -0.9 34 35 A P T 4 S+ 0 0 81 0, 0.0 -1,-0.2 0, 0.0 -13,-0.0 0.615 93.9 52.2 -42.4 -14.9 2.0 -14.5 2.0 35 36 A E T 4 S+ 0 0 128 -18,-0.1 -2,-0.0 3,-0.1 -14,-0.0 0.934 133.7 5.1 -89.7 -63.8 0.6 -17.5 0.2 36 37 A C T 4 S- 0 0 68 -16,-0.1 -4,-0.0 2,-0.1 -1,-0.0 0.685 95.3-136.2 -90.5 -20.4 1.8 -17.3 -3.4 37 38 A G < + 0 0 28 -4,-5.0 2,-0.1 1,-0.2 -5,-0.0 0.805 38.7 172.4 68.4 33.8 3.9 -14.3 -2.3 38 39 A L - 0 0 55 -5,-0.3 -5,-1.6 1,-0.1 2,-0.6 -0.460 26.4-138.5 -74.3 143.9 2.9 -12.4 -5.4 39 40 A V E -B 32 0A 54 -7,-0.2 2,-0.4 -2,-0.1 -7,-0.2 -0.916 22.1-178.2-109.7 111.4 4.0 -8.7 -5.5 40 41 A V E +B 31 0A 54 -9,-2.0 -9,-2.9 -2,-0.6 2,-0.1 -0.910 40.8 46.3-111.3 134.8 1.4 -6.3 -6.9 41 42 A G - 0 0 35 -2,-0.4 2,-0.2 -11,-0.2 -11,-0.2 -0.408 46.7-154.1 122.8 160.2 2.1 -2.6 -7.3 42 43 A D - 0 0 134 -2,-0.1 -1,-0.1 1,-0.1 -13,-0.0 -0.652 69.3 -9.0-173.9 110.3 4.7 -0.2 -8.7 43 44 A R + 0 0 206 -2,-0.2 -1,-0.1 1,-0.1 -13,-0.0 0.957 58.4 168.5 60.9 92.4 5.4 3.4 -7.6 44 45 A V - 0 0 85 -3,-0.1 -1,-0.1 3,-0.0 -14,-0.0 0.698 16.8-166.2-103.5 -28.5 2.5 4.5 -5.3 45 46 A I - 0 0 129 1,-0.1 -2,-0.0 2,-0.0 0, 0.0 0.763 66.9 -70.8 44.0 29.5 4.0 7.7 -4.0 46 47 A D S S- 0 0 149 1,-0.0 2,-0.1 2,-0.0 -1,-0.1 0.913 70.5-166.4 54.1 101.5 1.3 7.6 -1.4 47 48 A V + 0 0 38 -39,-0.1 2,-1.1 1,-0.0 -2,-0.0 -0.353 49.7 54.5-105.2-172.7 -2.1 8.3 -3.0 48 49 A G - 0 0 22 1,-0.2 -43,-0.2 -2,-0.1 -42,-0.2 -0.739 55.0-175.2 93.0 -95.9 -5.5 9.1 -1.7 49 50 A S + 0 0 110 -2,-1.1 -1,-0.2 1,-0.1 3,-0.1 0.930 19.3 153.5 60.4 98.1 -5.2 12.1 0.6 50 51 A E - 0 0 149 1,-0.1 2,-2.2 2,-0.0 3,-0.2 0.141 44.2-136.5-139.5 16.8 -8.5 12.9 2.2 51 52 A W - 0 0 186 1,-0.2 -1,-0.1 0, 0.0 -2,-0.1 -0.365 24.1-170.7 61.9 -81.5 -7.4 14.6 5.5 52 53 A R + 0 0 227 -2,-2.2 2,-0.2 1,-0.2 -1,-0.2 0.992 35.2 123.9 57.1 70.8 -9.9 12.8 7.7 53 54 A T - 0 0 104 -3,-0.2 2,-0.5 0, 0.0 -1,-0.2 -0.736 61.4 -94.4-141.7-170.5 -9.4 14.8 10.9 54 55 A F S S- 0 0 169 1,-0.2 0, 0.0 -2,-0.2 0, 0.0 -0.970 82.4 -11.5-121.6 125.0 -11.3 16.8 13.5 55 56 A S S S- 0 0 114 -2,-0.5 2,-0.3 2,-0.0 -1,-0.2 0.554 70.4-129.8 63.5 139.7 -11.6 20.6 13.3 56 57 A N - 0 0 102 1,-0.1 -1,-0.0 -3,-0.1 0, 0.0 -0.770 18.3-168.6-119.4 165.1 -9.6 22.7 10.9 57 58 A D 0 0 164 -2,-0.3 -1,-0.1 1,-0.3 -2,-0.0 0.694 360.0 360.0-118.2 -45.4 -7.4 25.8 11.2 58 59 A K 0 0 217 0, 0.0 -1,-0.3 0, 0.0 0, 0.0 -0.933 360.0 360.0-132.1 360.0 -6.7 27.0 7.7