==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=4-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 28-MAR-08 2ROK . COMPND 2 MOLECULE: POLY(A)-SPECIFIC RIBONUCLEASE; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR T.NAGATA,S.SUZUKI,R.ENDO,M.SHIROUZU,T.TERADA,M.INOUE, . 100 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7827.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 50 50.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 16 16.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 13 13.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 19 19.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 423 A G >> 0 0 73 0, 0.0 3,-2.4 0, 0.0 4,-1.7 0.000 360.0 360.0 360.0-133.3 -12.0 -17.2 -10.6 2 424 A S T 34 + 0 0 141 1,-0.3 4,-0.1 2,-0.2 0, 0.0 0.639 360.0 83.2 -56.4 -16.8 -14.2 -19.8 -8.9 3 425 A S T 34 S- 0 0 122 2,-0.2 -1,-0.3 1,-0.1 0, 0.0 0.695 127.9 -69.3 -57.7 -24.1 -16.4 -19.5 -12.0 4 426 A G T <4 S+ 0 0 72 -3,-2.4 2,-0.3 1,-0.3 -2,-0.2 0.431 105.5 59.1 150.6 3.2 -14.0 -22.1 -13.6 5 427 A S < - 0 0 84 -4,-1.7 -1,-0.3 1,-0.1 -2,-0.2 -0.994 36.7-171.1-155.9 149.9 -10.5 -20.6 -14.3 6 428 A S - 0 0 115 -2,-0.3 -1,-0.1 -4,-0.1 -4,-0.1 0.319 64.8 -95.5-120.0 -0.3 -7.4 -18.9 -12.7 7 429 A G S S- 0 0 70 -6,-0.1 3,-0.0 2,-0.0 -2,-0.0 -0.107 84.6 -32.3 108.8 -29.5 -5.5 -17.9 -15.9 8 430 A G - 0 0 30 2,-0.2 -3,-0.0 1,-0.0 -2,-0.0 -0.927 66.2 -81.8 164.7 175.1 -3.1 -20.9 -16.1 9 431 A P S S+ 0 0 138 0, 0.0 -1,-0.0 0, 0.0 -2,-0.0 0.540 90.4 108.0 -77.3 -10.0 -1.1 -23.7 -14.3 10 432 A D - 0 0 87 1,-0.1 -2,-0.2 -3,-0.0 0, 0.0 -0.080 68.6-134.8 -65.4 169.4 1.8 -21.1 -13.6 11 433 A L + 0 0 174 3,-0.0 3,-0.1 0, 0.0 -1,-0.1 -0.060 48.1 143.9-123.8 25.4 2.8 -19.6 -10.2 12 434 A Q - 0 0 152 1,-0.1 0, 0.0 2,-0.0 0, 0.0 -0.214 59.7 -72.7 -60.5 158.4 3.3 -15.8 -11.1 13 435 A P - 0 0 123 0, 0.0 -1,-0.1 0, 0.0 3,-0.1 -0.054 31.8-161.8 -51.4 157.1 2.2 -13.0 -8.7 14 436 A K S S+ 0 0 169 -3,-0.1 3,-0.1 1,-0.1 -2,-0.0 0.012 77.5 69.3-131.3 20.0 -1.5 -12.1 -8.0 15 437 A R > + 0 0 106 3,-0.1 3,-2.0 1,-0.1 65,-0.5 0.074 52.3 118.8-130.4 16.3 -1.1 -8.6 -6.5 16 438 A D T 3 S+ 0 0 117 1,-0.3 46,-0.1 64,-0.1 -1,-0.1 0.704 80.7 52.1 -62.4 -19.0 0.1 -6.5 -9.5 17 439 A H T 3 S+ 0 0 61 45,-0.1 39,-2.4 -3,-0.1 2,-0.3 0.164 98.4 91.5 -97.0 12.4 -3.1 -4.3 -9.1 18 440 A V E < -A 55 0A 6 -3,-2.0 62,-2.2 37,-0.2 63,-0.3 -0.897 55.7-162.0-120.5 142.6 -2.4 -3.7 -5.4 19 441 A L E -AB 54 79A 0 35,-3.0 35,-2.2 -2,-0.3 2,-0.4 -0.741 13.4-139.3-113.3 163.5 -0.5 -0.9 -3.5 20 442 A H E -AB 53 78A 6 58,-2.9 58,-2.5 33,-0.3 2,-0.4 -0.969 23.0-163.4-123.0 138.7 1.1 -0.3 -0.1 21 443 A V E -AB 52 77A 0 31,-2.6 31,-1.8 -2,-0.4 2,-0.4 -0.977 7.7-161.6-133.0 137.7 0.6 3.1 1.5 22 444 A T E +AB 51 76A 63 54,-2.5 54,-2.0 -2,-0.4 29,-0.2 -0.969 23.5 149.0-127.4 135.5 2.5 4.8 4.4 23 445 A F - 0 0 9 27,-2.5 52,-0.2 -2,-0.4 -2,-0.0 -0.974 49.1 -70.8-158.1 158.6 1.1 7.8 6.5 24 446 A P > - 0 0 66 0, 0.0 3,-2.2 0, 0.0 50,-0.0 -0.280 52.5-108.0 -53.4 148.1 1.1 9.6 9.9 25 447 A K T 3 S+ 0 0 163 1,-0.3 26,-0.1 25,-0.0 25,-0.0 0.594 115.1 67.0 -58.9 -16.2 -0.8 7.7 12.7 26 448 A E T 3 S+ 0 0 158 24,-0.1 -1,-0.3 2,-0.1 24,-0.1 0.591 76.5 108.2 -82.4 -14.7 -3.7 10.3 12.6 27 449 A W < - 0 0 50 -3,-2.2 2,-0.2 22,-0.1 -4,-0.1 -0.340 52.9-163.0 -62.6 148.7 -4.7 9.3 9.0 28 450 A K > - 0 0 125 1,-0.0 4,-1.8 -2,-0.0 3,-0.5 -0.810 37.7 -96.2-129.7 165.9 -8.1 7.4 8.7 29 451 A T H > S+ 0 0 59 -2,-0.2 4,-2.7 1,-0.2 5,-0.2 0.839 124.5 57.1 -50.5 -36.1 -10.0 5.2 6.1 30 452 A S H > S+ 0 0 91 2,-0.2 4,-2.2 1,-0.2 -1,-0.2 0.898 104.6 48.8 -65.9 -41.5 -11.8 8.4 5.1 31 453 A D H > S+ 0 0 64 -3,-0.5 4,-2.0 2,-0.2 -2,-0.2 0.838 112.2 51.5 -64.8 -31.6 -8.5 10.2 4.2 32 454 A L H X S+ 0 0 0 -4,-1.8 4,-2.3 2,-0.2 -2,-0.2 0.940 109.2 47.4 -72.6 -46.3 -7.6 7.0 2.2 33 455 A Y H X S+ 0 0 110 -4,-2.7 4,-0.5 1,-0.2 -2,-0.2 0.889 114.2 49.6 -58.6 -38.3 -10.9 7.0 0.3 34 456 A Q H < S+ 0 0 144 -4,-2.2 3,-0.4 2,-0.2 4,-0.2 0.886 111.2 48.6 -67.2 -39.7 -10.3 10.8 -0.4 35 457 A L H >< S+ 0 0 36 -4,-2.0 3,-0.5 1,-0.2 -2,-0.2 0.910 118.3 38.8 -65.5 -44.2 -6.6 10.1 -1.6 36 458 A F H >< S+ 0 0 1 -4,-2.3 3,-2.1 1,-0.2 -1,-0.2 0.358 82.1 105.0 -95.4 6.9 -7.6 7.3 -4.0 37 459 A S G >< + 0 0 77 -4,-0.5 3,-1.3 -3,-0.4 -1,-0.2 0.767 67.8 74.0 -55.2 -26.7 -10.9 8.9 -5.2 38 460 A A G < S+ 0 0 86 -3,-0.5 -1,-0.3 1,-0.2 -2,-0.1 0.555 99.1 45.1 -61.1 -10.6 -9.0 9.7 -8.5 39 461 A F G < S- 0 0 35 -3,-2.1 18,-0.3 1,-0.4 -1,-0.2 0.239 105.1-128.3-122.7 8.0 -9.3 5.9 -9.4 40 462 A G S < S+ 0 0 53 -3,-1.3 -1,-0.4 -4,-0.1 2,-0.1 -0.536 70.8 15.1 80.8-145.8 -13.0 5.2 -8.5 41 463 A N S S+ 0 0 139 -2,-0.2 16,-0.3 1,-0.0 2,-0.2 -0.385 73.9 167.2 -63.3 144.0 -14.1 2.3 -6.3 42 464 A I - 0 0 5 14,-0.1 2,-0.3 -2,-0.1 14,-0.2 -0.836 29.4-129.3-145.0 175.7 -11.3 0.6 -4.1 43 465 A Q E -C 55 0A 122 12,-1.2 12,-2.5 -2,-0.2 2,-0.4 -0.979 18.0-154.5-136.2 150.4 -10.6 -1.8 -1.2 44 466 A I E -C 54 0A 31 -2,-0.3 2,-0.4 10,-0.2 10,-0.2 -0.984 9.5-175.1-133.6 133.5 -8.4 -1.2 1.9 45 467 A S E -C 53 0A 76 8,-2.6 8,-2.9 -2,-0.4 -2,-0.0 -0.904 19.0-143.4-136.1 100.5 -6.5 -3.7 4.2 46 468 A W E +C 52 0A 115 -2,-0.4 6,-0.2 6,-0.3 3,-0.1 -0.238 26.9 167.2 -59.8 151.1 -4.7 -2.4 7.3 47 469 A I - 0 0 69 4,-1.8 2,-0.2 1,-0.4 5,-0.2 0.460 68.4 -1.1-135.1 -20.1 -1.4 -3.8 8.6 48 470 A D S S- 0 0 96 3,-2.0 -1,-0.4 1,-0.0 3,-0.2 -0.912 77.4 -91.3-152.4-179.1 -0.3 -1.2 11.1 49 471 A D S S+ 0 0 122 -2,-0.2 -22,-0.1 1,-0.2 3,-0.1 0.736 127.6 32.5 -64.3 -25.7 -1.2 2.2 12.8 50 472 A T S S+ 0 0 56 1,-0.1 -27,-2.5 -24,-0.1 2,-0.3 0.265 119.5 43.1-125.3 4.1 0.9 4.0 10.0 51 473 A S E +A 22 0A 12 -29,-0.2 -3,-2.0 -3,-0.2 -4,-1.8 -0.996 49.7 166.2-154.6 156.2 0.5 1.7 6.9 52 474 A A E -AC 21 46A 0 -31,-1.8 -31,-2.6 -2,-0.3 2,-0.3 -0.975 33.7-109.5-153.8 160.2 -2.1 -0.3 4.8 53 475 A F E -AC 20 45A 33 -8,-2.9 -8,-2.6 -2,-0.3 2,-0.4 -0.734 29.0-162.2 -90.9 151.0 -2.6 -2.1 1.5 54 476 A V E -AC 19 44A 0 -35,-2.2 -35,-3.0 -2,-0.3 2,-0.4 -0.994 6.8-146.0-138.7 126.6 -5.0 -0.6 -1.2 55 477 A S E -AC 18 43A 36 -12,-2.5 -12,-1.2 -2,-0.4 2,-0.3 -0.776 13.9-170.0 -95.3 137.4 -6.5 -2.5 -4.2 56 478 A L - 0 0 5 -39,-2.4 -14,-0.1 -2,-0.4 -16,-0.1 -0.828 31.1-119.2-122.5 158.8 -7.2 -0.7 -7.6 57 479 A S S S+ 0 0 91 -18,-0.3 -39,-0.1 -16,-0.3 -15,-0.1 0.611 93.1 27.6 -80.7 -9.9 -9.2 -2.0 -10.6 58 480 A Q > - 0 0 97 -41,-0.2 4,-1.3 1,-0.1 3,-0.2 -0.995 68.6-128.9-145.7 151.1 -6.2 -1.8 -13.1 59 481 A P H > S+ 0 0 71 0, 0.0 4,-2.2 0, 0.0 5,-0.1 0.726 110.3 64.5 -71.6 -19.5 -2.3 -2.0 -13.0 60 482 A E H > S+ 0 0 126 2,-0.2 4,-2.3 1,-0.2 5,-0.1 0.915 100.7 50.0 -65.1 -40.3 -2.3 1.3 -15.1 61 483 A Q H > S+ 0 0 21 -3,-0.2 4,-2.5 2,-0.2 -1,-0.2 0.899 109.2 52.6 -64.9 -39.0 -3.9 3.0 -12.0 62 484 A V H X S+ 0 0 7 -4,-1.3 4,-2.5 2,-0.2 5,-0.2 0.946 109.3 48.6 -56.8 -50.7 -1.2 1.4 -9.8 63 485 A Q H X S+ 0 0 147 -4,-2.2 4,-1.9 1,-0.2 -2,-0.2 0.900 111.9 49.2 -60.5 -41.7 1.5 2.9 -12.1 64 486 A I H X S+ 0 0 78 -4,-2.3 4,-2.7 2,-0.2 -2,-0.2 0.935 112.1 47.8 -62.6 -47.1 -0.1 6.4 -12.0 65 487 A A H X S+ 0 0 0 -4,-2.5 4,-1.8 1,-0.2 -2,-0.2 0.899 112.2 49.5 -62.6 -40.7 -0.4 6.3 -8.2 66 488 A V H < S+ 0 0 39 -4,-2.5 4,-0.4 2,-0.2 -1,-0.2 0.845 114.4 46.1 -67.0 -34.0 3.3 5.2 -7.9 67 489 A N H >< S+ 0 0 80 -4,-1.9 3,-0.9 -5,-0.2 -2,-0.2 0.928 114.8 45.9 -70.3 -46.4 4.4 8.0 -10.3 68 490 A T H >< S+ 0 0 63 -4,-2.7 3,-1.5 1,-0.2 -2,-0.2 0.765 97.6 71.0 -73.8 -25.2 2.3 10.7 -8.5 69 491 A S G >< S+ 0 0 4 -4,-1.8 3,-1.6 1,-0.3 -1,-0.2 0.719 78.8 78.8 -66.4 -19.7 3.4 9.8 -4.9 70 492 A K G < S+ 0 0 128 -3,-0.9 -1,-0.3 -4,-0.4 -2,-0.1 0.709 95.4 48.5 -57.4 -22.4 6.9 11.2 -5.7 71 493 A Y G < S+ 0 0 178 -3,-1.5 -1,-0.3 -4,-0.1 2,-0.2 0.437 89.4 108.9 -98.5 -5.6 5.3 14.7 -5.1 72 494 A A < + 0 0 11 -3,-1.6 5,-0.0 -4,-0.2 -3,-0.0 -0.497 37.1 176.3 -77.2 145.5 3.6 13.8 -1.8 73 495 A E S S+ 0 0 189 -2,-0.2 -1,-0.1 3,-0.0 3,-0.1 0.358 80.7 44.8-129.8 0.5 4.8 15.2 1.6 74 496 A S S S+ 0 0 69 1,-0.2 2,-0.3 -50,-0.0 -2,-0.0 0.296 124.0 11.2-126.6 0.9 2.1 13.9 4.1 75 497 A Y - 0 0 64 -52,-0.2 2,-0.3 -6,-0.1 -52,-0.2 -0.947 63.2-146.0-161.2 171.6 2.0 10.2 2.7 76 498 A R E -B 22 0A 126 -54,-2.0 -54,-2.5 -2,-0.3 2,-0.3 -0.982 7.9-156.4-148.6 155.1 3.8 7.8 0.3 77 499 A I E +B 21 0A 13 -2,-0.3 2,-0.3 -56,-0.2 -56,-0.2 -0.980 16.0 161.4-134.7 141.6 2.8 5.0 -2.1 78 500 A Q E -B 20 0A 31 -58,-2.5 -58,-2.9 -2,-0.3 2,-0.1 -0.922 41.5 -87.9-146.0 168.7 4.5 1.9 -3.6 79 501 A T E > -B 19 0A 35 -2,-0.3 4,-2.0 -60,-0.3 -60,-0.3 -0.350 35.9-112.5 -71.6 163.0 3.4 -1.5 -5.2 80 502 A Y H > S+ 0 0 80 -62,-2.2 4,-2.3 -65,-0.5 5,-0.2 0.907 121.5 54.4 -57.2 -40.8 2.7 -4.7 -3.2 81 503 A A H > S+ 0 0 73 -63,-0.3 4,-2.4 2,-0.2 -1,-0.2 0.869 105.6 51.6 -65.2 -36.7 5.9 -6.1 -4.9 82 504 A E H > S+ 0 0 68 2,-0.2 4,-0.7 1,-0.2 -1,-0.2 0.916 108.7 51.1 -64.4 -42.3 8.0 -3.1 -3.7 83 505 A Y H >< S+ 0 0 45 -4,-2.0 3,-1.0 2,-0.2 -2,-0.2 0.944 112.8 45.9 -59.2 -46.5 6.7 -3.7 -0.1 84 506 A V H >< S+ 0 0 70 -4,-2.3 3,-1.3 1,-0.2 -2,-0.2 0.912 110.8 52.9 -58.8 -44.8 7.7 -7.5 -0.4 85 507 A G H 3< S+ 0 0 48 -4,-2.4 -1,-0.2 1,-0.2 -2,-0.2 0.559 113.9 43.3 -70.9 -9.1 11.1 -6.5 -1.9 86 508 A K T << S+ 0 0 97 -3,-1.0 -1,-0.2 -4,-0.7 -2,-0.2 0.188 74.4 118.0-117.7 8.5 11.8 -4.1 1.1 87 509 A K < + 0 0 151 -3,-1.3 2,-1.9 1,-0.3 3,-0.2 0.736 59.9 78.4 -53.6 -27.8 10.5 -6.5 3.9 88 510 A Q + 0 0 150 1,-0.2 -1,-0.3 -4,-0.2 -4,-0.0 -0.287 66.2 164.0 -70.6 47.4 14.1 -6.5 5.3 89 511 A K - 0 0 130 -2,-1.9 -1,-0.2 1,-0.1 -2,-0.1 0.716 25.4-162.2 -49.0 -38.4 13.1 -3.0 6.8 90 512 A G + 0 0 54 -3,-0.2 -1,-0.1 1,-0.1 -2,-0.1 0.859 16.6 176.7 53.8 41.3 16.0 -2.7 9.4 91 513 A K + 0 0 147 9,-0.1 2,-0.3 2,-0.0 -1,-0.1 0.754 58.4 17.1 -49.7 -40.3 13.9 -0.0 11.3 92 514 A Q - 0 0 92 8,-0.3 7,-0.1 1,-0.1 8,-0.1 -0.948 49.5-168.2-140.1 157.5 16.4 0.5 14.2 93 515 A V + 0 0 138 -2,-0.3 -1,-0.1 3,-0.1 -2,-0.0 0.324 60.8 103.7-131.8 1.5 20.1 -0.3 15.0 94 516 A K S S- 0 0 187 2,-0.1 -1,-0.1 1,-0.1 6,-0.0 0.853 123.4 -28.1 -56.9 -35.5 20.5 0.3 18.8 95 517 A S S S- 0 0 107 1,-0.1 -1,-0.1 5,-0.1 -2,-0.1 0.328 114.4 -77.2-145.0 -39.6 20.5 -3.5 19.2 96 518 A G > - 0 0 14 1,-0.1 3,-1.9 4,-0.0 4,-0.2 -0.831 47.7 -71.4 156.0 175.9 18.3 -4.6 16.1 97 519 A P G > S+ 0 0 86 0, 0.0 3,-0.7 0, 0.0 -1,-0.1 0.737 124.0 68.0 -65.8 -20.3 14.7 -4.9 14.7 98 520 A S G 3 S+ 0 0 125 1,-0.2 0, 0.0 -3,-0.1 0, 0.0 0.532 108.5 37.5 -66.9 -8.9 14.2 -7.8 17.3 99 521 A S G < 0 0 91 -3,-1.9 -1,-0.2 1,-0.3 -6,-0.1 0.205 360.0 360.0-132.6 8.6 14.5 -5.0 20.0 100 522 A G < 0 0 53 -3,-0.7 -1,-0.3 -4,-0.2 -8,-0.3 -0.709 360.0 360.0-171.7 360.0 12.6 -2.0 18.5