==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=23-JUL-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER CELL CYCLE 14-OCT-09 2RQQ . COMPND 2 MOLECULE: DNA REPLICATION FACTOR CDT1; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR J.G.JEE,T.MIZUNO,K.KAMADA,H.TOCHIO,H.HIROAKI,F.HANAOKA,M.SHI . 113 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7994.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 83 73.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 9 8.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 5.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 15 13.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 51 45.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 1.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 445 A G 0 0 122 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 169.4 -0.6 -11.3 -10.7 2 446 A P - 0 0 51 0, 0.0 3,-0.1 0, 0.0 4,-0.1 -0.117 360.0 -79.9 -69.8 172.8 2.3 -10.0 -13.0 3 447 A L - 0 0 145 1,-0.1 3,-0.4 2,-0.1 0, 0.0 -0.153 60.3 -77.9 -61.8 164.1 5.5 -11.8 -14.1 4 448 A G S S+ 0 0 70 1,-0.2 3,-0.2 2,-0.1 -1,-0.1 -0.226 114.2 26.3 -62.0 158.6 8.6 -12.1 -11.8 5 449 A S S S- 0 0 121 1,-0.2 -1,-0.2 -3,-0.1 -2,-0.1 0.898 93.9-145.7 48.5 47.4 11.0 -9.1 -11.3 6 450 A M + 0 0 135 -3,-0.4 2,-0.3 -4,-0.1 -1,-0.2 -0.118 34.8 147.3 -48.9 124.1 8.1 -6.6 -12.1 7 451 A T + 0 0 93 -3,-0.2 -1,-0.0 1,-0.0 -3,-0.0 -0.982 53.9 2.0-160.1 150.3 9.1 -3.4 -14.0 8 452 A R S S+ 0 0 238 -2,-0.3 -2,-0.0 1,-0.2 -1,-0.0 0.723 79.2 159.9 44.9 35.4 7.8 -0.8 -16.6 9 453 A C > - 0 0 40 1,-0.1 3,-1.3 4,-0.0 4,-0.3 -0.675 48.7-135.0 -88.3 141.4 4.3 -2.6 -16.9 10 454 A P T 3> S+ 0 0 96 0, 0.0 4,-0.5 0, 0.0 -1,-0.1 0.324 100.1 71.8 -75.4 6.4 1.1 -0.9 -18.3 11 455 A E H 3> S+ 0 0 86 2,-0.2 4,-1.1 1,-0.1 -3,-0.0 0.629 75.4 78.3 -88.9 -20.0 -0.9 -2.4 -15.4 12 456 A Q H <> S+ 0 0 108 -3,-1.3 4,-0.7 1,-0.2 -1,-0.1 0.795 99.8 43.8 -58.8 -29.9 0.7 -0.0 -12.8 13 457 A E H > S+ 0 0 73 -4,-0.3 4,-3.2 2,-0.2 3,-0.5 0.903 102.7 63.7 -77.6 -44.1 -1.7 2.6 -14.1 14 458 A L H X S+ 0 0 97 -4,-0.5 4,-0.9 1,-0.2 -2,-0.2 0.697 102.2 53.2 -59.0 -20.3 -4.8 0.3 -14.2 15 459 A R H X S+ 0 0 105 -4,-1.1 4,-1.1 2,-0.1 -1,-0.2 0.914 116.8 34.9 -77.0 -46.2 -4.6 -0.0 -10.4 16 460 A L H X S+ 0 0 47 -4,-0.7 4,-1.9 -3,-0.5 5,-0.3 0.808 109.9 63.4 -83.2 -29.5 -4.5 3.8 -9.7 17 461 A Q H >X S+ 0 0 64 -4,-3.2 4,-2.7 2,-0.2 3,-0.6 0.972 105.2 47.8 -57.6 -49.9 -6.9 4.7 -12.6 18 462 A R H 3X S+ 0 0 74 -4,-0.9 4,-2.7 -5,-0.2 -1,-0.2 0.919 110.4 53.4 -53.0 -44.9 -9.6 2.7 -10.8 19 463 A L H 3< S+ 0 0 25 -4,-1.1 -1,-0.2 1,-0.2 -2,-0.2 0.780 115.6 37.5 -63.1 -34.8 -8.7 4.5 -7.5 20 464 A E H S+ 0 0 36 0, 0.0 4,-0.9 0, 0.0 -1,-0.2 0.877 121.4 49.5 -74.5 -39.9 -14.2 8.8 -6.1 24 468 A E H >X S+ 0 0 48 -4,-1.8 4,-1.7 2,-0.2 3,-1.3 0.980 111.7 47.8 -59.2 -57.4 -14.3 11.2 -9.2 25 469 A L H 3X S+ 0 0 4 -4,-3.2 4,-2.7 1,-0.3 5,-0.2 0.842 102.8 65.7 -55.7 -32.4 -17.2 9.3 -10.8 26 470 A A H 3X S+ 0 0 0 -4,-1.2 4,-0.7 -5,-0.4 -1,-0.3 0.852 107.2 39.7 -60.0 -34.8 -19.0 9.3 -7.4 27 471 A R H S+ 0 0 38 -4,-2.3 5,-1.2 1,-0.2 4,-1.1 0.950 116.9 38.2 -56.4 -54.9 -28.6 12.0 -12.8 34 478 A V H <5S+ 0 0 59 -4,-1.5 -2,-0.2 2,-0.2 -1,-0.2 0.785 105.9 65.9 -76.0 -28.3 -29.8 15.7 -12.5 35 479 A S H <5S+ 0 0 46 -4,-2.3 -1,-0.2 1,-0.2 -2,-0.2 0.861 113.5 34.4 -59.1 -36.2 -28.5 16.8 -16.0 36 480 A E H <5S- 0 0 64 -4,-1.1 -2,-0.2 -3,-0.4 -1,-0.2 0.680 101.7-139.7 -90.8 -20.8 -31.1 14.4 -17.5 37 481 A R T <5 + 0 0 224 -4,-1.1 -3,-0.2 1,-0.2 -4,-0.1 0.856 57.2 126.5 63.9 39.5 -33.7 15.1 -14.7 38 482 A K < - 0 0 87 -5,-1.2 -1,-0.2 1,-0.1 -2,-0.1 -0.971 65.8-134.2-132.4 145.3 -34.8 11.4 -14.6 39 483 A P S S+ 0 0 100 0, 0.0 2,-0.3 0, 0.0 52,-0.2 0.668 98.5 25.8 -72.3 -19.1 -35.1 8.8 -11.7 40 484 A A S S- 0 0 32 50,-0.1 2,-0.4 -7,-0.1 50,-0.2 -0.988 73.6-152.8-141.8 142.5 -33.4 6.1 -13.9 41 485 A L E -A 89 0A 5 48,-2.0 48,-2.4 -2,-0.3 2,-0.1 -0.957 13.3-133.6-120.1 132.1 -30.9 6.6 -16.8 42 486 A T E >> -A 88 0A 14 -2,-0.4 4,-2.6 46,-0.2 3,-0.5 -0.447 32.0-105.3 -75.9 157.1 -30.3 4.1 -19.7 43 487 A M H 3> S+ 0 0 80 44,-2.3 4,-2.1 1,-0.2 -1,-0.1 0.771 122.2 60.0 -46.7 -28.9 -26.8 3.1 -20.9 44 488 A E H 3> S+ 0 0 149 43,-0.2 4,-0.7 2,-0.2 -1,-0.2 0.929 109.6 39.0 -71.9 -45.4 -27.5 5.5 -23.9 45 489 A V H X> S+ 0 0 25 -3,-0.5 4,-3.0 2,-0.2 3,-1.2 0.956 117.0 50.4 -63.9 -51.9 -27.9 8.6 -21.7 46 490 A V H 3X S+ 0 0 5 -4,-2.6 4,-2.5 1,-0.3 5,-0.3 0.915 104.5 57.7 -60.7 -41.4 -25.1 7.6 -19.3 47 491 A C H 3< S+ 0 0 51 -4,-2.1 -1,-0.3 -5,-0.2 -2,-0.2 0.725 117.6 34.7 -60.3 -25.1 -22.6 7.0 -22.2 48 492 A A H XX S+ 0 0 49 -3,-1.2 4,-2.3 -4,-0.7 3,-0.8 0.872 121.8 43.4 -86.0 -54.0 -23.2 10.6 -23.3 49 493 A R H 3X>S+ 0 0 83 -4,-3.0 4,-2.6 1,-0.3 5,-1.1 0.898 106.3 58.1 -70.0 -42.5 -23.6 12.4 -19.9 50 494 A M H 3<5S+ 0 0 1 -4,-2.5 8,-0.4 -5,-0.3 -1,-0.3 0.730 115.4 41.5 -58.3 -21.0 -20.8 10.6 -18.0 51 495 A V H <45S+ 0 0 46 -3,-0.8 -2,-0.2 -5,-0.3 -1,-0.2 0.871 127.8 27.9 -85.9 -49.3 -18.5 12.1 -20.8 52 496 A D H <5S+ 0 0 128 -4,-2.3 -3,-0.2 1,-0.1 -2,-0.2 0.851 123.0 46.3 -90.1 -40.2 -20.0 15.6 -21.1 53 497 A S T <5S+ 0 0 39 -4,-2.6 -3,-0.2 -5,-0.2 2,-0.1 0.881 102.5 77.4 -69.6 -40.0 -21.4 16.3 -17.6 54 498 A C S - 0 0 80 -2,-0.2 4,-1.9 1,-0.1 3,-0.5 -0.514 23.5-125.1 -72.8 145.8 -13.6 6.5 -23.0 60 504 A P H > S+ 0 0 87 0, 0.0 4,-1.1 0, 0.0 -1,-0.1 0.689 105.3 65.2 -69.1 -18.8 -16.7 4.1 -23.5 61 505 A G H > S+ 0 0 56 2,-0.2 4,-0.6 1,-0.2 -3,-0.0 0.920 112.9 31.1 -68.8 -43.9 -14.5 0.9 -23.1 62 506 A E H > S+ 0 0 93 -3,-0.5 4,-1.8 2,-0.1 5,-0.2 0.792 107.8 74.2 -81.3 -31.0 -13.7 1.7 -19.4 63 507 A M H X S+ 0 0 11 -4,-1.9 4,-2.6 1,-0.2 3,-0.5 0.908 96.0 47.4 -46.0 -56.3 -17.0 3.5 -18.8 64 508 A E H X S+ 0 0 100 -4,-1.1 4,-2.0 1,-0.2 5,-0.2 0.904 111.7 50.9 -56.0 -46.4 -19.1 0.2 -18.8 65 509 A K H X S+ 0 0 137 -4,-0.6 4,-1.2 1,-0.2 -1,-0.2 0.765 113.3 45.2 -65.2 -31.2 -16.6 -1.5 -16.4 66 510 A H H X S+ 0 0 13 -4,-1.8 4,-1.8 -3,-0.5 -2,-0.2 0.902 109.8 53.0 -80.1 -43.1 -16.7 1.5 -13.9 67 511 A L H X S+ 0 0 16 -4,-2.6 4,-0.9 1,-0.2 -2,-0.2 0.921 116.0 41.0 -56.6 -45.6 -20.6 1.9 -13.9 68 512 A V H X S+ 0 0 51 -4,-2.0 4,-1.9 -5,-0.2 -1,-0.2 0.886 107.5 62.4 -69.8 -39.0 -21.0 -1.8 -13.1 69 513 A L H X S+ 0 0 33 -4,-1.2 4,-1.5 -5,-0.2 -2,-0.2 0.838 96.3 59.5 -63.3 -31.5 -18.0 -1.8 -10.5 70 514 A L H >X S+ 0 0 3 -4,-1.8 4,-2.4 2,-0.2 3,-1.1 0.989 109.0 43.0 -55.4 -58.4 -19.9 0.8 -8.3 71 515 A A H 3< S+ 0 0 18 -4,-0.9 -2,-0.2 1,-0.3 -1,-0.2 0.827 110.4 58.1 -57.8 -32.7 -22.9 -1.7 -7.9 72 516 A E H 3< S+ 0 0 140 -4,-1.9 -1,-0.3 2,-0.2 -2,-0.2 0.800 111.4 41.3 -65.3 -29.4 -20.3 -4.6 -7.4 73 517 A L H << S+ 0 0 47 -4,-1.5 -2,-0.2 -3,-1.1 -1,-0.2 0.830 139.9 2.0 -87.2 -35.6 -18.8 -2.6 -4.4 74 518 A L >X - 0 0 14 -4,-2.4 4,-1.2 -5,-0.2 3,-0.6 -0.742 51.8-173.3-152.9 104.6 -22.2 -1.6 -3.0 75 519 A P T 34 S+ 0 0 100 0, 0.0 -4,-0.1 0, 0.0 -3,-0.1 0.285 84.4 73.2 -72.0 11.4 -25.6 -2.6 -4.5 76 520 A D T 34 S+ 0 0 131 -5,-0.1 3,-0.1 3,-0.0 -5,-0.1 0.802 104.3 27.0-102.3 -37.7 -27.1 -0.1 -1.9 77 521 A W T <4 S+ 0 0 10 -3,-0.6 15,-0.8 1,-0.3 2,-0.4 0.866 132.2 30.2 -86.8 -45.1 -26.2 3.3 -3.3 78 522 A L E < -B 91 0A 0 -4,-1.2 2,-0.4 13,-0.2 -1,-0.3 -0.964 66.9-176.2-122.8 130.8 -26.0 2.3 -7.0 79 523 A S E -B 90 0A 51 11,-2.3 11,-2.0 -2,-0.4 2,-0.6 -0.989 20.2-143.4-129.8 125.7 -28.0 -0.5 -8.7 80 524 A L E -B 89 0A 66 -2,-0.4 2,-0.5 9,-0.2 9,-0.2 -0.781 24.9-169.9 -82.7 118.3 -27.8 -1.8 -12.3 81 525 A H E -B 88 0A 113 7,-3.0 7,-2.9 -2,-0.6 2,-0.5 -0.944 11.6-147.9-120.2 113.7 -31.4 -2.6 -13.4 82 526 A R E -B 87 0A 182 -2,-0.5 5,-0.2 5,-0.2 2,-0.0 -0.668 14.4-165.0 -82.0 124.4 -32.1 -4.5 -16.7 83 527 A I - 0 0 78 3,-2.1 -1,-0.1 -2,-0.5 0, 0.0 -0.050 52.9 -60.6 -84.6-164.8 -35.4 -3.6 -18.5 84 528 A R S S- 0 0 255 1,-0.1 3,-0.1 -2,-0.0 -2,-0.1 0.841 124.1 -22.7 -45.8 -43.0 -37.0 -5.7 -21.4 85 529 A T S S+ 0 0 124 1,-0.0 2,-0.1 0, 0.0 -1,-0.1 0.431 128.1 67.5-150.3 -22.6 -33.9 -5.2 -23.7 86 530 A D S S- 0 0 68 -5,-0.0 -3,-2.1 -43,-0.0 2,-0.4 -0.440 73.4-124.1 -92.2 173.2 -32.0 -2.1 -22.4 87 531 A T E - B 0 82A 24 -5,-0.2 -44,-2.3 -2,-0.1 2,-0.3 -0.992 23.0-171.6-121.6 125.5 -30.2 -1.5 -19.1 88 532 A Y E -AB 42 81A 64 -7,-2.9 -7,-3.0 -2,-0.4 2,-0.3 -0.802 9.7-147.6-105.2 154.1 -31.0 1.4 -16.7 89 533 A V E -AB 41 80A 13 -48,-2.4 -48,-2.0 -2,-0.3 2,-0.4 -0.935 5.4-159.0-117.3 148.4 -29.0 2.5 -13.6 90 534 A K E + B 0 79A 129 -11,-2.0 -11,-2.3 -2,-0.3 2,-0.3 -0.997 16.4 165.5-129.1 126.9 -30.3 4.1 -10.4 91 535 A L E - B 0 78A 11 -2,-0.4 2,-0.8 -52,-0.2 -13,-0.2 -0.960 39.2-111.7-131.4 152.4 -28.3 6.2 -7.8 92 536 A D > - 0 0 93 -15,-0.8 3,-1.0 -2,-0.3 -62,-0.1 -0.773 23.0-174.9 -85.3 108.5 -29.2 8.5 -4.9 93 537 A K T 3 S+ 0 0 92 -2,-0.8 -1,-0.1 1,-0.2 4,-0.1 0.646 82.7 65.3 -67.4 -18.4 -28.3 12.1 -5.8 94 538 A A T 3 S+ 0 0 88 2,-0.1 -1,-0.2 -3,-0.1 -2,-0.0 0.401 77.9 112.5 -89.8 -2.5 -29.3 13.1 -2.2 95 539 A V S < S- 0 0 58 -3,-1.0 2,-0.8 1,-0.1 3,-0.1 -0.275 80.2-103.6 -65.8 155.0 -26.4 11.0 -0.5 96 540 A D >> - 0 0 138 1,-0.2 3,-2.1 2,-0.0 4,-0.8 -0.785 29.5-149.6 -80.0 109.0 -23.5 12.7 1.4 97 541 A L H >> S+ 0 0 63 -2,-0.8 4,-1.5 1,-0.3 3,-0.9 0.878 93.9 60.7 -49.0 -48.5 -20.6 12.4 -1.1 98 542 A A H 3> S+ 0 0 77 1,-0.3 4,-0.6 2,-0.2 -1,-0.3 0.715 99.9 58.4 -54.2 -25.4 -18.0 12.1 1.7 99 543 A G H <> S+ 0 0 35 -3,-2.1 4,-2.5 2,-0.2 -1,-0.3 0.914 105.9 46.6 -68.0 -44.3 -19.8 8.9 2.9 100 544 A L H < S+ 0 0 148 -4,-2.5 3,-0.7 1,-0.2 -2,-0.2 0.848 118.4 50.8 -77.7 -34.2 -17.0 3.4 2.7 104 548 A L T >X S+ 0 0 8 -4,-3.2 3,-2.5 -5,-0.2 4,-0.5 0.712 82.4 99.1 -74.4 -19.1 -15.9 2.5 -0.9 105 549 A A H 3> + 0 0 34 -5,-0.4 4,-2.1 -4,-0.3 -1,-0.2 0.628 57.1 85.6 -44.5 -23.3 -12.3 3.3 0.1 106 550 A H H <4 S+ 0 0 159 -3,-0.7 -1,-0.3 1,-0.2 -2,-0.1 0.845 96.1 41.7 -48.0 -36.6 -11.7 -0.5 0.6 107 551 A H H X4 S+ 0 0 79 -3,-2.5 3,-1.7 2,-0.2 -1,-0.2 0.823 107.2 59.3 -82.6 -32.2 -10.9 -0.6 -3.2 108 552 A V H >X>S+ 0 0 19 -4,-0.5 4,-2.3 1,-0.3 3,-1.7 0.826 90.2 75.4 -61.3 -27.9 -8.8 2.7 -3.0 109 553 A H T 3<5S+ 0 0 149 -4,-2.1 -1,-0.3 1,-0.3 -2,-0.2 0.651 71.2 84.2 -56.9 -17.1 -6.7 0.7 -0.5 110 554 A A T <45S+ 0 0 40 -3,-1.7 -1,-0.3 1,-0.2 -2,-0.2 0.834 114.1 14.6 -55.3 -35.4 -5.3 -1.2 -3.7 111 555 A E T <45S- 0 0 107 -3,-1.7 -2,-0.2 -4,-0.2 -1,-0.2 0.597 116.6-113.4-109.2 -23.5 -2.8 1.8 -4.0 112 556 A G T <5 0 0 38 -4,-2.3 -3,-0.2 1,-0.2 -4,-0.1 0.895 360.0 360.0 96.3 48.8 -3.5 3.1 -0.4 113 557 A L < 0 0 195 -5,-0.8 -1,-0.2 -8,-0.2 -4,-0.1 -0.422 360.0 360.0 74.1 360.0 -5.2 6.6 -0.8