==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-JAN-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 19-JUL-10 2RRD . COMPND 2 MOLECULE: HRDC DOMAIN FROM BLOOM SYNDROME PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR A.SATO,M.MISHIMA,A.NAGAI,S.Y.KIM,Y.ITO,T.HAKOSHIMA,J.G.JEE,K . 101 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7281.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 67 66.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 4.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 12 11.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 48 47.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 1 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 124 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -51.6 -11.3 9.9 -28.3 2 2 A I - 0 0 159 2,-0.0 2,-0.1 0, 0.0 0, 0.0 -0.747 360.0-169.7-110.8 83.6 -12.7 6.6 -27.3 3 3 A P - 0 0 84 0, 0.0 2,-0.5 0, 0.0 0, 0.0 -0.346 18.7-126.1 -71.6 152.2 -13.4 6.8 -23.5 4 4 A E + 0 0 141 -2,-0.1 2,-0.2 2,-0.0 3,-0.1 -0.889 35.5 168.0-105.1 123.1 -14.3 3.6 -21.5 5 5 A F + 0 0 146 -2,-0.5 0, 0.0 1,-0.1 0, 0.0 -0.777 51.8 43.4-126.8 171.5 -17.5 3.7 -19.4 6 6 A K S S- 0 0 184 -2,-0.2 4,-0.2 3,-0.0 -1,-0.1 0.598 96.8-122.1 69.3 10.8 -19.7 1.2 -17.5 7 7 A Q - 0 0 112 -3,-0.1 -2,-0.1 2,-0.1 3,-0.1 0.096 20.3-100.2 46.6-166.3 -16.4 -0.3 -16.2 8 8 A K S S+ 0 0 129 1,-0.1 2,-0.5 90,-0.0 -1,-0.1 0.750 101.4 18.5-113.4 -60.7 -15.8 -4.0 -16.9 9 9 A A S S- 0 0 57 2,-0.1 89,-0.3 0, 0.0 2,-0.2 -0.813 74.5-159.8-121.1 90.3 -16.6 -6.1 -13.8 10 10 A L + 0 0 123 -2,-0.5 2,-0.2 -4,-0.2 3,-0.1 -0.448 26.4 147.7 -70.1 137.9 -18.9 -4.1 -11.4 11 11 A V - 0 0 89 1,-0.7 -2,-0.1 -2,-0.2 -1,-0.0 -0.600 56.6 -37.0-175.2 107.4 -19.0 -5.3 -7.8 12 12 A A - 0 0 59 -2,-0.2 -1,-0.7 2,-0.1 0, 0.0 0.165 46.7-156.8 59.9 174.0 -19.5 -3.3 -4.6 13 13 A K S S+ 0 0 173 -3,-0.1 2,-0.6 0, 0.0 4,-0.3 0.327 76.2 25.9-147.5 -66.5 -18.0 0.2 -4.1 14 14 A V S S+ 0 0 137 1,-0.1 -2,-0.1 2,-0.1 0, 0.0 -0.641 115.4 52.0-113.3 73.1 -17.5 1.3 -0.5 15 15 A S S > S+ 0 0 81 -2,-0.6 4,-1.3 0, 0.0 5,-0.1 0.210 98.8 50.8-163.1 -52.9 -17.1 -2.0 1.4 16 16 A Q H > S+ 0 0 66 1,-0.2 4,-1.0 2,-0.2 -2,-0.1 0.844 110.2 53.7 -69.4 -34.3 -14.4 -4.2 -0.1 17 17 A R H > S+ 0 0 68 -4,-0.3 4,-2.6 2,-0.2 5,-0.2 0.869 102.9 57.3 -68.1 -37.5 -11.9 -1.4 -0.2 18 18 A E H > S+ 0 0 102 1,-0.2 4,-1.3 2,-0.2 -1,-0.2 0.908 110.4 42.9 -59.8 -43.6 -12.4 -0.7 3.5 19 19 A E H X S+ 0 0 130 -4,-1.3 4,-1.3 1,-0.2 -1,-0.2 0.701 113.0 55.5 -75.4 -20.2 -11.5 -4.2 4.4 20 20 A M H X S+ 0 0 29 -4,-1.0 4,-1.3 2,-0.2 -2,-0.2 0.891 105.7 48.3 -79.1 -42.5 -8.6 -4.0 1.9 21 21 A V H X S+ 0 0 23 -4,-2.6 4,-1.2 1,-0.2 -2,-0.2 0.870 110.5 53.2 -65.9 -36.5 -6.9 -0.9 3.4 22 22 A K H >X S+ 0 0 134 -4,-1.3 4,-1.2 -5,-0.2 3,-0.7 0.936 105.5 52.5 -63.7 -46.9 -7.2 -2.4 6.9 23 23 A K H 3X S+ 0 0 108 -4,-1.3 4,-2.9 1,-0.3 5,-0.3 0.829 103.0 60.8 -58.2 -32.1 -5.4 -5.6 5.8 24 24 A C H 3X S+ 0 0 0 -4,-1.3 4,-2.5 1,-0.2 -1,-0.3 0.873 98.3 57.0 -63.4 -37.6 -2.6 -3.4 4.4 25 25 A L H X S+ 0 0 31 -4,-1.2 4,-1.3 2,-0.2 3,-0.6 0.959 116.5 47.3 -75.3 -53.8 -1.4 -5.5 9.2 27 27 A E H 3X S+ 0 0 62 -4,-2.9 4,-1.6 1,-0.3 3,-0.4 0.913 110.8 53.2 -53.9 -46.7 0.5 -7.0 6.2 28 28 A L H 3X S+ 0 0 0 -4,-2.5 4,-2.4 -5,-0.3 -1,-0.3 0.817 100.6 63.9 -59.6 -30.6 2.8 -3.9 6.0 29 29 A T H X S+ 0 0 96 -4,-2.4 4,-2.2 1,-0.2 3,-0.6 0.935 111.4 52.9 -59.4 -48.7 9.5 -5.7 11.1 34 34 A S H 3X S+ 0 0 48 -4,-2.8 4,-0.7 1,-0.3 -1,-0.2 0.811 108.6 52.4 -57.4 -30.5 11.4 -8.0 8.8 35 35 A L H 3X S+ 0 0 9 -4,-1.6 4,-1.9 -5,-0.3 -1,-0.3 0.799 108.0 51.3 -76.0 -30.1 13.1 -5.0 7.3 36 36 A G H <<>S+ 0 0 1 -4,-1.4 5,-2.7 -3,-0.6 4,-0.4 0.931 104.7 53.1 -73.0 -47.0 14.1 -3.7 10.8 37 37 A K H <5S+ 0 0 167 -4,-2.2 -1,-0.2 1,-0.2 -2,-0.2 0.753 116.9 42.1 -60.0 -24.1 15.8 -6.9 11.9 38 38 A V H <5S+ 0 0 102 -4,-0.7 -1,-0.2 -5,-0.3 -2,-0.2 0.796 117.4 44.0 -91.9 -34.2 17.8 -6.8 8.7 39 39 A F T <5S- 0 0 81 -4,-1.9 -2,-0.2 2,-0.2 -1,-0.1 0.158 111.7-115.7 -96.2 18.0 18.6 -3.1 8.7 40 40 A G T 5S+ 0 0 73 -4,-0.4 2,-0.3 1,-0.2 -3,-0.2 0.856 78.1 118.4 51.0 39.4 19.4 -3.1 12.4 41 41 A V < - 0 0 38 -5,-2.7 -1,-0.2 -6,-0.2 -2,-0.2 -0.896 65.9-102.9-133.0 162.3 16.5 -0.9 13.1 42 42 A H >> - 0 0 156 -2,-0.3 4,-0.8 -3,-0.1 3,-0.6 -0.373 35.2-107.7 -81.4 162.4 13.2 -1.0 15.1 43 43 A Y H >> S+ 0 0 39 1,-0.3 3,-1.8 2,-0.2 4,-1.0 0.943 122.2 49.1 -52.7 -54.6 9.8 -1.5 13.6 44 44 A F H 34 S+ 0 0 127 1,-0.3 -1,-0.3 2,-0.2 -11,-0.0 0.747 99.1 71.0 -58.9 -23.3 8.7 2.1 14.1 45 45 A N H <4 S+ 0 0 85 -3,-0.6 -1,-0.3 1,-0.1 -2,-0.2 0.808 97.8 50.0 -63.9 -29.8 12.0 3.1 12.5 46 46 A I H << S- 0 0 2 -3,-1.8 2,-0.3 -4,-0.8 -2,-0.2 0.993 127.6 -8.9 -71.9 -67.2 10.6 1.9 9.2 47 47 A F < - 0 0 4 -4,-1.0 -1,-0.3 -18,-0.1 2,-0.1 -0.993 66.8-127.9-138.2 143.9 7.3 3.7 9.0 48 48 A N >> - 0 0 89 -2,-0.3 4,-2.5 22,-0.3 3,-1.2 -0.384 37.0 -98.8 -84.7 165.4 5.3 5.7 11.5 49 49 A T H 3> S+ 0 0 82 1,-0.3 4,-2.0 2,-0.2 5,-0.2 0.883 127.0 53.1 -49.1 -43.8 1.6 5.1 12.4 50 50 A V H 3> S+ 0 0 52 1,-0.2 4,-1.2 2,-0.2 -1,-0.3 0.810 110.6 48.6 -63.1 -30.0 0.7 7.9 10.0 51 51 A T H <> S+ 0 0 1 -3,-1.2 4,-2.6 2,-0.2 5,-0.3 0.938 107.3 52.2 -75.4 -50.0 2.6 6.1 7.3 52 52 A L H X S+ 0 0 8 -4,-2.5 4,-0.8 1,-0.2 -2,-0.2 0.905 113.0 45.8 -52.8 -45.9 1.2 2.6 7.8 53 53 A K H X S+ 0 0 82 -4,-2.0 4,-3.8 -5,-0.2 5,-0.3 0.862 110.4 55.3 -66.5 -36.4 -2.4 4.1 7.5 54 54 A K H X S+ 0 0 78 -4,-1.2 4,-2.0 1,-0.2 5,-0.4 0.968 103.6 51.6 -60.9 -55.8 -1.4 6.1 4.5 55 55 A L H X S+ 0 0 1 -4,-2.6 4,-0.9 1,-0.2 5,-0.3 0.759 119.8 40.3 -53.0 -25.3 -0.1 3.1 2.5 56 56 A A H < S+ 0 0 3 -4,-0.8 -2,-0.2 -5,-0.3 -1,-0.2 0.929 106.5 56.4 -88.7 -59.1 -3.5 1.5 3.4 57 57 A E H < S+ 0 0 136 -4,-3.8 -2,-0.2 1,-0.3 -3,-0.2 0.786 120.2 37.1 -44.5 -30.2 -6.0 4.3 3.0 58 58 A S H < S- 0 0 46 -4,-2.0 -1,-0.3 -5,-0.3 -2,-0.2 0.848 84.0-165.1 -90.6 -41.4 -4.6 4.6 -0.6 59 59 A L < + 0 0 5 -4,-0.9 2,-0.5 -5,-0.4 36,-0.3 0.774 47.4 125.6 59.5 26.3 -4.1 0.9 -1.2 60 60 A S - 0 0 27 -5,-0.3 2,-1.6 2,-0.1 -1,-0.2 -0.967 58.3-144.8-122.2 121.2 -1.9 1.9 -4.2 61 61 A S + 0 0 17 -2,-0.5 24,-0.0 27,-0.4 -6,-0.0 -0.612 46.7 143.0 -84.3 84.3 1.6 0.6 -4.6 62 62 A D > - 0 0 68 -2,-1.6 4,-1.6 1,-0.1 5,-0.1 -0.936 49.4-145.2-125.3 147.8 3.2 3.7 -6.2 63 63 A P H > S+ 0 0 73 0, 0.0 4,-0.7 0, 0.0 -1,-0.1 0.906 104.7 38.4 -75.8 -43.5 6.7 5.2 -5.7 64 64 A E H > S+ 0 0 156 2,-0.2 4,-1.2 1,-0.2 13,-0.0 0.849 118.3 50.2 -75.2 -35.6 5.7 8.9 -6.1 65 65 A V H 4 S+ 0 0 55 1,-0.2 3,-0.3 2,-0.2 4,-0.2 0.908 112.5 45.5 -68.7 -43.4 2.4 8.3 -4.2 66 66 A L H >< S+ 0 0 1 -4,-1.6 3,-0.5 1,-0.2 -1,-0.2 0.681 106.1 63.3 -73.7 -17.9 4.2 6.5 -1.3 67 67 A L H 3< S+ 0 0 61 -4,-0.7 -1,-0.2 1,-0.2 -2,-0.2 0.856 97.2 54.6 -74.1 -36.3 6.8 9.3 -1.3 68 68 A Q T 3< S+ 0 0 172 -4,-1.2 -1,-0.2 -3,-0.3 -2,-0.2 0.505 85.3 119.6 -75.3 -3.7 4.3 12.0 -0.4 69 69 A I S X S- 0 0 17 -3,-0.5 3,-0.5 -4,-0.2 2,-0.5 -0.306 80.8 -94.5 -63.7 145.8 3.3 9.9 2.6 70 70 A D T 3 S+ 0 0 104 -20,-0.3 -22,-0.3 1,-0.2 -1,-0.1 -0.476 110.4 4.5 -65.3 114.7 3.8 11.5 6.1 71 71 A G T 3 S+ 0 0 39 -2,-0.5 -1,-0.2 1,-0.4 2,-0.2 -0.093 103.1 114.6 102.7 -34.8 7.2 10.4 7.3 72 72 A V < + 0 0 8 -3,-0.5 -1,-0.4 -6,-0.1 2,-0.2 -0.464 42.3 178.5 -72.8 140.8 8.2 8.5 4.2 73 73 A T > - 0 0 55 -2,-0.2 4,-2.3 -3,-0.1 3,-0.3 -0.721 47.4 -87.9-131.8-178.5 11.2 9.9 2.2 74 74 A E H > S+ 0 0 152 1,-0.2 4,-1.0 -2,-0.2 5,-0.1 0.806 127.9 51.8 -62.8 -29.8 13.2 9.1 -0.9 75 75 A D H > S+ 0 0 95 2,-0.2 4,-1.2 1,-0.2 5,-0.4 0.786 111.1 46.8 -77.2 -28.7 15.5 7.0 1.2 76 76 A K H >>S+ 0 0 46 -3,-0.3 5,-1.4 2,-0.2 4,-1.2 0.823 114.4 45.9 -81.3 -34.0 12.5 5.0 2.7 77 77 A L H <5S+ 0 0 18 -4,-2.3 -2,-0.2 3,-0.2 -1,-0.2 0.695 116.6 46.0 -81.1 -20.5 10.9 4.5 -0.7 78 78 A E H <5S+ 0 0 154 -4,-1.0 -2,-0.2 -5,-0.2 -1,-0.2 0.758 126.7 27.1 -91.2 -29.3 14.2 3.4 -2.3 79 79 A K H <5S+ 0 0 115 -4,-1.2 4,-0.2 -5,-0.1 3,-0.2 0.885 138.0 22.7 -96.5 -58.2 15.3 1.1 0.5 80 80 A Y T >X5S+ 0 0 16 -4,-1.2 4,-2.8 -5,-0.4 3,-2.1 0.770 107.9 78.9 -81.5 -28.0 12.0 -0.1 2.1 81 81 A G H 3> S+ 0 0 64 -3,-2.1 4,-1.0 -4,-0.2 3,-0.5 0.889 121.3 45.9 -96.3 -61.0 9.7 -4.5 0.4 84 84 A V H >X S+ 0 0 0 -4,-2.8 3,-0.9 1,-0.3 4,-0.8 0.895 117.0 47.3 -50.7 -44.9 6.7 -2.4 1.6 85 85 A I H 3X S+ 0 0 27 -4,-2.1 4,-2.2 -5,-0.4 3,-0.4 0.815 98.6 69.9 -68.0 -29.8 5.6 -2.1 -2.0 86 86 A S H 34 S+ 0 0 73 -5,-0.5 4,-0.3 -3,-0.5 -1,-0.2 0.824 106.1 40.3 -56.3 -30.7 6.1 -5.8 -2.6 87 87 A V H << S+ 0 0 24 -4,-1.0 4,-0.4 -3,-0.9 -1,-0.3 0.644 113.2 54.7 -90.7 -19.5 3.1 -6.3 -0.3 88 88 A L H >X S+ 0 0 0 -4,-0.8 4,-1.7 -3,-0.4 3,-0.6 0.689 85.3 81.1 -87.0 -21.1 1.1 -3.3 -1.7 89 89 A Q H 3X S+ 0 0 126 -4,-2.2 4,-0.9 1,-0.3 -1,-0.2 0.856 88.0 58.8 -52.5 -36.6 1.3 -4.6 -5.3 90 90 A K H >> S+ 0 0 99 -4,-0.3 4,-1.3 -3,-0.2 3,-1.0 0.916 102.7 51.2 -59.9 -45.2 -1.6 -6.9 -4.5 91 91 A Y H <> S+ 0 0 4 -3,-0.6 4,-3.7 -4,-0.4 5,-0.3 0.886 100.4 63.3 -60.2 -39.6 -3.8 -4.0 -3.5 92 92 A S H 3X S+ 0 0 38 -4,-1.7 4,-1.0 1,-0.3 -1,-0.3 0.804 107.4 44.2 -55.2 -29.5 -3.0 -2.4 -6.9 93 93 A E H << S+ 0 0 93 -3,-1.0 -1,-0.3 -4,-0.9 -2,-0.2 0.757 116.2 45.8 -86.0 -27.8 -4.7 -5.3 -8.5 94 94 A W H < S+ 0 0 113 -4,-1.3 -2,-0.2 -3,-0.3 -3,-0.2 0.783 110.5 53.4 -84.2 -30.3 -7.6 -5.3 -6.1 95 95 A T H < S+ 0 0 59 -4,-3.7 -2,-0.2 -36,-0.3 -3,-0.2 0.887 103.2 65.4 -71.5 -40.2 -8.1 -1.5 -6.3 96 96 A S S < S- 0 0 70 -4,-1.0 0, 0.0 -5,-0.3 0, 0.0 -0.518 92.3-106.6 -84.2 152.2 -8.3 -1.6 -10.1 97 97 A P S S+ 0 0 61 0, 0.0 -1,-0.1 0, 0.0 -87,-0.1 -0.147 80.0 27.3 -70.9 170.0 -11.2 -3.3 -12.0 98 98 A A - 0 0 37 -89,-0.3 -2,-0.0 1,-0.1 2,-0.0 0.289 65.3-136.3 59.5 164.0 -10.9 -6.6 -13.9 99 99 A E + 0 0 128 -5,-0.0 2,-0.2 0, 0.0 -1,-0.1 -0.461 35.7 155.0-157.6 75.7 -8.3 -9.3 -13.0 100 100 A D 0 0 141 1,-0.1 0, 0.0 -2,-0.0 0, 0.0 -0.622 360.0 360.0-103.3 164.0 -6.5 -10.9 -16.0 101 101 A S 0 0 184 -2,-0.2 -1,-0.1 0, 0.0 0, 0.0 0.411 360.0 360.0-154.4 360.0 -3.1 -12.6 -16.2