==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=12-AUG-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER LIGASE 12-JAN-12 2RSD . COMPND 2 MOLECULE: E3 SUMO-PROTEIN LIGASE SIZ1; . SOURCE 2 ORGANISM_SCIENTIFIC: ORYZA SATIVA JAPONICA GROUP; . AUTHOR H.SHINDO,W.TSUCHIYA,R.SUZUKI,T.YAMAZAKI . 68 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5522.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 32 47.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 3 4.4 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 4 5.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 13.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 5.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 7 10.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 105 A G 0 0 77 0, 0.0 16,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -54.0 12.0 10.7 3.3 2 106 A S + 0 0 105 0, 0.0 3,-0.1 0, 0.0 0, 0.0 0.218 360.0 6.8-160.3 -57.4 10.5 14.0 4.5 3 107 A D S S+ 0 0 140 1,-0.1 0, 0.0 0, 0.0 0, 0.0 -0.026 92.7 106.4-130.9 28.7 8.2 15.6 2.0 4 108 A S + 0 0 72 2,-0.1 2,-1.0 1,-0.1 7,-0.3 0.042 46.2 115.7 -96.4 25.2 8.0 12.9 -0.7 5 109 A F - 0 0 102 5,-0.1 5,-0.2 -3,-0.1 -1,-0.1 -0.773 51.3-163.5 -99.5 92.3 4.5 12.0 0.4 6 110 A Q - 0 0 114 3,-1.5 -2,-0.1 -2,-1.0 0, 0.0 -0.354 26.7-123.8 -73.5 153.9 2.2 12.8 -2.6 7 111 A P S S+ 0 0 99 0, 0.0 3,-0.2 0, 0.0 -1,-0.1 0.698 114.4 24.9 -69.8 -19.6 -1.6 13.1 -2.2 8 112 A E S S+ 0 0 121 1,-0.2 2,-0.4 26,-0.0 24,-0.1 0.591 127.9 46.2-116.4 -23.3 -2.0 10.4 -4.9 9 113 A A + 0 0 42 25,-0.1 -3,-1.5 17,-0.0 2,-0.5 -0.756 66.8 150.5-126.2 85.1 1.3 8.6 -4.6 10 114 A K E -a 34 0A 82 23,-1.3 25,-2.1 -2,-0.4 2,-0.9 -0.933 32.7-151.2-120.9 109.5 2.2 7.9 -0.9 11 115 A V E +a 35 0A 25 -2,-0.5 2,-0.5 -7,-0.3 25,-0.2 -0.684 24.1 167.6 -81.9 107.4 4.3 4.8 -0.2 12 116 A R + 0 0 150 23,-2.0 2,-0.3 -2,-0.9 6,-0.1 -0.820 8.3 159.9-125.2 91.6 3.4 3.6 3.3 13 117 A C > - 0 0 9 -2,-0.5 3,-2.6 23,-0.1 23,-0.1 -0.765 53.0-114.5-110.8 157.2 4.8 0.1 4.0 14 118 A I T 3 S+ 0 0 139 1,-0.3 -1,-0.1 -2,-0.3 22,-0.0 0.737 118.7 60.8 -59.1 -22.1 5.4 -1.6 7.4 15 119 A C T 3 S- 0 0 52 2,-0.2 -1,-0.3 22,-0.0 3,-0.1 0.490 105.3-132.6 -83.4 -3.7 9.1 -1.5 6.4 16 120 A S < + 0 0 111 -3,-2.6 2,-0.5 1,-0.2 -2,-0.1 0.863 63.5 132.1 53.5 38.3 8.9 2.3 6.4 17 121 A S - 0 0 42 2,-0.1 -1,-0.2 1,-0.1 -2,-0.2 -0.961 41.6-173.2-126.8 115.7 10.7 2.2 3.0 18 122 A T + 0 0 65 -2,-0.5 -7,-0.1 -3,-0.1 2,-0.1 -0.043 51.6 119.5 -94.2 31.4 9.5 4.2 0.0 19 123 A M S S- 0 0 136 1,-0.1 2,-1.2 -8,-0.0 -2,-0.1 -0.234 79.9 -86.2 -87.3 180.0 12.1 2.6 -2.2 20 124 A V - 0 0 123 -2,-0.1 -2,-0.1 2,-0.0 -1,-0.1 -0.704 55.0-178.2 -92.5 88.2 11.5 0.5 -5.3 21 125 A N - 0 0 38 -2,-1.2 3,-0.2 -4,-0.1 17,-0.0 0.110 51.4 -71.8 -70.5-169.2 11.1 -3.0 -4.0 22 126 A D S S- 0 0 145 1,-0.3 2,-0.3 15,-0.0 -1,-0.1 0.870 118.3 -7.0 -54.7 -39.1 10.6 -6.2 -6.1 23 127 A S - 0 0 56 2,-0.0 15,-2.6 0, 0.0 16,-0.7 -0.873 67.9-154.3-163.8 126.2 7.1 -5.0 -6.9 24 128 A M E -B 37 0A 53 -2,-0.3 2,-0.3 13,-0.3 13,-0.2 -0.647 9.4-167.9-101.3 159.5 5.0 -2.1 -5.6 25 129 A I E -B 36 0A 29 11,-2.2 11,-3.0 -2,-0.2 2,-0.3 -0.985 14.8-134.7-150.3 136.4 1.2 -1.8 -5.5 26 130 A Q E -B 35 0A 59 -2,-0.3 31,-0.3 9,-0.3 9,-0.2 -0.666 35.5 -99.2 -92.0 145.5 -1.3 1.1 -4.9 27 131 A C - 0 0 8 7,-1.7 31,-0.2 -2,-0.3 -1,-0.1 -0.196 21.9-129.5 -59.2 151.5 -4.3 0.7 -2.6 28 132 A E S S+ 0 0 105 29,-2.4 2,-0.6 5,-0.1 -1,-0.1 0.147 84.0 94.3 -89.4 19.4 -7.6 0.1 -4.2 29 133 A D >> - 0 0 34 28,-0.2 3,-2.5 1,-0.1 4,-2.5 -0.940 60.2-160.5-118.1 112.6 -9.1 2.9 -2.3 30 134 A Q T 34 S+ 0 0 165 -2,-0.6 -1,-0.1 1,-0.3 -3,-0.0 0.755 97.2 59.6 -59.0 -24.0 -9.3 6.4 -4.0 31 135 A R T 34 S+ 0 0 235 1,-0.1 -1,-0.3 -3,-0.1 -3,-0.0 0.347 116.5 32.6 -86.2 6.1 -9.7 7.8 -0.4 32 136 A C T <4 - 0 0 23 -3,-2.5 -2,-0.2 -5,-0.1 -1,-0.1 0.654 68.1-177.9-123.1 -59.7 -6.3 6.3 0.5 33 137 A Q < + 0 0 36 -4,-2.5 -23,-1.3 1,-0.2 2,-0.5 0.938 29.1 156.4 51.8 53.2 -4.0 6.2 -2.6 34 138 A V E -a 10 0A 6 -5,-0.2 -7,-1.7 -25,-0.2 2,-0.3 -0.947 32.9-146.5-115.6 125.5 -1.2 4.4 -0.6 35 139 A W E +aB 11 26A 81 -25,-2.1 -23,-2.0 -2,-0.5 2,-0.3 -0.658 21.0 177.5 -90.0 143.6 1.5 2.4 -2.3 36 140 A Q E - B 0 25A 13 -11,-3.0 -11,-2.2 -2,-0.3 2,-0.6 -0.961 37.8 -93.2-142.9 158.9 3.0 -0.7 -0.6 37 141 A H E >> - B 0 24A 9 -2,-0.3 4,-2.1 -13,-0.2 3,-1.0 -0.629 26.2-152.2 -77.0 114.3 5.5 -3.5 -1.4 38 142 A L T 34 S+ 0 0 22 -15,-2.6 4,-0.2 -2,-0.6 -1,-0.2 0.883 98.7 54.8 -51.5 -42.2 3.6 -6.4 -2.9 39 143 A N T 34 S+ 0 0 92 -16,-0.7 3,-0.3 1,-0.2 -1,-0.3 0.818 108.8 48.8 -62.3 -31.0 6.4 -8.7 -1.5 40 144 A C T <4 S+ 0 0 53 -3,-1.0 -1,-0.2 1,-0.2 -2,-0.2 0.831 117.8 39.0 -77.6 -34.1 5.7 -7.2 2.0 41 145 A V S < S+ 0 0 45 -4,-2.1 2,-0.5 2,-0.0 -1,-0.2 0.199 97.2 105.0 -99.6 14.2 1.9 -7.7 1.7 42 146 A L - 0 0 23 -3,-0.3 11,-0.1 -5,-0.2 9,-0.1 -0.847 49.2-169.6-100.9 128.4 2.3 -11.1 -0.0 43 147 A I - 0 0 126 -2,-0.5 2,-0.1 9,-0.4 -3,-0.1 -0.810 10.8-160.6-120.2 90.6 1.6 -14.2 2.0 44 148 A P - 0 0 48 0, 0.0 7,-0.2 0, 0.0 6,-0.0 -0.389 26.9-123.9 -69.8 143.9 2.8 -17.3 0.0 45 149 A D S S+ 0 0 137 5,-0.6 6,-0.1 -2,-0.1 -2,-0.0 0.721 96.9 17.9 -59.3 -20.2 1.4 -20.7 1.0 46 150 A K S > S- 0 0 136 4,-0.1 3,-1.7 0, 0.0 2,-0.5 -0.975 96.9 -83.3-149.4 160.6 5.0 -21.8 1.4 47 151 A P T 3 S+ 0 0 127 0, 0.0 3,-0.1 0, 0.0 -2,-0.0 -0.528 115.7 2.7 -69.7 115.9 8.5 -20.3 1.9 48 152 A G T 3 S+ 0 0 83 -2,-0.5 2,-0.1 1,-0.2 3,-0.0 0.631 109.1 119.7 83.5 14.0 9.9 -19.4 -1.5 49 153 A E S < S- 0 0 120 -3,-1.7 2,-0.8 1,-0.1 -1,-0.2 -0.291 79.1 -60.1 -99.6-173.2 6.8 -20.4 -3.3 50 154 A S - 0 0 86 -2,-0.1 -5,-0.6 -3,-0.1 -1,-0.1 -0.596 59.0-138.8 -74.4 106.8 4.3 -18.6 -5.5 51 155 A A - 0 0 36 -2,-0.8 2,-0.9 -7,-0.2 -9,-0.0 -0.131 20.0-105.5 -60.9 161.0 2.9 -15.7 -3.3 52 156 A E - 0 0 129 -9,-0.0 -9,-0.4 1,-0.0 -1,-0.1 -0.798 36.8-176.8 -95.9 101.9 -0.8 -14.9 -3.5 53 157 A V - 0 0 78 -2,-0.9 -11,-0.1 -11,-0.1 4,-0.1 -0.799 11.8-161.3-102.8 94.9 -1.2 -11.6 -5.4 54 158 A P - 0 0 59 0, 0.0 3,-0.1 0, 0.0 -2,-0.0 -0.193 25.3-118.6 -69.7 163.6 -4.9 -10.7 -5.4 55 159 A P S S+ 0 0 126 0, 0.0 2,-0.5 0, 0.0 -2,-0.0 0.909 100.3 47.3 -69.8 -44.4 -6.6 -8.2 -7.8 56 160 A V S S- 0 0 62 2,-0.0 2,-0.5 -28,-0.0 -29,-0.1 -0.890 70.8-167.7-106.0 125.8 -7.6 -5.8 -5.2 57 161 A F - 0 0 17 -2,-0.5 -29,-2.4 -31,-0.3 2,-0.5 -0.949 2.4-172.1-116.2 126.9 -5.2 -4.6 -2.5 58 162 A Y - 0 0 66 -2,-0.5 -31,-0.0 -31,-0.2 -2,-0.0 -0.967 18.9-132.9-122.0 121.3 -6.2 -2.7 0.6 59 163 A C > - 0 0 4 -2,-0.5 4,-3.0 -25,-0.1 5,-0.1 0.143 41.1 -86.1 -56.1-178.7 -3.7 -1.2 3.0 60 164 A E H > S+ 0 0 94 2,-0.2 4,-3.0 1,-0.2 5,-0.3 0.925 128.1 54.6 -59.0 -47.2 -4.0 -1.7 6.8 61 165 A L H > S+ 0 0 104 1,-0.2 4,-2.5 2,-0.2 -1,-0.2 0.956 116.1 36.2 -51.4 -58.5 -6.3 1.4 7.1 62 166 A C H > S+ 0 0 3 1,-0.2 4,-1.9 2,-0.2 5,-0.2 0.887 114.0 59.4 -63.6 -40.1 -8.8 0.0 4.5 63 167 A R H X>S+ 0 0 156 -4,-3.0 4,-1.8 2,-0.2 5,-1.0 0.932 111.8 38.7 -54.2 -50.5 -8.3 -3.5 5.7 64 168 A L H <5S+ 0 0 148 -4,-3.0 -1,-0.2 2,-0.2 -2,-0.2 0.918 114.6 53.2 -67.4 -44.8 -9.4 -2.7 9.2 65 169 A S H <5S+ 0 0 93 -4,-2.5 -1,-0.2 -5,-0.3 -2,-0.2 0.756 116.4 41.4 -62.2 -24.0 -12.2 -0.3 8.0 66 170 A R H <5S- 0 0 120 -4,-1.9 -1,-0.2 -5,-0.2 -2,-0.2 0.718 92.0-150.7 -94.1 -26.5 -13.4 -3.2 5.9 67 171 A A T <5 0 0 88 -4,-1.8 -3,-0.2 -5,-0.2 -4,-0.1 0.819 360.0 360.0 58.3 31.6 -12.9 -5.9 8.5 68 172 A D < 0 0 140 -5,-1.0 -4,-0.1 0, 0.0 -1,-0.1 0.778 360.0 360.0 -73.4 360.0 -12.3 -8.4 5.7