==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=8-FEB-2013 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER MEMBRANE PROTEIN/RNA 08-MAR-12 2RSK . COMPND 2 MOLECULE: RNA (5'-R(*GP*GP*AP*GP*GP*AP*GP*GP*AP*GP*GP*A)-3' . SOURCE 2 SYNTHETIC: YES; . AUTHOR T.MASHIMA,F.NISHIKAWA,Y.O.KAMATARI,H.FUJIWARA,S.NISHIKAWA,K. . 24 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 2278.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 2 8.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 8.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 25 C G 0 0 100 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 152.3 -5.9 10.2 -0.8 2 26 C Q - 0 0 92 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.758 360.0 -46.7-116.7 -64.5 -4.2 7.0 -0.3 3 27 C W S S- 0 0 137 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.499 131.6 -0.7-139.5 -51.8 -1.0 7.1 2.0 4 28 C N S > S- 0 0 39 0, 0.0 3,-1.6 0, 0.0 7,-0.1 -0.518 109.0-142.0-144.5 33.3 1.3 9.8 1.2 5 29 C K T 3 - 0 0 87 1,-0.3 0, 0.0 2,-0.1 0, 0.0 0.081 41.9 -49.0 -40.3 125.0 -1.1 10.5 -1.2 6 30 C P T 3 S+ 0 0 83 0, 0.0 -1,-0.3 0, 0.0 0, 0.0 0.745 107.8 112.1 15.3 44.1 -0.4 11.6 -4.6 7 31 C S < - 0 0 83 -3,-1.6 -2,-0.1 0, 0.0 4,-0.1 -0.433 59.7-173.7-124.1 28.6 1.5 13.8 -2.6 8 32 C K + 0 0 86 1,-0.2 -3,-0.1 2,-0.1 0, 0.0 -0.178 18.3 166.8 -47.1 94.2 4.2 11.9 -4.4 9 33 C P S S+ 0 0 82 0, 0.0 -1,-0.2 0, 0.0 -4,-0.0 0.942 91.9 2.3 -75.3 -52.7 7.3 13.2 -2.7 10 34 C K S S- 0 0 135 -3,-0.1 -2,-0.1 0, 0.0 0, 0.0 0.743 95.9-139.4-100.3 -37.6 9.5 10.5 -4.0 11 35 C T 0 0 64 -7,-0.1 -3,-0.1 -4,-0.1 0, 0.0 0.766 360.0 360.0 78.9 32.8 6.6 9.1 -5.9 12 36 C N 0 0 165 0, 0.0 -1,-0.0 0, 0.0 -4,-0.0 0.522 360.0 360.0 -3.8 360.0 7.7 5.7 -5.1 13 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 14 37 D G 0 0 96 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 152.5 -5.9 -10.2 0.7 15 38 D Q - 0 0 90 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.762 360.0 -47.6-116.2 -64.0 -4.1 -7.0 0.2 16 39 D W S S- 0 0 134 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.494 131.1 -0.5-140.8 -51.3 -0.9 -7.0 -2.0 17 40 D N S > S- 0 0 36 7,-0.0 3,-1.7 5,-0.0 7,-0.1 -0.519 108.7-141.8-145.1 33.5 1.4 -9.7 -1.1 18 41 D K T 3 - 0 0 86 1,-0.3 0, 0.0 2,-0.1 0, 0.0 0.080 42.4 -48.9 -40.3 124.6 -1.0 -10.4 1.3 19 42 D P T 3 S+ 0 0 85 0, 0.0 -1,-0.3 0, 0.0 0, 0.0 0.751 109.3 110.8 15.3 44.6 -0.4 -11.5 4.7 20 43 D S < - 0 0 82 -3,-1.7 4,-0.2 0, 0.0 -2,-0.1 -0.420 59.4-174.5-126.5 28.4 1.6 -13.7 2.7 21 44 D K + 0 0 88 1,-0.2 -3,-0.1 3,-0.1 0, 0.0 -0.177 16.9 162.0 -47.1 91.2 4.2 -11.7 4.4 22 45 D P S S+ 0 0 74 0, 0.0 -1,-0.2 0, 0.0 -4,-0.0 0.958 89.8 8.0 -78.9 -60.5 7.3 -13.1 2.6 23 46 D K S S- 0 0 145 -3,-0.1 -2,-0.1 2,-0.0 0, 0.0 0.725 102.6-138.9 -88.3 -25.8 9.7 -10.4 3.5 24 47 D T 0 0 65 1,-0.2 -3,-0.1 -4,-0.2 -7,-0.0 0.664 360.0 360.0 72.7 25.4 6.9 -9.3 5.6 25 48 D N 0 0 144 0, 0.0 -1,-0.2 0, 0.0 -4,-0.0 0.813 360.0 360.0 28.1 360.0 7.6 -5.8 4.6