==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-AUG-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER NUCLEAR PROTEIN 18-APR-12 2RSN . COMPND 2 MOLECULE: CHROMO DOMAIN-CONTAINING PROTEIN 1; . SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; . AUTHOR H.SHIMOJO,Y.NISHIMURA . 93 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7978.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 50 53.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 20 21.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 11 11.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 9.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 9 9.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 232 0, 0.0 2,-0.4 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 168.7 -39.5 -9.0 2.4 2 2 A V - 0 0 118 2,-0.0 2,-0.8 0, 0.0 0, 0.0 -0.880 360.0-134.8-110.8 144.4 -37.6 -12.0 3.7 3 3 A S + 0 0 122 -2,-0.4 2,-0.3 2,-0.0 0, 0.0 -0.859 43.7 144.5-105.1 100.4 -36.0 -12.0 7.1 4 4 A V - 0 0 119 -2,-0.8 -2,-0.0 0, 0.0 0, 0.0 -0.924 37.3-137.1-130.8 156.5 -32.5 -13.4 6.9 5 5 A K - 0 0 148 -2,-0.3 -2,-0.0 1,-0.1 0, 0.0 -0.776 36.7 -87.2-109.2 159.5 -29.3 -12.7 8.6 6 6 A P - 0 0 106 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 -0.170 39.7-136.6 -60.8 158.9 -25.8 -12.5 7.0 7 7 A L - 0 0 111 0, 0.0 2,-1.9 0, 0.0 3,-0.3 -0.598 32.7 -91.7-109.9 163.0 -23.7 -15.6 6.7 8 8 A P + 0 0 111 0, 0.0 4,-0.1 0, 0.0 0, 0.0 -0.671 63.4 153.1 -76.6 83.0 -20.0 -16.0 7.4 9 9 A D + 0 0 128 -2,-1.9 2,-0.4 2,-0.1 0, 0.0 0.682 58.6 63.3 -84.4 -23.2 -19.1 -15.2 3.8 10 10 A I S S- 0 0 141 -3,-0.3 2,-0.1 1,-0.0 -1,-0.0 -0.885 95.9-113.1-104.4 134.5 -15.7 -14.0 4.8 11 11 A D - 0 0 109 -2,-0.4 -2,-0.1 1,-0.1 -1,-0.0 -0.370 18.0-163.4 -67.3 142.7 -13.3 -16.5 6.4 12 12 A S + 0 0 118 -4,-0.1 2,-0.2 -2,-0.1 -1,-0.1 0.477 64.8 95.5-101.7 -12.1 -12.5 -15.9 10.0 13 13 A N S S- 0 0 113 1,-0.0 2,-0.4 0, 0.0 -2,-0.1 -0.522 76.7-123.3 -81.1 147.1 -9.5 -18.2 9.8 14 14 A E + 0 0 187 -2,-0.2 2,-0.1 1,-0.1 -2,-0.1 -0.771 64.3 91.3 -93.9 135.8 -6.0 -16.8 9.1 15 15 A G S S+ 0 0 50 -2,-0.4 2,-0.8 0, 0.0 -1,-0.1 -0.482 74.6 18.0-175.7-105.6 -4.1 -18.1 6.1 16 16 A E + 0 0 189 -2,-0.1 3,-0.2 1,-0.1 0, 0.0 -0.838 47.8 157.8-106.8 103.6 -3.9 -17.0 2.6 17 17 A T > + 0 0 84 -2,-0.8 3,-2.8 1,-0.1 4,-0.3 0.057 31.0 127.2-109.5 22.2 -5.0 -13.4 2.1 18 18 A D G > + 0 0 110 1,-0.3 3,-1.1 2,-0.2 -1,-0.1 0.787 62.6 70.5 -54.0 -32.5 -3.0 -13.0 -1.2 19 19 A A G 3 S+ 0 0 84 1,-0.3 -1,-0.3 -3,-0.2 3,-0.1 0.746 116.1 23.2 -55.0 -27.5 -6.2 -11.8 -2.9 20 20 A D G < S+ 0 0 71 -3,-2.8 2,-0.4 1,-0.2 -1,-0.3 0.141 123.0 63.5-126.9 15.2 -5.9 -8.6 -0.8 21 21 A V < + 0 0 36 -3,-1.1 2,-0.3 -4,-0.3 63,-0.3 -0.931 54.7 179.0-148.0 118.9 -2.1 -8.7 -0.2 22 22 A Y E -A 83 0A 60 61,-2.9 61,-2.9 62,-0.4 2,-0.1 -0.802 38.7 -89.0-112.2 161.6 0.8 -8.6 -2.5 23 23 A E E -AB 82 45A 71 22,-1.2 22,-1.9 -2,-0.3 2,-0.7 -0.405 26.0-142.1 -71.8 142.6 4.4 -8.6 -1.7 24 24 A V E +AB 81 44A 1 57,-2.9 57,-0.7 20,-0.2 20,-0.2 -0.919 19.0 177.9-103.7 109.1 6.3 -5.6 -1.0 25 25 A E E - 0 0 64 18,-3.0 2,-0.3 -2,-0.7 -1,-0.2 0.959 63.8 -64.4 -72.9 -54.7 9.7 -6.0 -2.5 26 26 A D E - B 0 43A 51 17,-0.6 17,-2.4 -3,-0.2 -1,-0.4 -0.943 53.6 -81.3-179.0 176.0 10.7 -2.5 -1.3 27 27 A I E - B 0 42A 5 -2,-0.3 15,-0.2 39,-0.2 3,-0.1 -0.734 27.9-173.8 -94.3 143.6 9.8 1.2 -1.8 28 28 A L E - 0 0 83 13,-3.3 2,-0.3 1,-0.4 14,-0.1 0.694 65.7 -27.6-107.9 -28.2 11.2 3.0 -4.8 29 29 A A E - B 0 41A 30 12,-0.7 12,-3.1 2,-0.0 -1,-0.4 -0.949 59.7-129.0-171.8 178.0 10.1 6.6 -4.0 30 30 A D E - B 0 40A 29 10,-0.3 2,-0.3 -2,-0.3 10,-0.3 -0.881 15.4-179.6-140.7 171.0 7.3 8.5 -2.2 31 31 A R E - B 0 39A 127 8,-2.7 8,-3.2 -2,-0.3 2,-0.4 -0.961 13.9-146.5-163.5 160.9 4.8 11.3 -2.7 32 32 A V E - B 0 38A 92 -2,-0.3 6,-0.3 6,-0.3 2,-0.1 -0.994 16.1-136.4-136.9 140.1 2.1 13.1 -0.7 33 33 A N - 0 0 46 4,-3.4 3,-0.1 -2,-0.4 6,-0.0 -0.324 21.1-121.5 -83.8 178.1 -1.2 14.6 -2.0 34 34 A K S S+ 0 0 196 1,-0.2 -1,-0.1 2,-0.1 0, 0.0 0.725 109.9 67.2 -90.3 -22.3 -2.6 17.9 -1.1 35 35 A N S S- 0 0 141 2,-0.1 -1,-0.2 1,-0.1 -3,-0.0 0.650 124.1 -97.6 -69.4 -20.2 -5.7 16.2 0.2 36 36 A G S S+ 0 0 60 1,-0.4 2,-0.5 -3,-0.1 -2,-0.1 0.661 81.9 127.7 108.7 22.3 -3.7 14.6 3.0 37 37 A I - 0 0 64 19,-0.0 -4,-3.4 20,-0.0 -1,-0.4 -0.941 45.1-148.9-113.6 131.7 -2.9 11.2 1.7 38 38 A N E -B 32 0A 33 -2,-0.5 19,-2.0 -6,-0.3 20,-0.4 -0.799 18.2-174.9 -97.7 144.2 0.6 9.9 1.6 39 39 A E E -BC 31 56A 25 -8,-3.2 -8,-2.7 -2,-0.4 2,-0.3 -0.920 9.5-159.1-139.5 155.0 1.7 7.5 -1.2 40 40 A Y E -BC 30 55A 7 15,-2.8 15,-2.5 -2,-0.3 2,-1.0 -0.987 29.0-113.8-139.7 149.4 4.7 5.5 -2.0 41 41 A Y E -BC 29 54A 68 -12,-3.1 -13,-3.3 -2,-0.3 -12,-0.7 -0.736 44.8-167.5 -81.6 99.9 6.1 3.9 -5.2 42 42 A I E -BC 27 53A 0 11,-3.0 11,-1.4 -2,-1.0 2,-1.0 -0.773 21.4-145.9 -97.5 133.8 5.9 0.2 -4.2 43 43 A K E -B 26 0A 37 -17,-2.4 -18,-3.0 -2,-0.4 -17,-0.6 -0.867 23.2-153.6 -95.4 101.3 7.5 -2.6 -6.1 44 44 A W E -B 24 0A 0 -2,-1.0 3,-0.4 -20,-0.2 -20,-0.2 -0.637 5.1-152.4 -76.9 123.8 5.0 -5.3 -5.7 45 45 A A E S+B 23 0A 10 -22,-1.9 -22,-1.2 -2,-0.5 3,-0.1 -0.610 76.2 47.6 -90.5 159.5 6.5 -8.7 -5.9 46 46 A G S S+ 0 0 67 1,-0.5 -1,-0.2 -2,-0.2 2,-0.2 0.062 104.9 77.4 94.6 -25.2 4.5 -11.7 -7.0 47 47 A Y S S- 0 0 134 -3,-0.4 -1,-0.5 1,-0.2 5,-0.1 -0.464 100.8 -57.3-104.8-179.2 3.3 -9.7 -9.9 48 48 A D > - 0 0 83 -2,-0.2 3,-1.5 -3,-0.1 -1,-0.2 -0.154 49.4-116.7 -55.6 148.7 4.9 -8.6 -13.1 49 49 A W G > S+ 0 0 190 1,-0.3 3,-0.5 2,-0.1 -1,-0.1 0.811 115.0 52.3 -63.2 -25.1 8.1 -6.7 -12.9 50 50 A Y G 3 S+ 0 0 171 1,-0.2 -1,-0.3 -7,-0.1 -2,-0.1 0.146 83.6 94.0 -98.7 21.3 6.5 -3.6 -14.5 51 51 A D G < + 0 0 18 -3,-1.5 -1,-0.2 -7,-0.2 -2,-0.1 0.626 49.6 127.9 -91.0 -17.0 3.6 -3.6 -12.0 52 52 A N < + 0 0 37 -3,-0.5 2,-0.3 -4,-0.2 -9,-0.2 -0.112 30.7 154.5 -49.1 136.1 5.1 -1.1 -9.6 53 53 A T E -C 42 0A 58 -11,-1.4 -11,-3.0 -13,-0.1 2,-0.4 -0.879 46.6 -80.3-153.3 176.1 2.9 1.8 -8.8 54 54 A W E +C 41 0A 107 -13,-0.3 -13,-0.3 -2,-0.3 -24,-0.1 -0.744 45.4 178.4 -90.6 134.7 2.1 4.4 -6.1 55 55 A E E -C 40 0A 6 -15,-2.5 -15,-2.8 -2,-0.4 2,-0.1 -0.970 30.5-106.1-133.9 149.3 -0.0 3.2 -3.2 56 56 A P E >> -C 39 0A 32 0, 0.0 3,-1.7 0, 0.0 4,-0.5 -0.377 29.0-115.9 -70.3 158.9 -1.2 5.1 -0.1 57 57 A E G >4 S+ 0 0 45 -19,-2.0 3,-1.1 1,-0.3 6,-0.1 0.797 111.7 76.5 -63.2 -25.1 0.3 4.3 3.3 58 58 A Q G >4 S+ 0 0 102 -20,-0.4 3,-0.5 1,-0.3 -1,-0.3 0.786 96.3 42.8 -57.7 -35.2 -3.1 3.1 4.2 59 59 A N G <4 S+ 0 0 17 -3,-1.7 25,-2.4 1,-0.2 3,-0.5 0.607 101.8 72.0 -87.3 -10.5 -2.5 -0.1 2.2 60 60 A L G X< + 0 0 0 -3,-1.1 3,-0.7 -4,-0.5 -1,-0.2 0.166 56.4 124.1 -91.3 18.7 1.0 -0.4 3.7 61 61 A F T < S+ 0 0 140 -3,-0.5 3,-0.3 1,-0.3 -1,-0.2 0.728 83.1 37.9 -52.2 -28.0 -0.3 -1.4 7.1 62 62 A G T > S+ 0 0 26 -3,-0.5 3,-0.5 1,-0.2 -1,-0.3 0.711 109.6 61.8 -95.4 -22.2 1.8 -4.6 6.9 63 63 A A T <> + 0 0 0 -3,-0.7 4,-2.9 1,-0.2 5,-0.3 0.059 64.1 117.3 -97.1 29.9 4.7 -3.0 5.2 64 64 A E H 3> S+ 0 0 73 -3,-0.3 4,-2.8 1,-0.2 5,-0.4 0.868 72.9 57.2 -62.4 -36.0 5.5 -0.6 8.0 65 65 A K H <> S+ 0 0 141 -3,-0.5 4,-1.7 2,-0.2 -1,-0.2 0.966 114.9 34.4 -59.3 -56.3 8.8 -2.2 8.5 66 66 A V H > S+ 0 0 19 2,-0.2 4,-1.9 1,-0.2 -39,-0.2 0.865 121.4 49.0 -69.3 -37.5 10.0 -1.6 4.9 67 67 A L H X S+ 0 0 0 -4,-2.9 4,-2.9 2,-0.2 5,-0.2 0.934 112.3 45.0 -69.1 -50.4 8.2 1.8 4.6 68 68 A K H X S+ 0 0 82 -4,-2.8 4,-1.7 -5,-0.3 -1,-0.2 0.847 109.6 58.1 -63.6 -35.0 9.4 3.2 7.9 69 69 A K H X S+ 0 0 98 -4,-1.7 4,-2.2 -5,-0.4 -1,-0.2 0.927 109.2 46.1 -53.9 -47.7 12.9 1.9 6.9 70 70 A W H X S+ 0 0 46 -4,-1.9 4,-3.2 1,-0.2 -2,-0.2 0.974 114.2 46.1 -58.9 -56.2 12.5 4.0 3.7 71 71 A K H < S+ 0 0 50 -4,-2.9 -1,-0.2 1,-0.2 -2,-0.2 0.691 109.9 55.6 -63.2 -23.3 11.3 7.1 5.6 72 72 A K H < S+ 0 0 163 -4,-1.7 -1,-0.2 -5,-0.2 -2,-0.2 0.935 117.7 33.5 -71.7 -48.1 14.1 6.6 8.1 73 73 A R H < S+ 0 0 210 -4,-2.2 2,-0.4 -5,-0.2 -2,-0.2 0.806 129.9 32.5 -79.7 -27.0 16.7 6.7 5.4 74 74 A K < 0 0 81 -4,-3.2 -1,-0.1 -5,-0.2 0, 0.0 -0.974 360.0 360.0-134.0 136.3 14.9 9.2 3.2 75 75 A K 0 0 158 -2,-0.4 -4,-0.1 -3,-0.1 -3,-0.1 -0.843 360.0 360.0 -92.6 360.0 12.6 12.0 4.1 76 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 77 1 B A 0 0 151 0, 0.0 2,-0.5 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 163.2 11.0 -18.8 3.0 78 2 B R - 0 0 158 1,-0.0 2,-0.8 0, 0.0 0, 0.0 -0.749 360.0-124.3 -83.7 124.1 12.4 -15.3 2.4 79 3 B T + 0 0 135 -2,-0.5 2,-0.3 2,-0.0 -1,-0.0 -0.586 55.3 142.7 -67.6 106.6 11.6 -13.0 5.2 80 4 B K - 0 0 49 -2,-0.8 2,-0.3 -14,-0.0 -55,-0.1 -0.939 45.6-112.6-145.6 166.2 9.8 -10.1 3.4 81 5 B Q E -A 24 0A 37 -57,-0.7 -57,-2.9 -2,-0.3 2,-0.3 -0.671 24.0-165.5-103.3 152.7 7.0 -7.7 3.8 82 6 B T E -A 23 0A 46 -59,-0.3 2,-0.3 -2,-0.3 -59,-0.3 -0.908 3.9-173.8-133.5 162.6 3.7 -7.5 2.0 83 7 B A E -A 22 0A 0 -61,-2.9 -61,-2.9 -2,-0.3 -23,-0.2 -0.905 35.6 -99.0-147.7 172.9 0.9 -4.9 1.7 84 8 B R - 0 0 66 -25,-2.4 -62,-0.4 -2,-0.3 -1,-0.2 0.983 34.0-152.2 -60.2 -68.8 -2.6 -4.7 0.1 85 9 B X - 0 0 27 -29,-0.2 2,-1.8 -64,-0.1 -30,-0.1 0.696 27.7-113.7 78.5 107.9 -2.3 -2.9 -3.2 86 10 B S - 0 0 63 1,-0.1 2,-1.6 -30,-0.1 -1,-0.1 -0.534 37.2-169.6 -73.7 89.4 -5.6 -1.2 -3.9 87 11 B T + 0 0 88 -2,-1.8 2,-0.2 -3,-0.0 -1,-0.1 -0.658 55.6 38.8 -87.5 83.5 -6.5 -3.3 -6.9 88 12 B G + 0 0 61 -2,-1.6 2,-0.3 0, 0.0 -3,-0.0 -0.433 55.7 148.5 147.6 144.5 -9.4 -1.5 -8.3 89 13 B G - 0 0 77 -2,-0.2 2,-0.4 2,-0.0 -2,-0.0 -0.920 25.0-141.7 176.5 162.5 -10.6 2.0 -8.8 90 14 B K - 0 0 198 -2,-0.3 0, 0.0 2,-0.0 0, 0.0 -0.993 15.3-135.0-143.4 135.0 -12.7 4.2 -11.0 91 15 B A - 0 0 91 -2,-0.4 2,-1.1 1,-0.0 -2,-0.0 -0.815 24.4-131.9 -89.7 122.2 -12.2 7.7 -12.2 92 16 B P + 0 0 135 0, 0.0 2,-0.3 0, 0.0 -1,-0.0 -0.662 56.0 124.8 -78.2 99.4 -15.4 9.8 -11.9 93 17 B R 0 0 204 -2,-1.1 -2,-0.0 1,-0.1 0, 0.0 -0.906 360.0 360.0-142.9 171.3 -15.8 11.5 -15.2 94 18 B Y 0 0 251 -2,-0.3 -1,-0.1 0, 0.0 0, 0.0 0.459 360.0 360.0-129.0 360.0 -18.4 11.8 -17.9