==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=11-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ELECTRON TRANSPORT 16-DEC-03 1RWJ . COMPND 2 MOLECULE: CYTOCHROME C FAMILY PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACTER SULFURREDUCENS; . AUTHOR P.R.POKKULURI,Y.Y.LONDER,N.E.C.DUKE,J.ERICKSON,M.PESSANHA, . 81 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6267.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 42 51.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 5 6.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 14 17.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 11 13.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A K > 0 0 120 0, 0.0 3,-1.7 0, 0.0 2,-0.2 0.000 360.0 360.0 360.0 161.1 28.5 -3.5 25.5 2 2 A G T 3 - 0 0 76 1,-0.2 0, 0.0 3,-0.0 0, 0.0 -0.450 360.0 -22.1 67.6-127.4 25.5 -5.2 27.1 3 3 A M T 3 S+ 0 0 124 -2,-0.2 -1,-0.2 2,-0.1 40,-0.0 0.378 103.3 119.4 -98.5 1.8 22.3 -3.1 27.0 4 4 A T < - 0 0 98 -3,-1.7 0, 0.0 1,-0.1 0, 0.0 -0.537 69.1-121.4 -72.0 126.9 24.2 0.2 26.7 5 5 A P - 0 0 63 0, 0.0 2,-0.1 0, 0.0 -1,-0.1 -0.528 25.2-125.4 -71.3 124.6 23.2 2.0 23.5 6 6 A P - 0 0 65 0, 0.0 17,-0.6 0, 0.0 18,-0.1 -0.449 16.3-123.1 -68.6 143.0 26.3 2.7 21.3 7 7 A K S S+ 0 0 157 1,-0.2 16,-1.5 16,-0.2 17,-1.1 0.901 99.2 15.7 -52.3 -40.5 26.7 6.3 20.4 8 8 A T E -A 22 0A 71 14,-0.2 2,-0.5 15,-0.1 14,-0.2 -1.000 68.8-158.1-139.2 135.8 26.6 5.2 16.8 9 9 A V E -A 21 0A 23 12,-2.8 12,-2.6 -2,-0.4 2,-0.3 -0.948 15.6-152.6-113.1 131.1 25.5 1.9 15.2 10 10 A N E -A 20 0A 102 -2,-0.5 2,-0.5 10,-0.2 10,-0.2 -0.777 6.2-154.8-106.8 149.8 26.8 1.0 11.8 11 11 A F E -A 19 0A 57 8,-2.2 8,-1.7 -2,-0.3 2,-0.2 -0.973 16.2-145.1-124.2 113.8 25.2 -1.1 9.1 12 12 A K + 0 0 138 -2,-0.5 2,-0.3 6,-0.2 5,-0.1 -0.557 30.7 151.2 -81.4 141.4 27.6 -2.8 6.6 13 13 A M - 0 0 70 -2,-0.2 2,-0.3 3,-0.2 5,-0.1 -0.980 40.8-104.4-165.0 155.4 26.6 -3.3 3.0 14 14 A K S S+ 0 0 205 -2,-0.3 2,-1.2 1,-0.1 3,-0.1 -0.624 91.0 8.3 -89.7 144.8 28.1 -3.5 -0.6 15 15 A G S S+ 0 0 91 -2,-0.3 2,-0.1 1,-0.0 -1,-0.1 -0.598 114.3 62.4 94.8 -75.1 27.9 -0.7 -3.1 16 16 A V S S- 0 0 71 -2,-1.2 -3,-0.2 1,-0.1 3,-0.1 -0.441 99.7 -87.3 -84.3 159.2 26.6 2.2 -1.1 17 17 A A - 0 0 48 63,-0.2 -1,-0.1 -2,-0.1 -3,-0.1 -0.379 58.3 -91.8 -63.9 143.4 28.4 3.7 1.8 18 18 A D - 0 0 55 1,-0.1 -6,-0.2 -5,-0.1 2,-0.1 -0.174 44.4-114.6 -56.2 149.7 27.5 2.0 5.1 19 19 A A E -A 11 0A 13 -8,-1.7 -8,-2.2 61,-0.2 2,-0.4 -0.459 26.6-155.9 -85.3 160.5 24.6 3.4 7.0 20 20 A A E -A 10 0A 35 59,-2.2 2,-0.4 -10,-0.2 -10,-0.2 -0.999 8.0-166.5-142.1 136.7 24.9 5.0 10.5 21 21 A F E -A 9 0A 46 -12,-2.6 -12,-2.8 -2,-0.4 2,-0.7 -0.986 13.0-147.4-123.4 129.9 22.4 5.5 13.3 22 22 A S E > -A 8 0A 40 -2,-0.4 4,-2.0 -14,-0.2 -14,-0.2 -0.856 15.1-176.7-103.0 114.8 23.0 7.9 16.2 23 23 A H H > S+ 0 0 23 -16,-1.5 4,-3.1 -2,-0.7 5,-0.2 0.904 87.8 61.5 -68.9 -40.1 21.6 6.9 19.6 24 24 A E H 4 S+ 0 0 137 -17,-1.1 4,-0.2 1,-0.2 -1,-0.2 0.910 108.7 41.2 -51.8 -47.4 23.0 10.2 20.9 25 25 A F H >4 S+ 0 0 135 -18,-0.3 3,-1.6 1,-0.2 4,-0.2 0.974 118.5 43.4 -67.0 -55.1 20.8 12.2 18.5 26 26 A H H >X S+ 0 0 44 -4,-2.0 4,-2.4 1,-0.3 3,-1.9 0.789 101.8 67.1 -64.2 -29.2 17.6 10.2 18.8 27 27 A L T 3< S+ 0 0 83 -4,-3.1 -1,-0.3 1,-0.3 -2,-0.2 0.599 86.7 73.0 -68.6 -7.3 17.8 9.8 22.6 28 28 A G T <4 S+ 0 0 68 -3,-1.6 -1,-0.3 -4,-0.2 -2,-0.2 0.684 116.1 17.6 -77.9 -16.4 17.2 13.6 22.7 29 29 A M T <4 S+ 0 0 115 -3,-1.9 2,-0.3 -4,-0.2 -2,-0.2 0.599 120.5 57.0-125.5 -24.0 13.6 12.9 21.7 30 30 A Y < - 0 0 69 -4,-2.4 2,-0.2 2,-0.0 -1,-0.2 -0.884 61.5-137.9-123.1 150.9 12.8 9.3 22.4 31 31 A K > - 0 0 160 -2,-0.3 3,-2.0 1,-0.1 4,-0.4 -0.574 41.1-100.4 -92.5 161.1 12.9 6.8 25.2 32 32 A C G >> S+ 0 0 75 1,-0.3 4,-3.0 -2,-0.2 3,-1.9 0.873 118.5 56.5 -48.1 -49.6 14.2 3.2 24.7 33 33 A N G 34 S+ 0 0 117 1,-0.3 -1,-0.3 2,-0.2 5,-0.3 0.510 89.2 74.0 -67.5 -4.6 10.7 1.6 24.4 34 34 A E G <4 S+ 0 0 92 -3,-2.0 -1,-0.3 1,-0.1 -2,-0.2 0.669 120.6 13.3 -81.1 -12.8 9.7 3.9 21.5 35 35 A C T <>>S+ 0 0 30 -3,-1.9 5,-2.5 -4,-0.4 4,-2.3 0.613 106.5 102.4-126.8 -36.7 12.1 1.8 19.3 36 36 A H B <5S-b 40 0B 34 -4,-3.0 -1,-0.3 1,-0.2 5,-0.1 -0.896 97.9 -13.1-105.5 130.7 13.0 -1.3 21.3 37 37 A T T 45S+ 0 0 104 3,-0.5 -1,-0.2 -2,-0.5 -4,-0.1 -0.980 129.3 61.9-100.7 1.4 11.7 -4.0 20.8 38 38 A K T 45S+ 0 0 190 -5,-0.3 -2,-0.2 1,-0.2 3,-0.1 0.864 125.5 14.5 -52.9 -42.7 8.8 -3.0 18.6 39 39 A L T <5S+ 0 0 40 -4,-2.3 2,-0.3 1,-0.3 20,-0.3 0.803 134.0 17.6-103.5 -38.9 11.1 -1.5 15.8 40 40 A F B S- 0 0 156 4,-0.0 3,-1.2 -40,-0.0 -2,-0.3 -0.959 86.5-122.2-147.8 122.8 21.1 -6.4 19.4 44 44 A A T 3 S+ 0 0 74 -2,-0.3 -2,-0.1 1,-0.2 -33,-0.0 -0.402 92.5 9.2 -69.0 140.8 22.6 -4.9 16.2 45 45 A G T 3 S+ 0 0 52 2,-0.2 -1,-0.2 -2,-0.1 3,-0.2 0.577 86.7 124.3 69.0 11.2 22.3 -6.8 13.0 46 46 A A S < S+ 0 0 67 -3,-1.2 2,-0.4 1,-0.3 -2,-0.1 0.889 82.6 19.1 -68.5 -39.8 19.8 -9.3 14.4 47 47 A K S S- 0 0 149 -4,-0.3 2,-0.4 -6,-0.1 -1,-0.3 -0.986 79.2-149.6-135.2 120.6 17.2 -8.6 11.8 48 48 A R - 0 0 138 -2,-0.4 2,-0.3 -3,-0.2 11,-0.0 -0.785 13.0-170.6 -96.6 131.7 18.1 -6.9 8.5 49 49 A F - 0 0 69 -2,-0.4 2,-0.2 9,-0.0 -2,-0.0 -0.841 12.1-135.8-117.4 157.2 15.6 -4.6 6.7 50 50 A T > - 0 0 75 -2,-0.3 4,-1.8 1,-0.1 5,-0.1 -0.519 30.0-105.2-104.5 173.0 15.8 -3.1 3.2 51 51 A M H > S+ 0 0 81 1,-0.2 4,-1.7 2,-0.2 5,-0.1 0.858 124.0 56.5 -64.9 -33.2 15.1 0.3 1.8 52 52 A A H > S+ 0 0 57 1,-0.2 4,-0.9 2,-0.2 -1,-0.2 0.884 104.1 52.1 -64.4 -39.3 11.9 -1.2 0.4 53 53 A D H >4>S+ 0 0 35 1,-0.2 5,-2.1 2,-0.2 3,-0.7 0.895 107.2 52.9 -63.4 -39.9 10.9 -2.4 3.9 54 54 A M H ><5S+ 0 0 26 -4,-1.8 3,-2.0 1,-0.3 -1,-0.2 0.865 101.4 59.3 -63.3 -35.4 11.4 1.2 5.1 55 55 A D H 3<5S+ 0 0 109 -4,-1.7 -1,-0.3 1,-0.3 -2,-0.2 0.787 104.5 52.6 -62.6 -26.2 9.1 2.4 2.4 56 56 A K T <<5S- 0 0 161 -4,-0.9 -1,-0.3 -3,-0.7 -2,-0.2 0.263 130.3 -95.1 -92.8 10.1 6.5 0.1 4.0 57 57 A G T < 5S+ 0 0 38 -3,-2.0 -3,-0.2 1,-0.3 2,-0.2 0.585 83.6 127.0 90.3 10.8 7.0 1.6 7.4 58 58 A K > < - 0 0 88 -5,-2.1 3,-1.6 3,-0.1 -1,-0.3 -0.572 66.8 -9.9 -98.1 164.0 9.5 -0.8 8.8 59 59 A S G > S- 0 0 11 -20,-0.3 3,-2.1 1,-0.3 4,-0.3 -0.182 138.3 -5.8 51.0-135.5 12.9 -0.1 10.4 60 60 A C G >> S+ 0 0 39 1,-0.3 4,-3.0 2,-0.2 3,-1.9 0.825 129.5 71.1 -57.1 -31.8 13.9 3.6 10.0 61 61 A G G <4 S+ 0 0 2 -3,-1.6 -1,-0.3 1,-0.3 -2,-0.2 0.572 74.2 82.0 -62.7 -10.3 10.8 4.0 7.8 62 62 A A G <4 S+ 0 0 26 -3,-2.1 -1,-0.3 -4,-0.2 -2,-0.2 0.795 120.0 5.9 -64.9 -25.8 8.6 3.8 10.8 63 63 A C T <4>S+ 0 0 37 -3,-1.9 2,-2.4 -4,-0.3 6,-1.2 0.627 117.4 76.2-123.8 -37.9 9.4 7.4 11.3 64 64 A H T <5 + 0 0 27 -4,-3.0 8,-1.8 1,-0.2 6,-0.1 -0.472 61.7 118.9 -80.5 71.0 11.4 8.5 8.3 65 65 A N T 5S- 0 0 69 -2,-2.4 6,-0.2 4,-0.4 -1,-0.2 0.200 91.7 -96.9-119.9 8.9 8.3 8.6 6.2 66 66 A G T 5S+ 0 0 50 3,-2.1 4,-0.2 -3,-0.3 -2,-0.1 0.386 117.1 58.2 88.5 -5.2 8.3 12.3 5.1 67 67 A K T 5S+ 0 0 198 -4,-0.4 3,-0.1 2,-0.3 -3,-0.1 0.685 111.8 28.8-121.9 -44.1 5.9 13.2 7.9 68 68 A D S - 0 0 38 -6,-0.2 3,-1.1 1,-0.1 -6,-0.3 -0.180 16.0-140.5 -56.4 141.4 11.7 10.4 4.1 72 72 A S T 3 S+ 0 0 20 -8,-1.8 -1,-0.1 1,-0.2 -17,-0.1 0.491 97.0 77.2 -80.2 -2.0 13.9 7.4 3.7 73 73 A A T 3 S+ 0 0 64 -9,-0.1 2,-0.2 -19,-0.1 -1,-0.2 0.512 105.7 20.8 -84.3 -5.7 13.2 7.6 -0.0 74 74 A S S < S+ 0 0 70 -3,-1.1 4,-0.0 1,-0.1 0, 0.0 -0.828 94.0 59.4-146.5-176.4 15.6 10.5 -0.4 75 75 A D >> + 0 0 82 -2,-0.2 3,-1.8 1,-0.1 4,-0.7 0.895 53.9 173.5 54.9 44.9 18.6 12.2 1.3 76 76 A C H >> S+ 0 0 88 1,-0.3 4,-2.4 2,-0.2 3,-1.1 0.877 71.4 61.3 -47.5 -46.0 20.7 9.0 1.0 77 77 A G H 34 S+ 0 0 51 1,-0.2 -1,-0.3 2,-0.2 -2,-0.1 0.736 90.6 67.4 -56.9 -27.6 23.7 10.8 2.3 78 78 A K H <4 S+ 0 0 124 -3,-1.8 -1,-0.2 1,-0.2 -2,-0.2 0.881 118.6 21.3 -63.0 -37.8 22.1 11.7 5.7 79 79 A C H << S+ 0 0 40 -3,-1.1 -59,-2.2 -4,-0.7 -2,-0.2 0.636 128.0 50.5-103.1 -19.9 22.0 8.0 6.7 80 80 A H < 0 0 34 -4,-2.4 -63,-0.2 -61,-0.2 -1,-0.2 -0.654 360.0 360.0-117.1 70.4 24.8 6.7 4.4 81 81 A P 0 0 114 0, 0.0 -3,-0.1 0, 0.0 -63,-0.0 -0.217 360.0 360.0 -65.9 360.0 27.6 9.3 5.1