==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=11-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 17-DEC-03 1RWU . COMPND 2 MOLECULE: HYPOTHETICAL UPF0250 PROTEIN YBED; . SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; . AUTHOR G.KOZLOV,C.H.ARROWSMITH,K.GEHRING,NORTHEAST STRUCTURAL . 87 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5153.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 57 65.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 19 21.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 13 14.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 19 21.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 147 0, 0.0 2,-0.2 0, 0.0 9,-0.1 0.000 360.0 360.0 360.0 153.5 5.4 10.4 -22.3 2 2 A K + 0 0 147 1,-0.1 6,-0.3 7,-0.1 7,-0.0 -0.703 360.0 127.6-144.9 89.5 7.0 7.8 -24.6 3 3 A T - 0 0 82 4,-3.2 5,-0.2 -2,-0.2 -1,-0.1 0.456 61.8-130.4-120.6 -5.7 9.6 9.0 -27.2 4 4 A K S S+ 0 0 121 3,-1.0 4,-0.1 1,-0.1 -2,-0.0 0.911 96.1 54.5 56.4 41.9 12.5 6.6 -26.5 5 5 A L S S+ 0 0 107 2,-0.4 67,-0.3 67,-0.0 -1,-0.1 0.201 120.4 10.2-163.8 -55.2 14.9 9.6 -26.3 6 6 A N S S+ 0 0 47 1,-0.3 2,-0.3 62,-0.1 60,-0.2 0.625 130.7 12.9-113.3 -21.2 13.9 12.3 -23.7 7 7 A E + 0 0 9 58,-0.1 -4,-3.2 1,-0.1 -3,-1.0 -0.976 59.6 126.7-157.1 141.7 11.0 10.5 -21.9 8 8 A L S S+ 0 0 56 -2,-0.3 58,-0.1 57,-0.3 -1,-0.1 0.267 83.9 33.8-158.2 -55.9 9.6 7.0 -21.6 9 9 A L S S- 0 0 83 56,-0.2 57,-0.1 2,-0.1 -7,-0.1 0.639 87.8-140.4 -89.0 -14.0 9.2 5.7 -18.0 10 10 A E + 0 0 88 1,-0.2 56,-0.2 55,-0.2 55,-0.1 0.949 55.7 131.3 55.0 52.2 8.4 9.2 -16.6 11 11 A F - 0 0 143 54,-2.4 2,-0.8 53,-0.1 -1,-0.2 -0.915 55.1-137.8-139.9 111.4 10.4 8.7 -13.4 12 12 A P - 0 0 64 0, 0.0 53,-0.3 0, 0.0 52,-0.2 -0.533 30.5-177.6 -69.9 107.5 12.9 11.3 -12.2 13 13 A T - 0 0 46 51,-1.8 2,-0.5 -2,-0.8 51,-0.4 -0.852 33.8-104.9-110.4 146.0 16.0 9.4 -11.1 14 14 A P - 0 0 105 0, 0.0 2,-0.8 0, 0.0 49,-0.2 -0.527 33.5-162.3 -69.4 114.6 19.2 10.9 -9.5 15 15 A F E -A 62 0A 23 47,-3.5 2,-1.5 -2,-0.5 47,-0.9 -0.817 6.0-156.0-102.5 101.1 21.9 10.8 -12.2 16 16 A T E +A 61 0A 117 -2,-0.8 2,-0.3 45,-0.2 45,-0.2 -0.567 31.7 165.8 -75.5 93.0 25.4 11.2 -10.6 17 17 A Y E -A 60 0A 35 43,-1.8 43,-0.9 -2,-1.5 2,-0.4 -0.758 29.5-154.7-110.8 159.2 27.3 12.6 -13.6 18 18 A K E -A 59 0A 38 41,-0.3 2,-1.3 -2,-0.3 69,-0.6 -0.864 5.3-156.6-134.8 101.3 30.7 14.4 -13.9 19 19 A V E -AB 58 86A 4 39,-0.8 39,-2.0 -2,-0.4 2,-0.3 -0.608 23.0-179.2 -79.7 95.6 31.2 16.8 -16.8 20 20 A M E +AB 57 85A 55 -2,-1.3 65,-1.2 65,-0.6 2,-0.3 -0.760 29.6 84.5 -97.7 142.0 35.0 16.7 -17.1 21 21 A G E S-AB 56 84A 5 35,-1.7 35,-1.8 -2,-0.3 63,-0.2 -0.961 78.7 -7.3 166.4-147.7 36.8 18.8 -19.8 22 22 A Q E S-A 55 0A 43 61,-1.8 2,-0.9 -2,-0.3 33,-0.3 -0.442 77.8 -97.2 -75.8 151.1 38.1 22.4 -20.2 23 23 A A - 0 0 30 31,-3.5 -1,-0.1 -2,-0.1 34,-0.1 -0.538 50.4-178.6 -70.6 105.0 37.2 25.0 -17.5 24 24 A L > - 0 0 41 -2,-0.9 3,-0.8 1,-0.1 4,-0.5 -0.922 26.3-155.7-111.1 129.7 34.2 26.8 -19.0 25 25 A P T 3 S+ 0 0 105 0, 0.0 4,-0.5 0, 0.0 3,-0.3 0.820 98.8 52.2 -70.5 -30.5 32.5 29.7 -17.1 26 26 A E T 3> S+ 0 0 70 1,-0.2 4,-2.7 2,-0.1 5,-0.3 0.519 86.0 89.8 -83.6 -2.8 29.2 29.1 -19.0 27 27 A L H <> S+ 0 0 15 -3,-0.8 4,-2.8 1,-0.2 -1,-0.2 0.969 89.7 43.5 -58.5 -52.6 29.3 25.4 -18.0 28 28 A V H > S+ 0 0 58 -4,-0.5 4,-2.0 -3,-0.3 5,-0.3 0.868 113.5 53.9 -62.2 -33.2 27.4 26.0 -14.7 29 29 A D H > S+ 0 0 88 -4,-0.5 4,-1.7 2,-0.2 -2,-0.2 0.948 114.2 39.2 -67.5 -46.3 24.9 28.3 -16.6 30 30 A Q H X S+ 0 0 29 -4,-2.7 4,-3.1 2,-0.2 5,-0.4 0.871 112.4 58.6 -72.2 -34.3 24.1 25.6 -19.2 31 31 A V H X S+ 0 0 0 -4,-2.8 4,-1.9 -5,-0.3 5,-0.2 0.970 113.8 35.5 -60.4 -53.2 24.1 22.8 -16.6 32 32 A V H X S+ 0 0 39 -4,-2.0 4,-1.4 -5,-0.2 5,-0.2 0.849 120.5 50.7 -70.8 -31.5 21.3 24.4 -14.5 33 33 A E H X S+ 0 0 63 -4,-1.7 4,-1.9 -5,-0.3 -2,-0.2 0.940 116.4 38.0 -72.7 -46.3 19.5 25.8 -17.6 34 34 A V H X S+ 0 0 0 -4,-3.1 4,-1.1 1,-0.2 5,-0.3 0.841 117.2 51.5 -75.5 -30.3 19.4 22.5 -19.5 35 35 A V H X S+ 0 0 0 -4,-1.9 4,-2.1 -5,-0.4 -1,-0.2 0.849 113.5 44.6 -75.2 -30.8 18.8 20.4 -16.4 36 36 A Q H < S+ 0 0 81 -4,-1.4 -2,-0.2 -5,-0.2 -1,-0.2 0.908 110.0 53.1 -79.0 -42.0 15.8 22.6 -15.3 37 37 A R H < S+ 0 0 173 -4,-1.9 -2,-0.2 -5,-0.2 -1,-0.2 0.838 123.6 29.6 -62.9 -30.1 14.2 22.8 -18.8 38 38 A H H < S+ 0 0 63 -4,-1.1 27,-0.2 1,-0.2 -2,-0.2 0.839 129.8 31.2 -97.5 -41.1 14.2 19.0 -19.1 39 39 A A S < S- 0 0 2 -4,-2.1 -1,-0.2 -5,-0.3 25,-0.1 -0.928 87.5-108.2-120.8 145.6 13.9 18.0 -15.4 40 40 A P S S+ 0 0 87 0, 0.0 23,-0.1 0, 0.0 -3,-0.1 -0.392 83.8 40.6 -69.0 142.5 12.1 19.8 -12.6 41 41 A G S S- 0 0 36 -5,-0.1 2,-0.4 -2,-0.1 -2,-0.2 0.076 89.0 -89.5 98.1 147.8 14.3 21.5 -9.9 42 42 A D - 0 0 100 -6,-0.1 2,-0.3 20,-0.1 -10,-0.1 -0.740 44.7-176.6 -94.5 139.9 17.6 23.4 -10.4 43 43 A Y - 0 0 59 -2,-0.4 -8,-0.1 -11,-0.2 -7,-0.1 -0.881 7.5-156.6-131.8 164.4 20.9 21.5 -10.4 44 44 A T - 0 0 86 -2,-0.3 17,-1.4 15,-0.1 2,-0.6 -0.971 19.9-118.8-142.8 158.1 24.7 22.4 -10.6 45 45 A P E -C 60 0A 8 0, 0.0 2,-1.2 0, 0.0 15,-0.3 -0.845 23.6-139.3 -96.7 120.6 28.0 21.0 -11.5 46 46 A T E -C 59 0A 81 13,-2.8 13,-1.7 -2,-0.6 2,-0.2 -0.649 24.0-154.1 -81.4 99.5 30.6 20.8 -8.7 47 47 A V E -C 58 0A 71 -2,-1.2 11,-0.3 11,-0.3 -27,-0.1 -0.475 15.2-177.6 -75.9 144.4 33.9 21.8 -10.5 48 48 A K E -C 57 0A 79 9,-1.5 9,-2.1 -2,-0.2 2,-1.1 -0.995 37.2-102.3-142.4 147.3 37.2 20.6 -9.0 49 49 A P E +C 56 0A 108 0, 0.0 7,-0.1 0, 0.0 4,-0.1 -0.534 48.8 161.1 -70.7 97.7 40.9 21.2 -10.0 50 50 A S S S- 0 0 80 -2,-1.1 6,-0.1 5,-0.5 3,-0.1 0.923 76.3 -19.2 -86.3 -50.0 41.7 17.9 -11.7 51 51 A S S S- 0 0 104 4,-0.8 2,-0.3 1,-0.5 5,-0.1 0.666 120.8 -20.5-125.4 -52.2 44.9 18.8 -13.7 52 52 A K - 0 0 160 3,-0.9 -1,-0.5 1,-0.1 -2,-0.3 -0.901 67.5 -90.7-150.3 179.6 45.2 22.6 -14.1 53 53 A G S S+ 0 0 57 -2,-0.3 -30,-0.1 1,-0.2 -1,-0.1 0.830 125.0 54.9 -68.8 -27.9 43.2 25.9 -14.1 54 54 A N S S+ 0 0 109 1,-0.1 -31,-3.5 -32,-0.1 2,-0.5 0.843 109.5 49.9 -74.4 -31.7 42.5 25.4 -17.8 55 55 A Y E S+A 22 0A 75 -33,-0.3 -3,-0.9 -3,-0.1 -4,-0.8 -0.921 71.1 174.8-111.3 123.8 41.1 21.9 -17.4 56 56 A H E -AC 21 49A 42 -35,-1.8 -35,-1.7 -2,-0.5 2,-0.6 -0.975 21.6-150.0-130.3 142.3 38.4 21.4 -14.7 57 57 A S E -AC 20 48A 4 -9,-2.1 -9,-1.5 -2,-0.4 2,-0.3 -0.924 20.6-170.6-110.5 117.2 36.2 18.3 -13.8 58 58 A V E -AC 19 47A 4 -39,-2.0 2,-0.8 -2,-0.6 -39,-0.8 -0.822 20.6-136.9-110.1 150.8 32.8 19.1 -12.5 59 59 A S E -AC 18 46A 33 -13,-1.7 -13,-2.8 -2,-0.3 2,-0.5 -0.864 23.9-163.1-104.4 104.6 30.2 16.8 -10.9 60 60 A I E -AC 17 45A 3 -43,-0.9 -43,-1.8 -2,-0.8 2,-0.4 -0.752 6.0-149.9 -93.1 130.7 26.7 17.6 -12.3 61 61 A T E +A 16 0A 72 -17,-1.4 2,-0.3 -2,-0.5 -45,-0.2 -0.799 22.5 173.2 -96.4 133.9 23.6 16.4 -10.4 62 62 A I E -A 15 0A 2 -47,-0.9 -47,-3.5 -2,-0.4 2,-0.3 -0.994 29.7-161.0-144.1 139.4 20.5 15.7 -12.6 63 63 A N + 0 0 19 -2,-0.3 2,-0.2 -49,-0.2 -2,-0.0 -0.420 27.1 174.0-112.6 57.2 17.0 14.2 -11.9 64 64 A A - 0 0 0 -51,-0.4 -51,-1.8 -2,-0.3 -25,-0.1 -0.449 31.8-142.3 -67.2 130.7 16.1 13.3 -15.6 65 65 A T S S+ 0 0 15 -53,-0.3 -54,-2.4 -27,-0.2 2,-0.3 0.601 85.9 49.6 -70.1 -7.6 12.8 11.4 -15.7 66 66 A H S > S- 0 0 3 -60,-0.2 4,-0.9 -56,-0.2 -53,-0.1 -0.914 80.6-128.0-129.8 157.9 14.3 9.3 -18.5 67 67 A I H > S+ 0 0 86 -2,-0.3 4,-0.5 1,-0.2 3,-0.5 0.962 111.4 41.6 -69.7 -51.4 17.6 7.4 -19.0 68 68 A E H > S+ 0 0 51 1,-0.2 4,-1.7 2,-0.2 3,-0.2 0.682 100.1 76.9 -71.6 -14.7 18.5 9.0 -22.4 69 69 A Q H > S+ 0 0 2 1,-0.2 4,-2.2 2,-0.2 -1,-0.2 0.949 90.9 52.1 -62.1 -46.0 17.3 12.4 -21.1 70 70 A V H X S+ 0 0 0 -4,-0.9 4,-1.8 -3,-0.5 -1,-0.2 0.827 105.4 58.5 -60.7 -27.2 20.5 12.9 -19.0 71 71 A E H X S+ 0 0 79 -4,-0.5 4,-1.9 -3,-0.2 -1,-0.2 0.967 107.9 42.7 -67.8 -50.2 22.6 12.2 -22.2 72 72 A T H X S+ 0 0 31 -4,-1.7 4,-2.4 -67,-0.3 -2,-0.2 0.905 110.8 57.7 -63.5 -37.3 21.0 15.0 -24.2 73 73 A L H X S+ 0 0 0 -4,-2.2 4,-1.9 1,-0.2 5,-0.3 0.918 105.0 51.1 -60.0 -40.0 21.4 17.3 -21.2 74 74 A Y H X S+ 0 0 53 -4,-1.8 4,-3.1 1,-0.2 -1,-0.2 0.949 109.5 49.5 -63.0 -45.8 25.1 16.6 -21.1 75 75 A E H < S+ 0 0 92 -4,-1.9 -1,-0.2 1,-0.2 -2,-0.2 0.896 107.9 55.3 -60.7 -37.7 25.4 17.5 -24.8 76 76 A E H < S+ 0 0 42 -4,-2.4 3,-0.4 1,-0.2 -1,-0.2 0.916 117.5 33.8 -63.3 -41.4 23.5 20.8 -24.2 77 77 A L H < S+ 0 0 1 -4,-1.9 2,-0.5 1,-0.2 3,-0.3 0.796 121.6 49.7 -84.5 -28.6 26.0 21.9 -21.5 78 78 A G S < S+ 0 0 1 -4,-3.1 -1,-0.2 -5,-0.3 6,-0.1 -0.417 72.4 113.0-107.1 59.0 29.0 20.3 -23.2 79 79 A K + 0 0 68 -2,-0.5 -1,-0.2 -3,-0.4 -3,-0.1 0.355 41.4 123.2-107.1 4.2 28.6 21.7 -26.7 80 80 A I S S- 0 0 35 -3,-0.3 4,-0.2 1,-0.1 -56,-0.0 -0.269 73.3-119.9 -63.4 152.6 31.7 23.9 -26.6 81 81 A D S S+ 0 0 162 2,-0.1 -1,-0.1 0, 0.0 3,-0.1 0.662 92.3 84.6 -69.7 -11.9 34.3 23.3 -29.4 82 82 A I S S- 0 0 77 1,-0.1 2,-0.5 -60,-0.0 0, 0.0 -0.268 106.2 -63.5 -82.9 175.2 36.9 22.5 -26.7 83 83 A V + 0 0 89 -62,-0.0 -61,-1.8 -2,-0.0 2,-0.4 -0.433 64.0 174.1 -63.2 112.0 37.3 19.0 -25.1 84 84 A R E +B 21 0A 99 -2,-0.5 2,-0.3 -63,-0.2 -63,-0.2 -0.959 3.3 159.1-122.0 136.8 34.0 18.3 -23.2 85 85 A M E -B 20 0A 112 -65,-1.2 -65,-0.6 -2,-0.4 2,-0.3 -0.986 19.5-156.2-151.3 161.6 33.1 15.0 -21.5 86 86 A V E B 19 0A 36 -67,-0.3 -67,-0.3 -2,-0.3 -27,-0.1 -0.985 360.0 360.0-141.7 153.0 30.7 13.5 -18.9 87 87 A L 0 0 118 -69,-0.6 -70,-0.1 -2,-0.3 -1,-0.1 0.896 360.0 360.0 -93.4 360.0 30.7 10.5 -16.6