==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=11-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION FACTOR 12-JUN-98 1RXR . COMPND 2 MOLECULE: RETINOIC ACID RECEPTOR-ALPHA; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR S.M.A.HOLMBECK,M.P.FOSTER,D.R.CASIMIRO,D.S.SEM,H.J.DYSON, . 83 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5688.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 54 65.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 6 7.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 11 13.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 12.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 23 27.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 130 A F 0 0 147 0, 0.0 6,-0.1 0, 0.0 20,-0.0 0.000 360.0 360.0 360.0 169.1 -5.5 0.7 15.1 2 131 A T + 0 0 105 1,-0.1 2,-0.7 2,-0.1 0, 0.0 0.977 360.0 48.2 -49.1 -67.0 -5.4 -0.9 18.6 3 132 A K S S- 0 0 163 1,-0.1 2,-2.7 9,-0.0 -1,-0.1 -0.693 108.1-122.9 -73.3 112.4 -5.6 -4.4 17.0 4 133 A H + 0 0 93 -2,-0.7 9,-2.2 9,-0.1 2,-0.1 -0.328 47.2 164.4 -69.1 70.9 -2.9 -3.8 14.3 5 134 A I B -A 12 0A 73 -2,-2.7 2,-0.5 7,-0.2 7,-0.2 -0.500 55.0 -86.8 -77.3 154.0 -4.9 -4.6 11.2 6 135 A C > - 0 0 1 5,-2.9 4,-2.7 1,-0.2 16,-0.3 -0.561 34.8-137.6 -67.1 117.1 -3.3 -3.4 7.9 7 136 A A T 4 S+ 0 0 34 14,-2.7 -1,-0.2 -2,-0.5 15,-0.1 0.753 98.8 39.8 -44.7 -34.8 -4.5 0.2 7.6 8 137 A I T 4 S+ 0 0 10 13,-0.3 -1,-0.2 1,-0.1 14,-0.1 0.974 133.5 9.3 -80.6 -73.6 -5.1 -0.5 3.9 9 138 A C T 4 S- 0 0 3 43,-0.1 -2,-0.2 44,-0.0 45,-0.1 0.388 91.9-117.2-100.0 0.6 -6.6 -4.0 3.4 10 139 A G < + 0 0 31 -4,-2.7 -3,-0.1 1,-0.2 42,-0.1 0.554 65.4 142.7 75.6 8.2 -7.4 -5.0 7.0 11 140 A D - 0 0 18 1,-0.1 -5,-2.9 -5,-0.1 2,-0.4 -0.176 67.9 -77.5 -68.1 171.1 -5.0 -8.0 6.8 12 141 A R B -A 5 0A 160 -7,-0.2 12,-0.3 1,-0.1 -7,-0.2 -0.597 55.3-128.6 -69.9 125.9 -2.9 -9.0 9.9 13 142 A S - 0 0 15 -9,-2.2 10,-0.3 -2,-0.4 3,-0.1 -0.488 19.8-165.3 -74.7 150.6 -0.1 -6.4 10.1 14 143 A S S S- 0 0 61 8,-2.5 2,-0.3 1,-0.4 9,-0.2 0.700 72.3 -30.0 -98.0 -31.4 3.5 -7.6 10.5 15 144 A G E S-B 22 0B 27 7,-1.8 7,-2.6 5,-0.1 2,-2.0 -0.977 75.7 -72.7-171.3 174.7 4.7 -4.1 11.4 16 145 A K E > -B 21 0B 129 -2,-0.3 3,-1.9 5,-0.3 5,-0.3 -0.549 56.2-163.8 -81.1 76.6 4.2 -0.3 11.1 17 146 A H E > S-B 20 0B 18 -2,-2.0 3,-2.1 3,-0.9 55,-0.1 -0.466 74.8 -4.0 -70.3 128.6 5.5 -0.2 7.5 18 147 A Y T 3 S- 0 0 14 1,-0.3 54,-2.8 -2,-0.2 -1,-0.3 0.830 137.2 -55.8 54.8 34.8 6.3 3.4 6.5 19 148 A G T < S+ 0 0 42 -3,-1.9 2,-0.4 52,-0.2 -1,-0.3 0.452 122.2 96.9 80.7 4.9 4.9 4.4 10.0 20 149 A V E < S-B 17 0B 24 -3,-2.1 -3,-0.9 -5,-0.1 -1,-0.1 -0.991 87.3 -97.9-130.9 133.9 1.5 2.7 9.5 21 150 A Y E +B 16 0B 69 -2,-0.4 -14,-2.7 -5,-0.3 -13,-0.3 -0.243 63.4 160.4 -48.8 116.7 0.3 -0.8 10.6 22 151 A S E -B 15 0B 0 -7,-2.6 -8,-2.5 -16,-0.3 -7,-1.8 -0.956 34.8-121.6-147.3 160.1 0.7 -2.9 7.5 23 152 A C > - 0 0 1 -10,-0.3 4,-2.9 -2,-0.3 -10,-0.1 -0.570 37.8 -96.8-105.0 165.4 1.1 -6.5 6.1 24 153 A E H > S+ 0 0 106 -12,-0.3 4,-2.0 2,-0.2 5,-0.3 0.855 121.4 51.5 -48.8 -49.3 3.8 -8.3 4.2 25 154 A G H > S+ 0 0 36 1,-0.2 4,-3.0 2,-0.2 -1,-0.2 0.962 114.7 43.1 -55.6 -52.8 2.1 -7.8 0.8 26 155 A C H > S+ 0 0 2 2,-0.2 4,-2.9 1,-0.2 5,-0.4 0.884 108.7 60.1 -60.7 -43.6 1.8 -4.1 1.4 27 156 A K H X S+ 0 0 77 -4,-2.9 4,-1.9 1,-0.2 -1,-0.2 0.951 117.1 30.1 -45.4 -65.2 5.3 -3.8 2.8 28 157 A G H X S+ 0 0 27 -4,-2.0 4,-3.2 2,-0.2 5,-0.2 0.919 119.3 54.5 -64.7 -50.7 6.9 -5.1 -0.4 29 158 A F H X S+ 0 0 5 -4,-3.0 4,-2.9 -5,-0.3 5,-0.2 0.921 111.6 43.5 -52.1 -53.2 4.3 -3.7 -2.8 30 159 A F H X S+ 0 0 3 -4,-2.9 4,-3.0 2,-0.2 5,-0.3 0.948 114.2 51.6 -60.7 -47.5 4.6 -0.1 -1.5 31 160 A K H X S+ 0 0 53 -4,-1.9 4,-3.1 -5,-0.4 5,-0.3 0.947 113.4 44.3 -53.1 -54.6 8.4 -0.4 -1.5 32 161 A R H X S+ 0 0 128 -4,-3.2 4,-2.8 1,-0.2 5,-0.3 0.953 115.0 48.4 -51.5 -59.9 8.4 -1.6 -5.1 33 162 A T H X>S+ 0 0 0 -4,-2.9 5,-2.5 -5,-0.2 4,-1.6 0.894 116.9 41.2 -50.1 -52.2 5.9 1.0 -6.3 34 163 A V H <5S+ 0 0 7 -4,-3.0 -1,-0.2 3,-0.2 -2,-0.2 0.938 114.4 50.5 -66.8 -49.5 7.7 3.9 -4.6 35 164 A R H <5S+ 0 0 59 -4,-3.1 -2,-0.2 -5,-0.3 -1,-0.2 0.895 120.4 36.6 -55.4 -44.0 11.2 2.8 -5.5 36 165 A K H <5S- 0 0 164 -4,-2.8 -1,-0.3 -5,-0.3 -2,-0.2 0.725 107.3-133.9 -75.4 -28.0 10.2 2.4 -9.2 37 166 A D T <5 + 0 0 105 -4,-1.6 -3,-0.2 -5,-0.3 -4,-0.1 0.912 46.2 168.3 67.8 50.0 7.9 5.5 -8.8 38 167 A L < - 0 0 73 -5,-2.5 2,-0.3 -6,-0.2 -1,-0.1 -0.356 29.8-157.8 -89.8 169.6 5.0 3.7 -10.5 39 168 A T - 0 0 114 -2,-0.1 2,-0.2 2,-0.0 21,-0.1 -0.913 15.5-176.4-140.2 154.3 1.2 4.4 -10.9 40 169 A Y - 0 0 44 -2,-0.3 2,-0.3 20,-0.1 0, 0.0 -0.699 15.2-135.9-140.6-169.8 -1.5 1.8 -11.7 41 170 A T - 0 0 111 -2,-0.2 19,-0.4 2,-0.0 2,-0.3 -0.941 11.0-150.5-150.8 161.2 -5.2 1.5 -12.4 42 171 A C - 0 0 17 2,-0.4 2,-1.6 -2,-0.3 16,-0.1 -0.929 32.3-109.2-135.1 156.6 -8.0 -0.9 -11.2 43 172 A R S S+ 0 0 209 -2,-0.3 2,-0.3 2,-0.0 15,-0.0 -0.373 100.5 62.3 -85.4 56.7 -11.3 -2.3 -12.8 44 173 A D S S- 0 0 85 -2,-1.6 -2,-0.4 4,-0.0 4,-0.1 -0.898 97.5 -82.5-160.2 175.2 -13.3 -0.1 -10.4 45 174 A N - 0 0 123 -2,-0.3 3,-0.3 2,-0.2 -2,-0.0 -0.279 54.5 -92.1 -79.3 175.5 -13.6 3.6 -9.7 46 175 A K S S+ 0 0 142 1,-0.3 2,-2.0 -2,-0.1 -1,-0.1 0.890 125.7 67.4 -56.5 -36.6 -11.1 5.4 -7.5 47 176 A D S S+ 0 0 123 2,-0.1 -1,-0.3 3,-0.0 -2,-0.2 -0.347 79.2 172.4 -80.9 56.5 -13.4 4.6 -4.6 48 177 A C - 0 0 15 -2,-2.0 2,-2.0 -3,-0.3 -4,-0.0 -0.441 45.4-106.2 -69.8 141.4 -12.8 0.9 -4.9 49 178 A L - 0 0 120 -2,-0.1 2,-0.5 4,-0.0 5,-0.1 -0.497 43.6-167.0 -71.7 82.0 -14.3 -1.3 -2.2 50 179 A I + 0 0 23 -2,-2.0 2,-0.3 3,-0.1 5,-0.0 -0.652 30.2 124.6 -75.7 122.6 -11.0 -2.1 -0.3 51 180 A D S > S- 0 0 86 -2,-0.5 3,-2.3 4,-0.0 -41,-0.1 -0.890 80.5 -67.0-160.6 177.1 -11.5 -4.9 2.2 52 181 A K T 3 S+ 0 0 105 1,-0.3 -43,-0.1 -2,-0.3 -42,-0.1 0.792 127.7 66.1 -40.6 -42.8 -9.8 -8.4 2.9 53 182 A R T 3 S+ 0 0 128 1,-0.2 2,-1.5 -4,-0.1 -1,-0.3 0.808 82.9 80.5 -50.8 -40.7 -11.3 -9.5 -0.4 54 183 A Q S < S- 0 0 13 -3,-2.3 -1,-0.2 -5,-0.1 -4,-0.0 -0.596 72.0-168.7 -78.6 89.0 -9.0 -7.1 -2.4 55 184 A R > - 0 0 102 -2,-1.5 3,-2.7 1,-0.1 7,-0.1 -0.093 48.1 -76.8 -67.8 176.0 -5.8 -9.0 -2.4 56 185 A N T 3 S+ 0 0 37 1,-0.3 3,-0.4 2,-0.1 -1,-0.1 0.627 121.4 84.9 -58.4 -8.9 -2.5 -7.3 -3.5 57 186 A R T 3 S+ 0 0 162 1,-0.3 2,-1.9 2,-0.1 3,-0.3 0.866 76.2 72.5 -53.1 -36.5 -3.8 -7.7 -7.1 58 187 A C <> + 0 0 4 -3,-2.7 4,-2.6 1,-0.2 -1,-0.3 -0.245 64.1 152.1 -80.5 51.2 -5.7 -4.4 -6.3 59 188 A Q H > + 0 0 51 -2,-1.9 4,-3.0 -3,-0.4 -1,-0.2 0.894 62.8 52.2 -46.4 -61.0 -2.3 -2.5 -6.5 60 189 A Y H > S+ 0 0 39 -19,-0.4 4,-3.0 -3,-0.3 -1,-0.2 0.904 114.1 41.6 -47.7 -54.5 -3.7 0.9 -7.5 61 190 A C H > S+ 0 0 0 2,-0.2 4,-3.0 1,-0.2 -1,-0.2 0.905 113.1 52.5 -68.2 -40.5 -6.3 1.1 -4.8 62 191 A R H X S+ 0 0 2 -4,-2.6 4,-2.9 2,-0.2 -1,-0.2 0.932 112.6 47.4 -58.0 -43.6 -3.9 -0.2 -2.1 63 192 A Y H X S+ 0 0 15 -4,-3.0 4,-2.7 -5,-0.2 -2,-0.2 0.951 111.1 50.1 -61.9 -50.5 -1.5 2.5 -3.2 64 193 A Q H X S+ 0 0 47 -4,-3.0 4,-3.0 2,-0.2 -2,-0.2 0.935 112.7 47.5 -51.4 -52.0 -4.2 5.2 -3.1 65 194 A K H X S+ 0 0 65 -4,-3.0 4,-2.8 2,-0.2 5,-0.4 0.947 110.4 51.5 -56.2 -51.7 -5.2 4.0 0.4 66 195 A A H X>S+ 0 0 2 -4,-2.9 5,-2.5 1,-0.2 4,-2.1 0.909 114.5 43.7 -51.1 -46.4 -1.5 4.0 1.5 67 196 A L H <5S+ 0 0 78 -4,-2.7 -1,-0.2 3,-0.2 -2,-0.2 0.896 110.1 56.5 -66.8 -41.6 -1.1 7.6 0.2 68 197 A A H <5S+ 0 0 84 -4,-3.0 -2,-0.2 -5,-0.2 -1,-0.2 0.924 113.0 39.5 -57.8 -49.2 -4.5 8.6 1.7 69 198 A M H <5S- 0 0 79 -4,-2.8 -1,-0.2 -5,-0.1 -2,-0.2 0.893 120.0-117.9 -67.0 -37.8 -3.4 7.6 5.2 70 199 A G T <5 - 0 0 30 -4,-2.1 -3,-0.2 -5,-0.4 -2,-0.1 0.853 30.0-160.3 100.8 54.4 0.0 9.0 4.4 71 200 A M < - 0 0 8 -5,-2.5 2,-2.6 1,-0.1 -52,-0.2 -0.386 39.1-100.8 -59.2 138.4 2.5 6.2 4.5 72 201 A K >> - 0 0 121 -54,-2.8 3,-1.7 1,-0.2 4,-0.5 -0.399 46.8-178.5 -69.9 73.8 6.0 7.7 4.9 73 202 A R G >4 S+ 0 0 79 -2,-2.6 3,-2.0 1,-0.3 4,-0.4 0.838 75.2 61.5 -39.0 -53.0 6.9 7.3 1.2 74 203 A E G >4 S+ 0 0 174 1,-0.3 3,-1.9 2,-0.2 -1,-0.3 0.832 91.6 66.4 -47.9 -41.7 10.4 8.8 1.7 75 204 A A G X4 S+ 0 0 53 -3,-1.7 3,-2.2 1,-0.3 -1,-0.3 0.787 85.7 71.7 -56.9 -27.6 11.3 6.0 4.2 76 205 A V G X< S+ 0 0 1 -3,-2.0 3,-0.6 -4,-0.5 4,-0.3 0.869 86.5 66.1 -54.4 -35.7 11.1 3.5 1.2 77 206 A Q G <> + 0 0 52 -3,-1.9 4,-0.7 -4,-0.4 -1,-0.3 0.358 69.8 107.7 -71.2 8.3 14.4 5.1 0.0 78 207 A E G X4 S+ 0 0 149 -3,-2.2 3,-1.9 1,-0.2 -1,-0.2 0.959 85.2 37.1 -49.4 -62.6 16.2 3.7 3.1 79 208 A E T <4 S+ 0 0 118 -3,-0.6 -1,-0.2 1,-0.3 -2,-0.1 0.737 107.8 68.1 -65.6 -20.4 18.1 1.1 1.1 80 209 A R T 34 S+ 0 0 122 -4,-0.3 2,-2.6 1,-0.2 -1,-0.3 0.637 72.1 96.2 -73.5 -12.5 18.5 3.6 -1.7 81 210 A Q << + 0 0 141 -3,-1.9 2,-2.6 -4,-0.7 -1,-0.2 -0.350 53.3 171.8 -75.4 63.0 20.8 5.6 0.6 82 211 A R 0 0 214 -2,-2.6 -1,-0.1 1,-0.1 -2,-0.1 -0.376 360.0 360.0 -74.1 64.5 23.9 4.0 -1.1 83 212 A G 0 0 118 -2,-2.6 -1,-0.1 0, 0.0 -2,-0.1 -0.282 360.0 360.0 -54.8 360.0 26.3 6.3 0.7