==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=11-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 22-DEC-03 1RYK . COMPND 2 MOLECULE: PROTEIN YJBJ; . SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; . AUTHOR A.PINEDA-LUCENA,J.LIAO,B.WU,A.YEE,J.R.CORT,M.A.KENNEDY, . 69 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4704.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 51 73.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 5.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 10.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 37 53.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 205 0, 0.0 3,-0.1 0, 0.0 2,-0.0 0.000 360.0 360.0 360.0 135.9 0.6 -10.8 17.9 2 2 A N - 0 0 154 1,-0.1 2,-0.2 0, 0.0 67,-0.0 -0.312 360.0 -79.6 -69.8 159.4 2.2 -7.4 18.3 3 3 A K - 0 0 93 1,-0.1 -1,-0.1 -2,-0.0 66,-0.1 -0.441 53.9-125.0 -64.4 123.8 2.8 -5.2 15.3 4 4 A D - 0 0 69 65,-4.0 -1,-0.1 -2,-0.2 2,-0.1 -0.158 34.5 -81.3 -69.4 165.1 5.9 -6.5 13.4 5 5 A E - 0 0 148 1,-0.1 4,-0.2 2,-0.1 -1,-0.1 -0.356 25.1-137.6 -72.3 145.3 8.8 -4.3 12.6 6 6 A A S S+ 0 0 43 -3,-0.1 2,-0.5 3,-0.1 -1,-0.1 -0.146 72.2 105.8 -93.0 39.2 8.8 -2.0 9.6 7 7 A G S S- 0 0 37 3,-0.1 2,-1.7 -2,-0.1 -2,-0.1 -0.974 90.5 -17.1-126.2 123.7 12.4 -2.8 8.7 8 8 A G S >> S+ 0 0 63 -2,-0.5 3,-0.8 1,-0.2 4,-0.7 -0.510 132.9 57.1 88.2 -69.0 13.4 -5.1 5.9 9 9 A N H 3> S+ 0 0 43 -2,-1.7 4,-1.5 1,-0.3 3,-0.3 0.749 98.0 65.8 -65.6 -22.8 10.0 -6.7 5.3 10 10 A W H 3> S+ 0 0 32 1,-0.2 4,-3.1 2,-0.2 5,-0.3 0.874 91.6 59.9 -66.5 -35.9 8.7 -3.2 4.8 11 11 A K H <> S+ 0 0 158 -3,-0.8 4,-1.5 1,-0.2 -1,-0.2 0.823 103.4 55.0 -62.0 -28.3 10.8 -2.9 1.7 12 12 A Q H X S+ 0 0 109 -4,-0.7 4,-2.8 -3,-0.3 -1,-0.2 0.946 113.4 37.3 -67.9 -50.7 8.8 -5.9 0.4 13 13 A F H X S+ 0 0 10 -4,-1.5 4,-3.2 2,-0.3 5,-0.4 0.815 110.2 61.0 -77.3 -30.1 5.4 -4.3 0.9 14 14 A K H X S+ 0 0 61 -4,-3.1 4,-1.4 1,-0.2 -1,-0.2 0.947 115.7 35.6 -55.6 -45.4 6.6 -0.9 -0.1 15 15 A G H X S+ 0 0 28 -4,-1.5 4,-0.8 -5,-0.3 -2,-0.3 0.895 115.5 56.0 -73.5 -40.1 7.4 -2.6 -3.4 16 16 A K H >X S+ 0 0 85 -4,-2.8 4,-2.3 1,-0.2 3,-0.9 0.944 111.6 41.6 -59.3 -53.0 4.3 -4.9 -3.3 17 17 A V H 3X>S+ 0 0 4 -4,-3.2 4,-3.4 1,-0.2 5,-0.9 0.878 111.2 57.2 -61.7 -38.9 1.8 -2.0 -2.9 18 18 A K H 3<5S+ 0 0 76 -4,-1.4 -1,-0.2 -5,-0.4 -2,-0.2 0.630 110.1 46.3 -70.6 -12.5 3.7 -0.0 -5.5 19 19 A E H <<5S+ 0 0 145 -3,-0.9 -2,-0.2 -4,-0.8 -1,-0.2 0.856 118.4 38.8 -88.0 -47.5 3.2 -2.9 -7.9 20 20 A Q H <5S+ 0 0 66 -4,-2.3 -2,-0.2 -5,-0.1 -3,-0.2 0.941 143.2 6.3 -70.2 -49.5 -0.5 -3.5 -7.1 21 21 A W T <5S+ 0 0 19 -4,-3.4 -3,-0.2 -5,-0.2 -4,-0.1 0.837 74.3 177.7 -94.8 -75.8 -1.4 0.2 -6.9 22 22 A G < + 0 0 39 -5,-0.9 -4,-0.1 2,-0.1 -1,-0.1 0.054 59.3 90.8 98.1 -27.5 1.8 2.1 -7.9 23 23 A K S S+ 0 0 119 2,-0.1 2,-0.2 20,-0.0 -5,-0.1 0.797 70.1 90.5 -70.0 -27.5 0.3 5.6 -7.5 24 24 A L S S- 0 0 1 -7,-0.2 2,-0.1 1,-0.1 -2,-0.1 -0.474 70.3-146.0 -74.0 137.4 1.5 5.7 -3.9 25 25 A T > - 0 0 56 -2,-0.2 4,-2.8 1,-0.1 5,-0.1 -0.445 32.7 -93.0 -98.5 174.3 5.0 7.0 -3.3 26 26 A D H > S+ 0 0 85 1,-0.2 4,-2.0 2,-0.2 5,-0.1 0.800 127.6 52.7 -59.2 -30.8 7.6 6.0 -0.7 27 27 A D H > S+ 0 0 101 2,-0.2 4,-1.2 1,-0.2 -1,-0.2 0.920 109.5 47.6 -70.1 -42.5 6.2 8.7 1.6 28 28 A D H >> S+ 0 0 0 1,-0.2 4,-1.4 2,-0.2 3,-0.5 0.928 110.4 55.2 -60.1 -44.7 2.6 7.4 1.3 29 29 A M H >X S+ 0 0 0 -4,-2.8 4,-2.4 1,-0.2 3,-0.9 0.926 103.1 52.0 -54.0 -53.1 4.0 4.0 1.9 30 30 A T H 3< S+ 0 0 85 -4,-2.0 -1,-0.2 1,-0.3 -2,-0.2 0.757 107.3 53.8 -63.8 -25.1 5.7 4.8 5.2 31 31 A I H << S+ 0 0 71 -4,-1.2 -1,-0.3 -3,-0.5 -2,-0.2 0.810 116.7 39.3 -75.8 -29.1 2.4 6.3 6.5 32 32 A I H X< S+ 0 0 6 -4,-1.4 2,-3.4 -3,-0.9 3,-2.1 0.974 70.9 144.5 -79.3 -69.4 0.7 3.1 5.7 33 33 A E T 3< S- 0 0 53 -4,-2.4 -1,-0.2 1,-0.3 -2,-0.1 -0.263 92.8 -20.6 65.4 -60.0 3.3 0.5 6.7 34 34 A G T 3 S+ 0 0 9 -2,-3.4 2,-0.6 -3,-0.2 -1,-0.3 0.223 102.0 122.6-162.9 12.9 0.7 -2.0 7.9 35 35 A K <> - 0 0 94 -3,-2.1 4,-1.6 1,-0.2 5,-0.1 -0.772 43.5-161.6 -89.7 121.8 -2.4 -0.0 8.6 36 36 A R H > S+ 0 0 113 -2,-0.6 4,-1.8 2,-0.2 -1,-0.2 0.918 95.1 50.8 -61.5 -44.0 -5.5 -1.2 6.6 37 37 A D H > S+ 0 0 118 1,-0.2 4,-2.4 2,-0.2 -1,-0.2 0.910 106.7 53.5 -62.2 -44.6 -7.1 2.2 7.3 38 38 A Q H > S+ 0 0 56 1,-0.2 4,-3.0 2,-0.2 -1,-0.2 0.877 107.0 50.6 -61.9 -41.0 -4.1 4.2 6.1 39 39 A L H X S+ 0 0 1 -4,-1.6 4,-2.9 2,-0.2 5,-0.2 0.914 108.4 53.8 -63.3 -40.3 -4.0 2.4 2.7 40 40 A V H X S+ 0 0 7 -4,-1.8 4,-1.8 1,-0.2 -2,-0.2 0.936 112.2 44.3 -56.3 -47.6 -7.7 3.2 2.4 41 41 A G H X S+ 0 0 20 -4,-2.4 4,-1.0 1,-0.2 -2,-0.2 0.925 112.4 51.6 -62.5 -45.0 -7.0 6.8 2.9 42 42 A K H X S+ 0 0 10 -4,-3.0 4,-3.3 1,-0.2 5,-0.5 0.876 107.4 51.8 -62.6 -40.9 -3.9 6.7 0.6 43 43 A I H X>S+ 0 0 0 -4,-2.9 5,-1.8 1,-0.2 4,-1.4 0.918 111.5 48.3 -59.3 -41.0 -5.9 5.2 -2.2 44 44 A Q H <5S+ 0 0 75 -4,-1.8 -1,-0.2 4,-0.3 -2,-0.2 0.662 118.2 42.6 -74.1 -16.2 -8.5 8.0 -1.7 45 45 A E H <5S+ 0 0 130 -4,-1.0 -2,-0.2 -3,-0.4 -3,-0.2 0.902 118.8 36.6 -92.6 -54.4 -5.6 10.5 -1.7 46 46 A R H <5S+ 0 0 93 -4,-3.3 -3,-0.2 1,-0.1 -2,-0.1 0.919 138.0 18.2 -72.1 -45.8 -3.3 9.5 -4.5 47 47 A Y T <5S- 0 0 79 -4,-1.4 -3,-0.2 -5,-0.5 -1,-0.1 0.879 98.5-127.8 -87.5 -45.6 -6.0 8.3 -6.9 48 48 A G < + 0 0 45 -5,-1.8 -4,-0.3 -6,-0.2 -3,-0.1 0.714 49.0 161.8 97.7 30.3 -8.9 10.0 -5.4 49 49 A Y - 0 0 82 -6,-1.2 2,-0.2 1,-0.1 -1,-0.1 -0.192 39.8-103.2 -74.8 170.9 -11.1 7.0 -5.1 50 50 A Q > - 0 0 140 1,-0.1 4,-3.0 -7,-0.0 5,-0.2 -0.511 32.4-106.2 -89.0 164.8 -14.2 6.6 -2.9 51 51 A K H > S+ 0 0 124 1,-0.2 4,-2.6 2,-0.2 5,-0.3 0.889 120.6 55.6 -57.6 -40.1 -14.2 4.6 0.4 52 52 A D H > S+ 0 0 132 1,-0.2 4,-1.4 2,-0.2 -1,-0.2 0.945 114.3 37.3 -56.5 -52.8 -16.2 1.9 -1.4 53 53 A Q H > S+ 0 0 62 2,-0.2 4,-1.9 1,-0.2 -2,-0.2 0.877 115.0 55.6 -70.2 -38.4 -13.6 1.4 -4.1 54 54 A A H X S+ 0 0 0 -4,-3.0 4,-2.3 1,-0.2 -2,-0.2 0.940 111.4 41.0 -63.9 -48.4 -10.6 2.0 -1.8 55 55 A E H X S+ 0 0 33 -4,-2.6 4,-3.2 1,-0.2 5,-0.3 0.800 108.5 63.1 -73.1 -25.7 -11.5 -0.8 0.7 56 56 A K H X S+ 0 0 128 -4,-1.4 4,-1.5 -5,-0.3 -1,-0.2 0.934 111.0 37.4 -59.4 -46.5 -12.5 -3.0 -2.2 57 57 A E H X S+ 0 0 35 -4,-1.9 4,-2.6 2,-0.2 5,-0.3 0.863 115.8 55.1 -73.1 -36.9 -8.9 -2.9 -3.4 58 58 A V H X S+ 0 0 0 -4,-2.3 4,-3.0 2,-0.2 -2,-0.2 0.955 108.9 45.6 -60.7 -52.5 -7.5 -2.9 0.1 59 59 A V H X S+ 0 0 74 -4,-3.2 4,-2.4 2,-0.2 5,-0.2 0.900 114.0 50.3 -60.1 -42.6 -9.4 -6.1 1.1 60 60 A D H X S+ 0 0 72 -4,-1.5 4,-1.3 -5,-0.3 -2,-0.2 0.971 116.0 39.6 -59.0 -56.4 -8.4 -7.9 -2.1 61 61 A W H X S+ 0 0 13 -4,-2.6 4,-1.5 1,-0.2 5,-0.3 0.858 112.6 59.9 -63.1 -36.1 -4.7 -7.0 -1.8 62 62 A E H >X S+ 0 0 32 -4,-3.0 4,-1.6 -5,-0.3 3,-0.9 0.970 104.5 46.3 -54.4 -58.6 -4.9 -7.7 2.0 63 63 A T H 3< S+ 0 0 89 -4,-2.4 -1,-0.2 1,-0.3 -2,-0.2 0.766 107.6 59.9 -61.5 -26.0 -5.9 -11.3 1.6 64 64 A R H 3< S+ 0 0 171 -4,-1.3 -1,-0.3 -5,-0.2 -2,-0.2 0.886 127.6 11.3 -65.7 -39.6 -3.2 -11.8 -1.1 65 65 A N H << S- 0 0 38 -4,-1.5 -2,-0.2 -3,-0.9 -3,-0.2 0.862 71.0-178.8-103.6 -66.9 -0.5 -10.8 1.5 66 66 A E >< + 0 0 102 -4,-1.6 2,-2.0 -5,-0.3 3,-0.5 0.387 41.5 125.8 78.0 -1.8 -2.0 -10.7 5.0 67 67 A Y T 3 + 0 0 103 1,-0.2 -1,-0.2 -5,-0.2 -54,-0.1 -0.550 30.7 120.2 -83.4 71.3 1.3 -9.7 6.5 68 68 A R T 3 0 0 18 -2,-2.0 -1,-0.2 -3,-0.1 -32,-0.1 0.614 360.0 360.0-109.5 -22.9 -0.4 -6.7 8.1 69 69 A W < 0 0 142 -3,-0.5 -65,-4.0 -66,-0.1 -2,-0.1 0.777 360.0 360.0-114.3 360.0 0.3 -7.5 11.8