==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=12-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 08-JAN-04 1S29 . COMPND 2 MOLECULE: LA PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI; . AUTHOR G.DONG,G.CHAKSHUSMATHI,S.L.WOLIN,K.M.REINISCH . 92 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6227.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 56 60.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 7 7.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 15 16.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 31 33.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 3 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G > 0 0 66 0, 0.0 3,-1.6 0, 0.0 59,-0.0 0.000 360.0 360.0 360.0 24.6 11.8 34.3 11.1 2 2 A S T 3 + 0 0 136 1,-0.3 0, 0.0 3,-0.0 0, 0.0 0.830 360.0 38.0 -38.2 -40.2 9.6 36.6 13.1 3 3 A H T 3 S+ 0 0 158 1,-0.1 -1,-0.3 2,-0.1 0, 0.0 0.678 121.9 44.9 -89.2 -17.6 9.8 39.0 10.1 4 4 A X S < S- 0 0 121 -3,-1.6 -1,-0.1 3,-0.0 2,-0.0 -0.939 81.7-113.4-128.8 151.3 9.8 36.3 7.3 5 5 A P - 0 0 117 0, 0.0 2,-0.8 0, 0.0 -2,-0.1 -0.260 29.6-107.9 -77.5 165.4 7.7 33.2 6.7 6 6 A L - 0 0 24 4,-0.0 5,-0.0 1,-0.0 54,-0.0 -0.859 44.3-136.9 -93.7 112.0 8.8 29.6 6.6 7 7 A S > - 0 0 52 -2,-0.8 4,-2.2 1,-0.1 5,-0.2 -0.049 21.1-103.0 -64.5 168.7 8.8 28.7 3.0 8 8 A S H > S+ 0 0 82 1,-0.2 4,-2.1 2,-0.2 5,-0.2 0.912 124.1 49.1 -61.9 -40.5 7.5 25.4 1.5 9 9 A E H > S+ 0 0 126 1,-0.2 4,-1.8 2,-0.2 -1,-0.2 0.907 112.4 46.5 -66.6 -40.5 11.1 24.2 1.1 10 10 A N H > S+ 0 0 71 2,-0.2 4,-2.0 1,-0.2 -1,-0.2 0.795 110.2 54.4 -71.3 -27.2 12.0 25.1 4.7 11 11 A K H X S+ 0 0 73 -4,-2.2 4,-2.4 2,-0.2 -2,-0.2 0.905 109.0 48.1 -69.4 -40.8 8.8 23.5 5.9 12 12 A Q H X S+ 0 0 99 -4,-2.1 4,-1.9 2,-0.2 -2,-0.2 0.860 110.1 52.6 -66.8 -34.7 9.8 20.3 4.1 13 13 A K H X S+ 0 0 114 -4,-1.8 4,-1.2 2,-0.2 -1,-0.2 0.911 111.8 44.7 -66.4 -42.6 13.3 20.5 5.7 14 14 A L H X S+ 0 0 0 -4,-2.0 4,-2.2 2,-0.2 5,-0.2 0.869 107.3 60.1 -68.7 -37.1 11.8 20.9 9.2 15 15 A Q H X S+ 0 0 30 -4,-2.4 4,-2.5 1,-0.2 -2,-0.2 0.938 106.4 47.0 -54.5 -49.0 9.4 18.0 8.5 16 16 A K H X S+ 0 0 131 -4,-1.9 4,-1.6 1,-0.2 -1,-0.2 0.804 108.3 55.3 -66.0 -29.1 12.3 15.7 7.8 17 17 A Q H X S+ 0 0 57 -4,-1.2 4,-1.7 2,-0.2 -1,-0.2 0.881 110.0 45.6 -71.1 -38.1 14.1 16.9 11.0 18 18 A V H X S+ 0 0 1 -4,-2.2 4,-1.5 2,-0.2 -2,-0.2 0.919 112.6 50.6 -69.3 -41.8 11.0 16.0 13.1 19 19 A E H < S+ 0 0 28 -4,-2.5 4,-0.5 -5,-0.2 -2,-0.2 0.849 105.7 60.1 -62.8 -31.1 10.8 12.7 11.3 20 20 A F H >< S+ 0 0 67 -4,-1.6 3,-1.2 1,-0.2 6,-0.3 0.943 103.6 47.3 -61.2 -49.9 14.5 12.2 12.1 21 21 A Y H 3< S+ 0 0 30 -4,-1.7 -1,-0.2 1,-0.3 -2,-0.2 0.836 117.7 43.5 -62.9 -31.1 13.9 12.4 15.8 22 22 A F T 3< S+ 0 0 6 -4,-1.5 -1,-0.3 -5,-0.1 -2,-0.2 0.353 86.3 124.6 -95.7 5.0 11.0 9.9 15.6 23 23 A S S <> S- 0 0 35 -3,-1.2 4,-2.8 -4,-0.5 5,-0.4 -0.249 74.1-113.1 -64.6 154.9 12.7 7.5 13.1 24 24 A D H > S+ 0 0 80 1,-0.2 4,-1.2 2,-0.2 -1,-0.1 0.903 115.9 48.0 -53.3 -45.2 13.0 3.8 14.1 25 25 A V H 4 S+ 0 0 85 1,-0.2 -1,-0.2 2,-0.1 4,-0.2 0.934 119.4 35.7 -64.1 -48.2 16.8 4.1 14.4 26 26 A N H >> S+ 0 0 43 -6,-0.3 3,-2.0 1,-0.2 4,-0.8 0.910 110.6 57.1 -75.0 -46.3 16.9 7.2 16.5 27 27 A V H >< S+ 0 0 0 -4,-2.8 3,-0.9 1,-0.3 7,-0.3 0.857 100.5 60.3 -56.0 -37.3 13.9 6.9 18.7 28 28 A Q T 3< S+ 0 0 93 -4,-1.2 -1,-0.3 -5,-0.4 -2,-0.2 0.628 109.8 42.6 -68.7 -9.8 15.2 3.6 20.0 29 29 A R T <4 S+ 0 0 193 -3,-2.0 2,-1.1 -4,-0.2 -1,-0.2 0.504 93.2 92.4-109.4 -8.3 18.3 5.3 21.3 30 30 A D S+ 0 0 141 -2,-1.1 4,-1.6 1,-0.2 -1,-0.2 0.871 82.7 50.2 -61.1 -39.9 15.8 7.7 26.4 32 32 A F H > S+ 0 0 112 2,-0.2 4,-1.7 1,-0.2 -1,-0.2 0.960 113.3 43.8 -65.7 -50.3 14.4 11.2 26.9 33 33 A L H > S+ 0 0 0 1,-0.2 4,-2.5 2,-0.2 -2,-0.2 0.916 113.0 51.3 -62.9 -43.0 12.1 11.1 23.9 34 34 A K H X S+ 0 0 76 -4,-2.9 4,-1.7 -7,-0.3 -1,-0.2 0.853 106.9 56.9 -61.7 -31.5 10.9 7.6 24.7 35 35 A G H < S+ 0 0 39 -4,-1.6 -1,-0.2 -5,-0.2 -2,-0.2 0.899 107.9 45.5 -65.3 -41.1 10.2 8.9 28.2 36 36 A K H >< S+ 0 0 56 -4,-1.7 3,-1.6 1,-0.2 4,-0.3 0.916 111.2 52.9 -67.3 -43.2 7.9 11.6 26.8 37 37 A X H >< S+ 0 0 17 -4,-2.5 3,-0.9 1,-0.3 6,-0.5 0.815 104.5 56.8 -61.5 -31.0 6.2 9.1 24.5 38 38 A A T 3< S+ 0 0 81 -4,-1.7 -1,-0.3 1,-0.2 -2,-0.2 0.471 82.8 84.9 -80.8 -2.7 5.5 6.8 27.5 39 39 A E T < S+ 0 0 135 -3,-1.6 2,-0.3 -4,-0.2 -1,-0.2 0.711 103.0 23.0 -71.1 -20.5 3.7 9.5 29.3 40 40 A N S X S- 0 0 46 -3,-0.9 3,-1.2 -4,-0.3 -1,-0.1 -0.975 82.1-116.1-143.4 156.3 0.5 8.5 27.4 41 41 A A T 3 S+ 0 0 113 -2,-0.3 -3,-0.1 1,-0.2 -4,-0.0 0.545 111.0 58.1 -69.7 -8.6 -0.7 5.4 25.6 42 42 A E T 3 S- 0 0 132 2,-0.1 -1,-0.2 -5,-0.0 45,-0.1 0.539 105.7-122.6 -99.4 -7.8 -0.7 7.1 22.2 43 43 A G < + 0 0 12 -3,-1.2 44,-0.3 -6,-0.5 2,-0.2 0.725 50.7 167.1 73.7 20.6 2.9 8.1 22.3 44 44 A F - 0 0 19 -7,-0.2 2,-0.4 42,-0.1 -1,-0.2 -0.481 18.1-166.6 -71.5 138.7 2.1 11.8 21.8 45 45 A V E -A 85 0A 2 40,-2.5 40,-2.2 -2,-0.2 -8,-0.1 -0.993 26.1-112.5-126.2 130.6 4.8 14.3 22.4 46 46 A S E >> -A 84 0A 27 -2,-0.4 4,-1.4 38,-0.2 3,-0.9 -0.335 14.7-132.7 -65.5 143.0 4.1 18.0 22.8 47 47 A L H 3> S+ 0 0 0 36,-2.7 4,-1.8 1,-0.3 -1,-0.1 0.796 107.3 64.2 -66.1 -26.1 5.3 20.3 20.0 48 48 A E H 34 S+ 0 0 142 35,-0.5 4,-0.3 1,-0.2 -1,-0.3 0.847 100.7 51.9 -66.3 -28.3 6.7 22.6 22.7 49 49 A T H X4 S+ 0 0 17 -3,-0.9 3,-1.6 1,-0.2 4,-0.3 0.908 105.9 53.9 -70.5 -40.8 9.0 19.8 23.6 50 50 A L H >< S+ 0 0 1 -4,-1.4 3,-1.7 1,-0.3 7,-0.3 0.850 97.3 65.9 -61.1 -33.2 10.1 19.5 20.0 51 51 A L T 3< S+ 0 0 32 -4,-1.8 -1,-0.3 1,-0.3 -2,-0.2 0.682 94.9 59.6 -62.6 -17.0 11.0 23.2 20.0 52 52 A T T < S+ 0 0 101 -3,-1.6 2,-0.3 -4,-0.3 -1,-0.3 0.593 83.5 97.8 -88.3 -10.7 13.7 22.4 22.6 53 53 A F S X> S- 0 0 24 -3,-1.7 4,-3.1 -4,-0.3 3,-1.5 -0.625 79.8-125.2 -81.8 136.0 15.6 20.0 20.2 54 54 A K H 3> S+ 0 0 163 -2,-0.3 4,-1.7 1,-0.3 5,-0.2 0.817 105.9 52.2 -45.9 -49.2 18.5 21.5 18.3 55 55 A R H 34 S+ 0 0 95 1,-0.2 -1,-0.3 2,-0.2 -38,-0.1 0.694 119.0 37.6 -68.7 -17.4 17.4 20.6 14.8 56 56 A V H X> S+ 0 0 1 -3,-1.5 4,-2.4 -6,-0.3 3,-1.6 0.847 112.2 56.6 -95.2 -45.9 14.1 22.2 15.4 57 57 A N H 3< S+ 0 0 89 -4,-3.1 -2,-0.2 -7,-0.3 -3,-0.2 0.747 101.1 58.2 -56.7 -30.5 15.2 25.1 17.5 58 58 A S T 3< S+ 0 0 86 -4,-1.7 -1,-0.3 -5,-0.3 -2,-0.1 0.721 114.8 37.5 -75.5 -17.8 17.6 26.3 14.8 59 59 A V T <4 S- 0 0 51 -3,-1.6 2,-0.3 1,-0.3 -2,-0.2 0.796 126.2 -4.5-100.9 -37.8 14.7 26.6 12.3 60 60 A T < - 0 0 6 -4,-2.4 -1,-0.3 -9,-0.1 3,-0.0 -0.985 31.9-162.5-155.8 162.5 11.8 27.9 14.4 61 61 A T S S+ 0 0 114 -2,-0.3 2,-0.5 -3,-0.1 -4,-0.1 0.110 72.5 92.6-131.7 16.0 10.6 28.9 17.9 62 62 A D >> - 0 0 64 1,-0.1 4,-1.5 -11,-0.0 3,-1.2 -0.951 60.8-155.0-120.9 116.9 6.9 28.8 17.1 63 63 A V H 3> S+ 0 0 42 -2,-0.5 4,-1.9 1,-0.3 -1,-0.1 0.797 95.9 62.9 -56.6 -29.6 4.7 25.7 17.6 64 64 A K H 3> S+ 0 0 149 1,-0.2 4,-1.4 2,-0.2 -1,-0.3 0.836 102.8 47.5 -68.1 -30.9 2.4 26.9 14.9 65 65 A E H <> S+ 0 0 46 -3,-1.2 4,-2.2 2,-0.2 -1,-0.2 0.847 108.6 55.6 -76.8 -32.5 5.1 26.8 12.2 66 66 A V H X S+ 0 0 0 -4,-1.5 4,-2.3 1,-0.2 -2,-0.2 0.882 103.8 55.1 -66.2 -35.5 6.0 23.3 13.4 67 67 A V H X S+ 0 0 21 -4,-1.9 4,-2.5 1,-0.2 -1,-0.2 0.938 109.9 45.3 -62.3 -45.9 2.3 22.2 12.9 68 68 A E H < S+ 0 0 77 -4,-1.4 -1,-0.2 1,-0.2 -2,-0.2 0.881 113.5 50.2 -65.3 -38.5 2.5 23.4 9.2 69 69 A A H < S+ 0 0 1 -4,-2.2 -1,-0.2 1,-0.2 -2,-0.2 0.877 115.8 42.3 -67.1 -38.0 5.8 21.7 8.7 70 70 A I H >< S+ 0 0 2 -4,-2.3 3,-2.5 -5,-0.2 6,-0.2 0.862 91.2 82.3 -78.9 -38.4 4.6 18.4 10.1 71 71 A R T 3< S+ 0 0 133 -4,-2.5 -1,-0.2 1,-0.3 -2,-0.1 0.782 86.6 55.8 -38.3 -50.4 1.2 18.1 8.6 72 72 A P T 3 S+ 0 0 87 0, 0.0 -1,-0.3 0, 0.0 -2,-0.1 0.682 84.3 114.2 -60.5 -18.8 2.3 16.6 5.2 73 73 A S < - 0 0 11 -3,-2.5 -3,-0.0 -4,-0.2 -57,-0.0 -0.192 50.0-165.7 -59.5 144.0 4.1 13.8 6.9 74 74 A E S S+ 0 0 170 1,-0.1 -1,-0.1 3,-0.1 -3,-0.0 0.378 90.9 55.2-106.2 -1.7 3.0 10.2 6.4 75 75 A K S S+ 0 0 121 13,-0.1 13,-2.6 12,-0.1 14,-0.4 0.537 106.5 53.7-105.4 -13.2 5.2 9.0 9.3 76 76 A L E -B 87 0A 10 11,-0.2 2,-0.4 -6,-0.2 11,-0.2 -0.888 63.3-156.3-124.1 155.1 3.8 11.4 11.9 77 77 A V E -B 86 0A 38 9,-2.4 9,-2.3 -2,-0.3 2,-0.2 -0.997 13.4-140.2-134.2 127.8 0.2 12.2 13.2 78 78 A L E -B 85 0A 38 -2,-0.4 7,-0.2 7,-0.2 -34,-0.0 -0.581 27.2-108.5 -85.6 147.5 -0.8 15.5 14.8 79 79 A S > - 0 0 16 5,-2.4 3,-2.2 -2,-0.2 -1,-0.1 -0.319 35.0-103.3 -70.4 158.2 -3.2 15.5 17.8 80 80 A E T 3 S+ 0 0 203 1,-0.3 -1,-0.1 2,-0.1 -2,-0.1 0.849 124.9 46.3 -50.8 -37.5 -6.8 16.7 17.2 81 81 A D T 3 S- 0 0 104 1,-0.0 -1,-0.3 0, 0.0 -2,-0.0 0.425 108.5-125.2 -87.8 0.8 -5.8 20.0 18.9 82 82 A G S < S+ 0 0 18 -3,-2.2 -2,-0.1 2,-0.1 -15,-0.1 0.747 83.7 106.2 63.7 25.5 -2.5 20.4 17.0 83 83 A L S S+ 0 0 99 -36,-0.1 -36,-2.7 1,-0.1 -35,-0.5 0.511 77.6 38.6-109.2 -8.7 -0.4 20.7 20.2 84 84 A X E -A 46 0A 55 -38,-0.3 -5,-2.4 -37,-0.1 2,-0.3 -0.904 60.5-157.0-138.1 165.7 1.2 17.2 20.0 85 85 A V E -AB 45 78A 0 -40,-2.2 -40,-2.5 -2,-0.3 2,-0.3 -0.993 8.6-173.6-143.9 148.8 2.5 14.7 17.5 86 86 A R E - B 0 77A 61 -9,-2.3 -9,-2.4 -2,-0.3 -42,-0.1 -0.913 34.5 -91.4-137.6 163.3 3.0 10.9 17.5 87 87 A R E - B 0 76A 19 -44,-0.3 -11,-0.2 -2,-0.3 4,-0.1 -0.477 24.2-140.4 -72.2 148.9 4.6 8.3 15.3 88 88 A R S S+ 0 0 147 -13,-2.6 -1,-0.1 -2,-0.1 -12,-0.1 0.885 88.3 55.6 -74.2 -39.3 2.3 6.7 12.8 89 89 A D S S- 0 0 94 -14,-0.4 -2,-0.1 1,-0.1 -14,-0.0 -0.662 92.5-106.0 -99.5 150.0 4.0 3.3 13.5 90 90 A P - 0 0 110 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 -0.215 52.2 -79.8 -66.5 157.2 4.5 1.5 16.9 91 91 A L 0 0 92 1,-0.1 -67,-0.1 -4,-0.1 0, 0.0 -0.310 360.0 360.0 -56.4 142.2 7.9 1.3 18.6 92 92 A P 0 0 107 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 0.082 360.0 360.0 -55.1 360.0 10.0 -1.4 16.8