==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=12-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER OXIDOREDUCTASE 13-JAN-04 1S3A . COMPND 2 MOLECULE: NADH-UBIQUINONE OXIDOREDUCTASE B8 SUBUNIT; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR C.BROCKMANN,A.DIEHL,K.REHBEIN,R.KUHNE,H.OSCHKINAT . 85 1 1 1 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5144.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 60 70.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 5 5.9 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 14 16.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 9.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 3.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 24 28.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 3.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 15 A G 0 0 36 0, 0.0 55,-0.6 0, 0.0 2,-0.2 0.000 360.0 360.0 360.0 8.3 3.6 -12.4 -2.8 2 16 A L E -A 55 0A 18 34,-1.0 53,-0.2 53,-0.2 3,-0.1 -0.814 360.0 -98.3-152.5-173.8 6.6 -10.4 -1.5 3 17 A R E S- 0 0 170 51,-1.1 2,-0.3 1,-0.3 52,-0.2 0.820 93.6 -7.2 -89.0 -35.9 8.8 -9.6 1.4 4 18 A E E -A 54 0A 43 50,-1.9 50,-2.6 -3,-0.0 2,-0.4 -0.962 40.1-164.4-165.6 144.8 7.2 -6.4 2.5 5 19 A I E +Ab 53 39A 0 33,-0.9 35,-2.1 -2,-0.3 2,-0.5 -0.998 16.7 179.2-123.7 125.7 4.6 -3.6 2.0 6 20 A R E -Ab 52 40A 81 46,-2.5 46,-1.9 -2,-0.4 2,-0.5 -0.931 14.5-154.8-128.1 104.8 5.0 -0.5 3.9 7 21 A I E -Ab 51 41A 1 33,-2.4 35,-3.8 -2,-0.5 2,-0.6 -0.693 7.0-153.0 -77.4 126.1 2.5 2.2 3.3 8 22 A H E +Ab 50 42A 35 42,-2.6 42,-2.0 -2,-0.5 35,-0.2 -0.922 30.8 156.0 -98.6 120.9 3.9 5.4 4.1 9 23 A L + 0 0 36 33,-2.7 36,-0.3 -2,-0.6 37,-0.3 0.584 4.7 145.4-108.8 -98.6 1.0 7.6 5.0 10 24 A a - 0 0 12 32,-0.4 2,-0.4 34,-0.2 32,-0.0 -0.037 55.0-101.2 73.9 170.4 1.0 10.8 7.2 11 25 A Q S S+ 0 0 181 1,-0.1 -1,-0.1 4,-0.0 37,-0.1 -0.939 84.8 96.1-123.9 104.7 -1.2 13.8 6.8 12 26 A R S S+ 0 0 183 1,-0.6 36,-0.2 -2,-0.4 3,-0.1 0.355 78.1 16.4-155.1 -59.2 1.0 16.4 5.1 13 27 A S S S- 0 0 29 34,-1.1 -1,-0.6 1,-0.2 34,-0.0 -0.532 106.4 -21.7-122.5-179.0 0.8 16.7 1.4 14 28 A P + 0 0 85 0, 0.0 2,-0.2 0, 0.0 -1,-0.2 0.022 69.8 171.5 -27.0 117.1 -1.7 15.5 -1.5 15 29 A G - 0 0 35 33,-0.1 2,-0.3 -3,-0.1 3,-0.1 -0.670 18.8-133.6-128.3-179.8 -3.8 12.6 -0.3 16 30 A S > - 0 0 17 -2,-0.2 4,-2.3 1,-0.1 51,-0.1 -0.923 20.2-135.7-140.5 166.7 -6.7 10.7 -1.5 17 31 A Q H > S+ 0 0 120 -2,-0.3 4,-3.0 2,-0.2 5,-0.1 0.769 111.9 54.9 -89.9 -31.5 -10.0 9.2 -0.5 18 32 A G H > S+ 0 0 0 48,-0.3 4,-2.2 2,-0.2 -1,-0.2 0.874 111.7 45.5 -69.4 -33.5 -9.2 6.0 -2.2 19 33 A V H > S+ 0 0 1 47,-0.2 4,-3.1 2,-0.2 -2,-0.2 0.988 113.1 48.1 -68.6 -59.8 -6.1 6.0 -0.1 20 34 A R H X S+ 0 0 159 -4,-2.3 4,-2.6 1,-0.2 5,-0.4 0.859 111.1 53.4 -42.6 -49.2 -8.0 6.9 3.0 21 35 A D H X>S+ 0 0 62 -4,-3.0 5,-2.3 2,-0.2 4,-1.4 0.935 111.4 44.4 -55.2 -53.5 -10.5 4.2 2.2 22 36 A F H X>S+ 0 0 0 -4,-2.2 5,-1.5 3,-0.2 4,-0.9 0.985 112.4 53.5 -51.5 -56.7 -7.8 1.7 1.9 23 37 A I H <5S+ 0 0 34 -4,-3.1 -2,-0.2 3,-0.2 -1,-0.2 0.759 129.6 10.7 -49.4 -43.3 -6.2 3.0 5.0 24 38 A E H <5S+ 0 0 110 -4,-2.6 4,-0.4 -5,-0.2 -3,-0.2 0.863 135.3 33.1-107.4 -54.8 -9.3 2.6 7.2 25 39 A K H <5S+ 0 0 121 -4,-1.4 4,-0.2 -5,-0.4 -3,-0.2 0.814 130.9 31.6 -78.3 -33.4 -12.0 0.7 5.5 26 40 A R T X> S+ 0 0 82 -4,-0.4 4,-1.8 1,-0.3 -1,-0.2 0.842 119.2 57.0 -57.2 -30.6 -7.8 -5.1 7.8 29 43 A E H 3> S+ 0 0 75 -4,-0.2 4,-2.0 2,-0.2 -1,-0.3 0.836 108.0 43.9 -72.4 -33.7 -9.5 -6.2 4.7 30 44 A L H < S+ 0 0 11 -4,-2.2 3,-1.4 1,-0.2 -1,-0.3 -0.861 74.0 176.6-128.3 82.8 -3.8 -10.7 0.7 35 49 A P T 3 S+ 0 0 94 0, 0.0 -1,-0.2 0, 0.0 -2,-0.1 0.915 80.9 52.0 -58.3 -45.7 -2.6 -12.9 3.5 36 50 A D T 3 S+ 0 0 127 -3,-0.1 -34,-1.0 -4,-0.1 -4,-0.1 0.099 89.4 102.3 -80.8 22.8 0.9 -13.2 2.2 37 51 A L < - 0 0 7 -3,-1.4 2,-0.4 -6,-0.3 -3,-0.1 -0.936 69.4-139.4-114.2 106.8 1.1 -9.5 2.0 38 52 A P - 0 0 39 0, 0.0 -33,-0.9 0, 0.0 2,-0.6 -0.584 22.5-164.6 -58.4 126.3 3.2 -7.8 4.8 39 53 A I E +b 5 0A 18 -2,-0.4 2,-0.5 -35,-0.1 -33,-0.2 -0.934 16.8 167.4-128.9 105.5 1.3 -4.6 5.7 40 54 A L E -b 6 0A 65 -35,-2.1 -33,-2.4 -2,-0.6 2,-0.7 -0.985 25.8-145.1-117.4 125.7 3.0 -1.9 7.7 41 55 A I E -b 7 0A 72 -2,-0.5 2,-0.2 -35,-0.2 -33,-0.2 -0.818 29.2-169.5 -91.7 115.1 1.4 1.5 8.1 42 56 A R E -b 8 0A 137 -35,-3.8 -33,-2.7 -2,-0.7 -32,-0.4 -0.596 12.0-116.6-108.3 171.8 4.1 4.1 8.2 43 57 A E - 0 0 124 -35,-0.2 -1,-0.1 1,-0.2 5,-0.0 -0.312 55.6 -32.1-107.6 171.2 4.5 7.7 8.9 44 58 A a + 0 0 75 1,-0.2 -1,-0.2 -2,-0.1 -34,-0.2 0.125 69.5 131.3 -23.3 123.0 5.5 11.1 7.2 45 59 A S - 0 0 63 -36,-0.3 -1,-0.2 1,-0.3 2,-0.1 0.485 69.3 -16.0-151.3 -42.5 8.1 10.5 4.6 46 60 A D S S- 0 0 95 -37,-0.3 -1,-0.3 2,-0.2 -33,-0.1 -0.251 111.5 -30.1-143.7-132.9 7.4 12.2 1.2 47 61 A V S S- 0 0 58 -2,-0.1 -34,-1.1 -35,-0.1 -35,-0.1 0.993 96.9 -89.3 -59.8 -73.1 4.2 13.6 -0.3 48 62 A Q S S+ 0 0 28 -36,-0.2 2,-1.2 -40,-0.1 -2,-0.2 0.005 98.7 44.0-166.7 -83.0 1.8 11.3 1.5 49 63 A P + 0 0 0 0, 0.0 16,-3.0 0, 0.0 2,-0.4 -0.598 63.9 162.2 -92.5 89.5 0.5 7.9 0.3 50 64 A K E -AC 8 64A 4 -42,-2.0 -42,-2.6 -2,-1.2 2,-0.9 -0.843 33.8-136.6-106.8 147.8 3.4 5.9 -1.0 51 65 A L E -AC 7 63A 14 12,-1.5 12,-1.8 -2,-0.4 2,-0.6 -0.865 17.8-164.1-102.1 101.3 3.4 2.3 -1.5 52 66 A W E +AC 6 62A 37 -46,-1.9 -46,-2.5 -2,-0.9 2,-0.4 -0.819 15.1 171.5 -87.1 130.8 6.6 0.8 -0.4 53 67 A A E -AC 5 61A 0 8,-3.3 8,-1.7 -2,-0.6 2,-0.5 -0.997 21.0-178.2-135.1 135.4 7.1 -2.7 -1.6 54 68 A R E -AC 4 60A 85 -50,-2.6 -50,-1.9 -2,-0.4 -51,-1.1 -0.908 27.6-157.9-131.9 95.6 10.1 -4.8 -1.4 55 69 A Y E -A 2 0A 2 4,-2.2 3,-0.4 -2,-0.5 -53,-0.2 -0.222 28.7-120.7 -70.3 166.8 9.1 -7.9 -3.2 56 70 A A S S+ 0 0 68 -55,-0.6 -54,-0.1 25,-0.3 -1,-0.1 0.464 117.2 70.1 -87.5 -4.3 10.6 -11.4 -2.8 57 71 A F S S- 0 0 105 -56,-0.2 -1,-0.3 24,-0.1 -55,-0.1 0.646 121.4-121.2 -73.7 -17.6 11.4 -10.9 -6.5 58 72 A G + 0 0 34 -3,-0.4 2,-0.3 1,-0.3 -2,-0.2 0.877 65.8 131.8 79.6 44.4 13.7 -8.5 -4.7 59 73 A Q - 0 0 94 2,-0.0 -4,-2.2 0, 0.0 -1,-0.3 -0.855 50.3-115.7-123.4 160.9 12.6 -5.3 -6.3 60 74 A E E +C 54 0A 113 -2,-0.3 2,-0.3 -6,-0.2 -6,-0.2 -0.648 26.6 170.7 -97.9 151.7 11.7 -1.9 -5.0 61 75 A T E +C 53 0A 21 -8,-1.7 -8,-3.3 -2,-0.3 2,-0.2 -0.920 8.5 158.2-155.5 124.7 8.5 -0.0 -5.0 62 76 A N E +C 52 0A 81 -2,-0.3 -10,-0.3 -10,-0.3 -55,-0.1 -0.637 27.9 157.9-147.1 89.8 7.9 3.2 -3.2 63 77 A V E -C 51 0A 74 -12,-1.8 -12,-1.5 -2,-0.2 2,-0.3 -0.944 48.7-119.0-146.9 130.3 5.0 5.1 -4.7 64 78 A P E -C 50 0A 57 0, 0.0 3,-0.3 0, 0.0 -14,-0.3 -0.308 25.9-175.8 -46.0 106.2 2.3 7.8 -4.2 65 79 A L > + 0 0 7 -16,-3.0 3,-2.3 -2,-0.3 -15,-0.1 0.058 38.4 130.4-102.5 24.4 -0.8 5.9 -4.9 66 80 A N T 3 + 0 0 48 -17,-0.3 -48,-0.3 1,-0.3 -47,-0.2 0.735 66.9 57.1 -49.0 -31.6 -2.9 9.1 -4.6 67 81 A N T 3 S+ 0 0 138 -3,-0.3 2,-0.3 -51,-0.1 -1,-0.3 0.472 93.2 85.2 -87.6 0.2 -4.7 8.4 -7.8 68 82 A F < - 0 0 93 -3,-2.3 2,-0.1 1,-0.0 -50,-0.1 -0.786 69.0-129.6-114.6 149.1 -6.1 5.0 -6.9 69 83 A S > - 0 0 62 -2,-0.3 4,-3.4 -51,-0.1 5,-0.2 -0.388 33.6 -91.4 -89.0 168.1 -9.1 3.9 -5.0 70 84 A A H > S+ 0 0 7 2,-0.2 4,-2.2 1,-0.2 5,-0.2 0.886 119.5 29.8 -45.5 -64.5 -9.6 1.5 -2.0 71 85 A D H > S+ 0 0 96 1,-0.2 4,-2.9 2,-0.2 5,-0.3 0.939 120.1 54.8 -69.5 -44.4 -10.3 -1.8 -3.7 72 86 A Q H > S+ 0 0 87 2,-0.2 4,-3.3 1,-0.2 -2,-0.2 0.880 106.4 50.5 -58.7 -44.8 -8.2 -1.0 -6.7 73 87 A V H X S+ 0 0 2 -4,-3.4 4,-2.8 2,-0.2 -1,-0.2 0.967 113.1 47.0 -59.7 -44.9 -5.2 -0.2 -4.5 74 88 A T H X S+ 0 0 2 -4,-2.2 4,-2.2 -5,-0.2 -2,-0.2 0.894 117.5 41.4 -64.9 -36.0 -5.6 -3.5 -2.7 75 89 A R H X S+ 0 0 143 -4,-2.9 4,-3.0 2,-0.2 -1,-0.2 0.893 113.7 53.0 -75.4 -41.4 -6.1 -5.5 -5.9 76 90 A A H X S+ 0 0 27 -4,-3.3 4,-3.2 -5,-0.3 5,-0.2 0.857 106.5 55.2 -61.2 -37.5 -3.3 -3.4 -7.6 77 91 A L H X S+ 0 0 1 -4,-2.8 4,-3.6 2,-0.2 5,-0.5 0.982 109.4 45.1 -55.4 -54.9 -1.1 -4.4 -4.7 78 92 A E H X S+ 0 0 65 -4,-2.2 4,-2.1 2,-0.2 5,-0.5 0.901 114.1 51.0 -56.3 -44.3 -1.9 -8.1 -5.4 79 93 A N H X S+ 0 0 89 -4,-3.0 4,-1.7 2,-0.2 -2,-0.2 0.989 118.7 35.9 -49.8 -67.0 -1.2 -7.3 -9.1 80 94 A V H X>S+ 0 0 38 -4,-3.2 4,-2.5 1,-0.2 5,-1.9 0.864 124.9 36.5 -58.2 -45.6 2.1 -5.7 -8.4 81 95 A L H <5S+ 0 0 0 -4,-3.6 -25,-0.3 -5,-0.2 -1,-0.2 0.780 113.7 48.3 -93.8 -27.6 3.3 -7.7 -5.6 82 96 A S H <5S- 0 0 58 -4,-2.1 -1,-0.2 -5,-0.5 -2,-0.2 0.758 142.5 -22.5 -84.0 -21.0 2.3 -11.1 -6.2 83 97 A G H <5S+ 0 0 55 -4,-1.7 -2,-0.2 -5,-0.5 -3,-0.2 0.301 108.3 88.5-174.1 37.5 3.6 -10.9 -9.7 84 98 A K T <5 0 0 161 -4,-2.5 -4,-0.2 -6,-0.1 -3,-0.2 0.805 360.0 360.0 -99.6 -44.8 4.0 -7.5 -11.5 85 99 A A < 0 0 35 -5,-1.9 -4,-0.1 -6,-0.1 -24,-0.1 0.589 360.0 360.0-119.3 360.0 7.4 -6.6 -10.5