==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=12-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA-BINDING PROTEIN 07-JAN-94 1SAN . COMPND 2 MOLECULE: ANTENNAPEDIA PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; . AUTHOR Y.Q.QIAN,D.RESENDEZ-PEREZ,W.J.GEHRING,K.WUTHRICH . 62 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4907.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 45 72.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 11.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 8.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 32 51.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 6 A M 0 0 238 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 133.8 0.7 9.1 14.4 2 7 A T - 0 0 131 0, 0.0 2,-0.1 0, 0.0 3,-0.1 -0.970 360.0-101.2-158.5 153.1 -0.8 6.5 12.2 3 8 A Y - 0 0 74 -2,-0.3 32,-0.0 1,-0.1 0, 0.0 -0.468 59.2 -89.1 -74.2 159.7 -2.3 5.9 8.7 4 9 A T > - 0 0 74 -2,-0.1 4,-2.9 1,-0.1 5,-0.2 -0.247 27.8-113.7 -69.5 162.7 -6.1 5.8 8.7 5 10 A R H > S+ 0 0 166 2,-0.2 4,-2.8 1,-0.2 5,-0.1 0.949 121.7 49.2 -54.4 -50.1 -8.2 2.7 9.3 6 11 A Y H > S+ 0 0 107 2,-0.2 4,-3.1 1,-0.2 5,-0.3 0.951 110.0 49.3 -53.6 -56.5 -9.3 3.0 5.7 7 12 A Q H > S+ 0 0 17 1,-0.2 4,-2.8 2,-0.2 -2,-0.2 0.938 113.2 46.8 -51.5 -51.3 -5.8 3.5 4.4 8 13 A T H X S+ 0 0 41 -4,-2.9 4,-2.4 1,-0.2 -1,-0.2 0.893 113.4 50.6 -56.0 -44.0 -4.7 0.4 6.3 9 14 A L H X S+ 0 0 91 -4,-2.8 4,-3.0 -5,-0.2 -2,-0.2 0.960 111.5 46.2 -54.8 -56.3 -7.8 -1.5 5.0 10 15 A E H X S+ 0 0 16 -4,-3.1 4,-2.9 1,-0.2 -2,-0.2 0.877 111.9 53.3 -60.0 -40.5 -7.0 -0.5 1.4 11 16 A L H X S+ 0 0 0 -4,-2.8 4,-2.7 -5,-0.3 -1,-0.2 0.933 110.5 44.5 -59.8 -48.6 -3.4 -1.5 1.9 12 17 A E H X S+ 0 0 52 -4,-2.4 4,-2.9 2,-0.2 -2,-0.2 0.942 114.1 51.3 -65.7 -42.9 -4.3 -4.9 3.2 13 18 A K H X S+ 0 0 110 -4,-3.0 4,-2.7 1,-0.2 -2,-0.2 0.911 112.0 46.6 -52.9 -46.2 -6.8 -5.2 0.3 14 19 A E H X S+ 0 0 2 -4,-2.9 4,-3.3 2,-0.2 -2,-0.2 0.898 111.7 51.6 -66.1 -39.5 -4.0 -4.2 -2.1 15 20 A F H < S+ 0 0 10 -4,-2.7 -2,-0.2 2,-0.2 -1,-0.2 0.875 112.4 45.6 -64.3 -41.9 -1.7 -6.7 -0.4 16 21 A H H < S+ 0 0 147 -4,-2.9 -2,-0.2 -5,-0.2 -1,-0.2 0.951 117.7 44.5 -59.4 -54.5 -4.3 -9.5 -0.9 17 22 A F H < S+ 0 0 149 -4,-2.7 2,-0.3 1,-0.2 -2,-0.2 0.907 132.2 1.7 -56.1 -51.4 -4.9 -8.4 -4.5 18 23 A N < - 0 0 44 -4,-3.3 -1,-0.2 -5,-0.1 3,-0.1 -0.990 51.7-155.1-142.1 148.4 -1.2 -8.0 -5.4 19 24 A R S S+ 0 0 87 -2,-0.3 2,-0.5 1,-0.2 -1,-0.1 0.776 82.2 46.6 -92.5 -34.3 2.2 -8.5 -3.6 20 25 A Y S S- 0 0 139 -5,-0.0 2,-0.8 25,-0.0 -1,-0.2 -0.945 72.6-145.5-126.3 113.4 4.5 -6.1 -5.6 21 26 A L - 0 0 17 -2,-0.5 23,-0.0 -3,-0.1 -6,-0.0 -0.672 14.9-156.9 -89.1 108.4 3.5 -2.6 -6.4 22 27 A T > - 0 0 99 -2,-0.8 4,-3.0 4,-0.0 5,-0.3 -0.137 37.0 -87.1 -72.9 171.8 4.8 -1.3 -9.7 23 28 A R H > S+ 0 0 123 1,-0.2 4,-1.8 2,-0.2 5,-0.1 0.890 122.0 36.8 -50.7 -59.8 5.3 2.4 -10.5 24 29 A R H > S+ 0 0 181 2,-0.2 4,-2.7 1,-0.2 -1,-0.2 0.949 118.5 47.1 -66.9 -50.8 1.8 3.3 -11.8 25 30 A R H > S+ 0 0 76 1,-0.2 4,-3.1 2,-0.2 5,-0.3 0.918 109.7 54.6 -61.9 -42.2 -0.3 1.1 -9.5 26 31 A R H X S+ 0 0 43 -4,-3.0 4,-2.8 1,-0.2 -1,-0.2 0.905 110.3 47.7 -55.2 -42.5 1.7 2.4 -6.4 27 32 A I H X S+ 0 0 59 -4,-1.8 4,-2.5 -5,-0.3 -2,-0.2 0.956 111.4 51.1 -60.4 -49.8 0.8 5.9 -7.5 28 33 A E H X S+ 0 0 65 -4,-2.7 4,-3.0 2,-0.2 3,-0.2 0.944 114.4 41.2 -53.8 -56.6 -2.8 4.9 -7.9 29 34 A I H X S+ 0 0 1 -4,-3.1 4,-2.9 1,-0.2 5,-0.4 0.945 112.8 55.9 -59.3 -44.2 -3.1 3.3 -4.5 30 35 A A H X>S+ 0 0 2 -4,-2.8 4,-2.7 -5,-0.3 5,-1.7 0.859 111.7 43.8 -56.6 -35.0 -1.1 6.3 -3.1 31 36 A H H <5S+ 0 0 132 -4,-2.5 -2,-0.2 -3,-0.2 -1,-0.2 0.939 111.8 52.1 -70.9 -50.5 -3.7 8.6 -4.6 32 37 A A H <5S+ 0 0 59 -4,-3.0 -2,-0.2 1,-0.2 -1,-0.2 0.846 124.1 30.3 -53.9 -37.3 -6.6 6.4 -3.4 33 38 A L H <5S- 0 0 7 -4,-2.9 -1,-0.2 -5,-0.2 -2,-0.2 0.897 104.5-130.5 -79.1 -48.7 -5.1 6.6 0.1 34 39 A S T <5 + 0 0 96 -4,-2.7 2,-0.3 -5,-0.4 -3,-0.2 0.913 57.0 133.9 72.7 72.4 -3.5 10.0 -0.1 35 40 A L < - 0 0 44 -5,-1.7 2,-0.4 -6,-0.0 -1,-0.3 -0.896 68.3 -99.4-134.7 169.3 0.1 9.2 1.1 36 41 A T - 0 0 100 -2,-0.3 2,-2.7 1,-0.1 -9,-0.1 -0.067 45.9-117.8 -92.0 33.3 3.4 10.2 -0.4 37 42 A E S >> S+ 0 0 33 -2,-0.4 4,-2.7 1,-0.2 3,-0.5 -0.363 109.2 71.3 74.3 -62.0 4.3 6.9 -2.3 38 43 A R H 3> S+ 0 0 172 -2,-2.7 4,-2.8 1,-0.3 -1,-0.2 0.885 97.7 51.5 -43.5 -51.6 7.4 6.3 -0.2 39 44 A Q H 3> S+ 0 0 48 2,-0.2 4,-3.1 1,-0.2 -1,-0.3 0.861 108.9 49.1 -58.4 -43.6 5.1 5.4 2.7 40 45 A I H <> S+ 0 0 0 -3,-0.5 4,-3.2 2,-0.2 -2,-0.2 0.924 111.7 48.8 -65.8 -46.5 3.1 2.9 0.6 41 46 A K H X S+ 0 0 91 -4,-2.7 4,-2.3 2,-0.2 -2,-0.2 0.951 114.5 45.5 -57.2 -52.6 6.3 1.2 -0.6 42 47 A I H X S+ 0 0 63 -4,-2.8 4,-3.0 2,-0.2 5,-0.3 0.947 113.5 49.7 -53.6 -52.8 7.5 1.0 3.0 43 48 A W H X S+ 0 0 34 -4,-3.1 4,-3.0 1,-0.2 -2,-0.2 0.932 110.7 50.9 -53.6 -49.2 4.1 -0.2 4.2 44 49 A F H X S+ 0 0 4 -4,-3.2 4,-0.7 2,-0.2 -1,-0.2 0.858 113.4 44.4 -58.6 -42.3 4.1 -2.9 1.5 45 50 A Q H >X S+ 0 0 111 -4,-2.3 3,-1.7 2,-0.2 4,-1.1 0.978 115.4 45.9 -67.5 -53.6 7.6 -4.1 2.4 46 51 A N H 3X S+ 0 0 93 -4,-3.0 4,-1.9 1,-0.3 -2,-0.2 0.872 102.7 66.9 -57.6 -37.5 6.9 -4.2 6.2 47 52 A R H 3< S+ 0 0 33 -4,-3.0 -1,-0.3 -5,-0.3 -2,-0.2 0.815 97.8 54.2 -50.4 -35.4 3.6 -5.9 5.5 48 53 A R H XX S+ 0 0 42 -3,-1.7 3,-2.0 -4,-0.7 4,-1.9 0.954 106.9 48.9 -64.6 -48.3 5.6 -8.9 4.3 49 54 A M H 3< S+ 0 0 138 -4,-1.1 -2,-0.2 1,-0.3 -1,-0.2 0.754 119.2 39.5 -68.4 -24.4 7.5 -9.1 7.5 50 55 A K T 3< S+ 0 0 130 -4,-1.9 -1,-0.3 2,-0.1 -2,-0.2 -0.120 109.0 64.6-111.7 26.3 4.2 -8.8 9.4 51 56 A W T X> S+ 0 0 81 -3,-2.0 4,-2.8 -5,-0.2 3,-1.9 0.686 102.0 44.9 -87.1 -61.2 2.4 -11.1 7.0 52 57 A K T 3< S+ 0 0 48 -4,-1.9 -2,-0.1 1,-0.3 -3,-0.1 0.543 111.2 52.0 -75.9 -6.6 4.4 -14.3 7.6 53 58 A K T 34 S+ 0 0 121 -5,-0.2 -1,-0.3 -4,-0.2 3,-0.1 0.547 116.5 40.7 -98.7 -6.6 4.3 -14.0 11.4 54 59 A E T <4 S+ 0 0 90 -3,-1.9 2,-2.6 1,-0.2 -2,-0.2 0.766 97.7 76.3-105.7 -39.4 0.5 -13.6 11.5 55 60 A N S < S+ 0 0 66 -4,-2.8 4,-0.2 2,-0.1 -1,-0.2 -0.465 74.0 145.1 -73.0 67.1 -0.2 -16.2 8.8 56 61 A K > + 0 0 77 -2,-2.6 2,-2.8 2,-0.1 3,-0.8 -0.192 41.9 43.8 -91.5-172.8 0.4 -19.0 11.3 57 62 A T T 3 S+ 0 0 135 1,-0.4 3,-0.3 2,-0.2 -2,-0.1 -0.367 129.6 34.1 67.3 -61.8 -1.3 -22.4 11.6 58 63 A K T 3 S+ 0 0 184 -2,-2.8 2,-2.1 1,-0.2 -1,-0.4 0.953 119.2 54.6 -67.1 -63.6 -1.0 -22.8 7.9 59 64 A G < + 0 0 13 -3,-0.8 -1,-0.2 1,-0.2 3,-0.2 -0.402 69.3 110.5 -85.4 65.3 2.3 -20.9 7.7 60 65 A E S S+ 0 0 107 -2,-2.1 2,-2.4 -3,-0.3 -1,-0.2 0.805 71.5 58.7 -86.6 -49.3 4.5 -22.8 10.1 61 66 A P 0 0 128 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 -0.390 360.0 360.0 -83.4 64.1 6.9 -24.5 7.6 62 67 A G 0 0 66 -2,-2.4 0, 0.0 -3,-0.2 0, 0.0 -0.137 360.0 360.0 111.3 360.0 7.9 -21.0 6.4