==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=12-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER CYTOKINE 15-NOV-97 1SDF . COMPND 2 MOLECULE: STROMAL CELL-DERIVED FACTOR-1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR M.P.CRUMP,K.RAJARATHNAM,I.CLARK-LEWIS,B.D.SYKES . 67 1 2 2 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5772.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 35 52.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 3.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 13 19.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 10.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 4.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 10 14.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A K 0 0 242 0, 0.0 5,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -52.1 36.6 -14.8 -1.4 2 2 A P - 0 0 66 0, 0.0 4,-0.1 0, 0.0 0, 0.0 0.965 360.0-102.4 -78.8 -79.4 39.1 -15.2 1.6 3 3 A V S S- 0 0 130 0, 0.0 3,-0.1 0, 0.0 0, 0.0 0.108 88.8 -18.2-178.8 -43.1 37.6 -13.5 4.7 4 4 A S S S+ 0 0 42 1,-0.1 2,-0.2 4,-0.0 0, 0.0 0.108 110.6 85.8-174.4 35.7 39.3 -10.2 5.3 5 5 A L S S+ 0 0 82 3,-0.1 -1,-0.1 2,-0.0 4,-0.0 -0.699 71.0 54.4-150.1 91.7 42.6 -10.1 3.3 6 6 A S S S+ 0 0 80 -2,-0.2 0, 0.0 3,-0.1 0, 0.0 -0.102 106.2 32.3-174.2 -72.9 42.4 -9.0 -0.4 7 7 A Y S S+ 0 0 127 26,-0.0 26,-0.3 24,-0.0 27,-0.2 0.807 106.5 83.6 -75.1 -30.1 40.8 -5.7 -1.2 8 8 A R S S- 0 0 118 1,-0.2 26,-0.2 25,-0.1 25,-0.1 0.179 105.7 -42.3 -59.3-172.7 42.0 -4.3 2.1 9 9 A a - 0 0 50 24,-0.2 -1,-0.2 1,-0.1 -3,-0.1 -0.291 48.3-154.7 -56.4 135.1 45.5 -2.8 2.6 10 10 A P S S+ 0 0 55 0, 0.0 2,-0.2 0, 0.0 -1,-0.1 0.808 73.9 76.8 -82.5 -30.7 48.2 -5.1 0.9 11 11 A b + 0 0 17 1,-0.2 3,-0.1 38,-0.0 28,-0.0 -0.547 45.0 160.0 -81.8 145.7 51.0 -3.9 3.2 12 12 A R + 0 0 158 1,-0.4 2,-0.4 -2,-0.2 -1,-0.2 0.580 65.0 36.9-129.8 -46.4 51.2 -5.3 6.7 13 13 A F - 0 0 167 2,-0.0 37,-0.8 0, 0.0 2,-0.5 -0.949 68.1-152.8-118.3 134.1 54.7 -4.8 8.0 14 14 A F B -a 50 0A 73 -2,-0.4 2,-1.2 35,-0.1 3,-0.2 -0.892 9.2-147.6-109.4 134.1 56.9 -1.8 7.2 15 15 A E > + 0 0 82 35,-2.3 3,-2.0 -2,-0.5 37,-0.2 -0.601 29.7 162.4 -97.4 73.2 60.6 -1.8 7.1 16 16 A S T 3 + 0 0 53 -2,-1.2 -1,-0.2 1,-0.3 35,-0.1 0.820 69.5 71.7 -60.4 -29.7 61.3 1.7 8.3 17 17 A H T 3 S+ 0 0 191 -3,-0.2 -1,-0.3 38,-0.1 -2,-0.1 0.740 79.4 107.2 -58.1 -21.3 64.9 0.6 9.1 18 18 A V < - 0 0 8 -3,-2.0 2,-0.3 3,-0.0 34,-0.1 -0.091 55.4-160.6 -56.1 158.3 65.3 0.5 5.3 19 19 A A >> - 0 0 36 38,-0.1 4,-1.5 37,-0.1 3,-0.7 -0.997 32.6-114.3-146.3 140.2 67.4 3.2 3.6 20 20 A R T 34 S+ 0 0 189 -2,-0.3 -1,-0.1 1,-0.2 -2,-0.0 0.761 114.3 64.8 -43.0 -29.2 67.6 4.5 0.0 21 21 A A T 34 S+ 0 0 96 1,-0.2 -1,-0.2 22,-0.0 -3,-0.0 0.983 111.0 30.5 -60.4 -60.7 71.1 3.1 0.0 22 22 A N T <4 S+ 0 0 46 -3,-0.7 21,-3.5 21,-0.1 22,-0.5 0.516 101.0 105.4 -78.3 -3.8 70.2 -0.6 0.4 23 23 A V E < -B 42 0A 17 -4,-1.5 19,-0.2 19,-0.2 3,-0.1 -0.613 49.6-171.6 -80.1 134.1 66.9 0.1 -1.4 24 24 A K E - 0 0 120 17,-3.3 2,-0.3 1,-0.3 18,-0.2 0.909 62.1 -15.0 -89.6 -53.2 67.0 -1.3 -5.0 25 25 A H E -B 41 0A 131 16,-1.3 16,-1.7 2,-0.0 2,-0.4 -0.947 58.9-126.2-148.0 167.8 63.7 0.1 -6.5 26 26 A L E +B 40 0A 38 -2,-0.3 2,-0.3 14,-0.2 14,-0.2 -0.937 25.2 170.2-122.8 144.8 60.5 1.7 -5.5 27 27 A K E -B 39 0A 146 12,-2.1 12,-2.4 -2,-0.4 2,-0.3 -0.976 14.5-151.8-147.5 157.0 56.9 0.7 -6.3 28 28 A I E -B 38 0A 79 -2,-0.3 2,-0.5 10,-0.3 10,-0.2 -0.951 7.7-144.2-133.2 153.7 53.4 1.7 -5.2 29 29 A L E -B 37 0A 70 8,-1.3 8,-1.1 -2,-0.3 2,-0.9 -0.948 12.3-147.6-122.0 112.7 50.0 0.0 -5.1 30 30 A N + 0 0 144 -2,-0.5 6,-0.1 6,-0.2 5,-0.1 -0.677 28.9 169.6 -81.8 105.8 46.9 2.1 -5.8 31 31 A T - 0 0 26 -2,-0.9 -23,-0.0 4,-0.5 -22,-0.0 -0.919 29.0-157.0-118.6 144.1 44.1 0.7 -3.7 32 32 A P S S+ 0 0 116 0, 0.0 -1,-0.1 0, 0.0 -24,-0.1 0.929 95.4 49.6 -82.9 -50.3 40.6 2.2 -3.1 33 33 A N S S+ 0 0 111 -26,-0.3 2,-0.2 -25,-0.1 -24,-0.2 0.772 124.6 31.0 -59.7 -25.5 39.7 0.6 0.2 34 34 A a S S- 0 0 32 -27,-0.2 -3,-0.1 -26,-0.2 2,-0.0 -0.629 89.5-100.8-123.1-177.0 43.1 1.8 1.4 35 35 A A - 0 0 75 -2,-0.2 2,-1.2 1,-0.1 -4,-0.5 -0.106 62.3 -57.7 -91.8-166.5 45.5 4.6 0.8 36 36 A L - 0 0 112 -6,-0.1 2,-1.0 -8,-0.1 -6,-0.2 -0.648 53.3-162.4 -81.0 99.6 48.7 4.7 -1.3 37 37 A Q E -B 29 0A 13 -2,-1.2 -8,-1.3 -8,-1.1 2,-0.5 -0.722 11.3-144.7 -85.6 104.7 50.8 1.9 0.2 38 38 A I E -B 28 0A 16 -2,-1.0 13,-1.1 13,-0.2 -10,-0.3 -0.578 20.2-168.8 -74.2 119.4 54.4 2.5 -1.0 39 39 A V E +BC 27 50A 4 -12,-2.4 -12,-2.1 -2,-0.5 2,-0.3 -0.473 6.9 178.5-100.1 173.2 56.1 -0.8 -1.6 40 40 A A E -BC 26 49A 3 9,-1.2 9,-2.0 -14,-0.2 2,-0.4 -0.950 26.5-123.9-161.2-179.8 59.8 -1.4 -2.3 41 41 A R E -BC 25 48A 127 -16,-1.7 -17,-3.3 7,-0.3 -16,-1.3 -0.927 23.4-148.3-143.4 112.6 62.6 -3.9 -2.9 42 42 A L E > -BC 23 47A 1 5,-2.4 5,-0.9 -2,-0.4 -19,-0.2 -0.415 3.8-155.8 -79.9 156.6 65.7 -4.1 -0.8 43 43 A K T 5S+ 0 0 115 -21,-3.5 -20,-0.1 3,-0.2 -1,-0.1 0.893 90.3 53.3 -94.1 -59.6 69.1 -5.1 -2.1 44 44 A N T 5S+ 0 0 141 -22,-0.5 -21,-0.1 1,-0.3 -1,-0.1 0.772 127.2 28.6 -48.9 -27.8 71.0 -6.4 1.0 45 45 A N T 5S- 0 0 87 -23,-0.3 -1,-0.3 2,-0.1 -2,-0.2 0.697 97.5-141.6-104.3 -29.4 67.9 -8.7 1.5 46 46 A N T 5 + 0 0 110 1,-0.2 2,-0.3 -4,-0.2 -3,-0.2 0.978 61.8 105.2 63.6 56.5 66.9 -9.0 -2.2 47 47 A R E - 0 0 46 -37,-0.2 3,-1.0 -2,-0.2 6,-0.1 -0.555 13.8-143.2 -79.0 141.0 57.6 3.9 5.9 53 53 A P T 3 S+ 0 0 68 0, 0.0 -1,-0.1 0, 0.0 9,-0.1 0.698 100.3 59.0 -76.0 -18.8 56.3 7.3 4.7 54 54 A K T 3 S+ 0 0 182 5,-0.0 5,-0.1 4,-0.0 -2,-0.0 0.242 79.4 129.7 -93.5 13.7 57.9 9.1 7.6 55 55 A L <> - 0 0 25 -3,-1.0 4,-1.1 1,-0.1 5,-0.1 -0.214 66.2-123.7 -65.4 159.2 61.4 7.9 6.6 56 56 A K H > S+ 0 0 172 2,-0.2 4,-0.5 1,-0.2 -1,-0.1 0.875 110.8 34.7 -73.4 -39.1 64.2 10.4 6.3 57 57 A W H > S+ 0 0 38 1,-0.2 4,-1.3 2,-0.2 -1,-0.2 0.781 119.0 51.5 -86.2 -27.4 65.1 9.6 2.7 58 58 A I H > S+ 0 0 0 2,-0.2 4,-3.7 1,-0.2 5,-0.3 0.716 98.0 66.7 -81.1 -19.3 61.5 8.9 1.7 59 59 A Q H X S+ 0 0 97 -4,-1.1 4,-0.8 1,-0.2 -1,-0.2 0.863 106.9 41.8 -68.4 -30.6 60.3 12.2 3.2 60 60 A E H X S+ 0 0 133 -4,-0.5 4,-1.8 2,-0.2 5,-0.2 0.849 117.5 47.7 -80.1 -35.4 62.3 13.9 0.5 61 61 A Y H X S+ 0 0 58 -4,-1.3 4,-3.6 2,-0.2 5,-0.3 0.946 113.2 46.0 -68.9 -50.2 61.2 11.4 -2.1 62 62 A L H X S+ 0 0 49 -4,-3.7 4,-1.9 1,-0.2 5,-0.4 0.805 109.7 58.9 -63.0 -28.2 57.5 11.6 -1.2 63 63 A E H X S+ 0 0 130 -4,-0.8 4,-1.4 -5,-0.3 -1,-0.2 0.935 118.6 26.7 -66.8 -48.0 57.9 15.4 -1.1 64 64 A K H < S+ 0 0 155 -4,-1.8 -2,-0.2 2,-0.2 -1,-0.2 0.793 122.0 54.9 -85.2 -30.4 59.0 15.6 -4.8 65 65 A A H < S+ 0 0 51 -4,-3.6 -3,-0.2 -5,-0.2 -2,-0.2 0.878 115.8 38.4 -69.7 -38.0 57.2 12.5 -5.8 66 66 A L H < 0 0 112 -4,-1.9 -3,-0.2 -5,-0.3 -2,-0.2 0.983 360.0 360.0 -75.4 -64.6 53.9 13.7 -4.5 67 67 A N < 0 0 178 -4,-1.4 -1,-0.2 -5,-0.4 0, 0.0 -0.825 360.0 360.0 -93.4 360.0 54.1 17.4 -5.4