==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=5-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER CYTOKINE 07-MAR-98 2SDF . COMPND 2 MOLECULE: STROMAL CELL-DERIVED FACTOR-1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR M.P.CRUMP,K.RAJARATHNAM,I.CLARK-LEWIS,B.D.SYKES . 67 1 2 2 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5682.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 33 49.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 3.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 13 19.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 10.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 4.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 8 11.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A K 0 0 243 0, 0.0 2,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 153.3 -8.8 -16.4 15.9 2 2 A P - 0 0 125 0, 0.0 2,-0.2 0, 0.0 0, 0.0 -0.160 360.0 -95.3 -83.3-178.9 -10.1 -17.3 12.4 3 3 A V - 0 0 137 1,-0.2 3,-0.1 -2,-0.0 0, 0.0 -0.614 40.5 -98.3 -98.2 159.6 -9.1 -15.9 9.0 4 4 A S - 0 0 83 -2,-0.2 -1,-0.2 1,-0.1 3,-0.0 0.094 58.8 -64.5 -62.4-176.8 -10.8 -13.2 7.0 5 5 A L S S- 0 0 156 1,-0.0 -1,-0.1 0, 0.0 0, 0.0 0.156 74.2 -64.2 -59.2-174.7 -13.3 -13.9 4.2 6 6 A S - 0 0 71 1,-0.1 2,-0.4 -3,-0.1 -1,-0.0 0.273 60.7 -96.1 -58.2-165.4 -12.2 -15.6 0.9 7 7 A Y + 0 0 180 1,-0.1 -1,-0.1 -3,-0.0 5,-0.1 -0.979 65.3 119.1-126.8 134.2 -9.7 -14.0 -1.5 8 8 A R + 0 0 194 -2,-0.4 -1,-0.1 3,-0.2 26,-0.1 0.329 51.9 87.5-153.0 -48.2 -10.5 -11.9 -4.6 9 9 A a S S- 0 0 40 1,-0.1 -1,-0.2 2,-0.1 0, 0.0 -0.158 78.3-122.0 -59.7 158.6 -9.0 -8.4 -4.2 10 10 A P S S+ 0 0 58 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 0.936 96.5 55.3 -70.7 -45.8 -5.4 -7.9 -5.3 11 11 A b + 0 0 5 1,-0.2 -3,-0.2 18,-0.1 3,-0.1 -0.674 52.7 144.1 -90.7 143.2 -4.2 -6.6 -1.9 12 12 A R + 0 0 95 1,-0.4 2,-0.5 -2,-0.3 -1,-0.2 0.466 63.6 44.8-140.4 -49.2 -4.7 -8.7 1.2 13 13 A F - 0 0 162 2,-0.0 37,-0.5 0, 0.0 2,-0.5 -0.911 66.6-160.0-110.6 131.0 -1.8 -8.3 3.5 14 14 A F B -a 50 0A 79 -2,-0.5 2,-0.7 -3,-0.1 37,-0.2 -0.932 5.9-163.3-114.0 131.0 -0.3 -4.9 4.2 15 15 A E > - 0 0 33 35,-1.3 3,-0.9 -2,-0.5 37,-0.3 -0.908 7.0-178.6-114.1 105.5 3.2 -4.2 5.6 16 16 A S T 3 + 0 0 52 -2,-0.7 -1,-0.1 1,-0.2 35,-0.1 0.583 66.8 90.7 -78.1 -9.8 3.5 -0.7 7.0 17 17 A H T 3 + 0 0 141 38,-0.1 -1,-0.2 2,-0.0 34,-0.1 0.799 68.1 103.7 -55.9 -26.1 7.2 -1.2 7.9 18 18 A V < - 0 0 3 -3,-0.9 2,-0.3 3,-0.1 34,-0.1 -0.040 56.3-163.4 -53.4 159.1 7.8 0.1 4.4 19 19 A A >> - 0 0 36 38,-0.1 4,-1.4 36,-0.1 3,-0.8 -0.992 34.4-113.5-150.1 141.0 9.1 3.7 3.9 20 20 A R T 34 S+ 0 0 183 -2,-0.3 -1,-0.1 1,-0.3 -2,-0.0 0.763 116.0 62.4 -43.8 -29.0 9.3 6.0 0.9 21 21 A A T 34 S+ 0 0 96 1,-0.2 -1,-0.3 22,-0.0 -3,-0.1 0.970 112.0 31.6 -63.7 -55.8 13.0 5.7 1.2 22 22 A N T <4 S+ 0 0 30 -3,-0.8 21,-3.1 21,-0.1 23,-0.3 0.459 99.3 107.7 -83.0 -0.4 13.2 1.9 0.6 23 23 A V E < -B 42 0A 20 -4,-1.4 19,-0.3 19,-0.2 3,-0.1 -0.606 49.4-169.1 -80.8 137.0 10.1 2.2 -1.7 24 24 A K E - 0 0 82 17,-3.6 2,-0.3 1,-0.3 18,-0.2 0.918 63.2 -17.7 -89.3 -55.9 10.9 1.8 -5.4 25 25 A H E -B 41 0A 132 16,-1.2 16,-1.6 2,-0.0 -1,-0.3 -0.994 59.9-122.6-153.0 154.1 7.6 2.8 -7.1 26 26 A L E +B 40 0A 55 -2,-0.3 2,-0.3 14,-0.2 14,-0.2 -0.746 28.8 172.4-101.4 148.4 4.0 3.3 -6.3 27 27 A K E -B 39 0A 100 12,-2.3 12,-2.3 -2,-0.3 2,-0.3 -0.992 11.6-161.9-151.4 150.4 1.1 1.5 -8.0 28 28 A I E -B 38 0A 78 -2,-0.3 2,-0.5 10,-0.3 10,-0.2 -0.990 12.1-141.0-138.0 146.4 -2.7 1.2 -7.4 29 29 A L E -B 37 0A 68 8,-1.6 2,-1.0 -2,-0.3 8,-1.0 -0.923 3.3-155.5-110.5 123.8 -5.4 -1.1 -8.6 30 30 A N + 0 0 133 -2,-0.5 6,-0.1 6,-0.1 -1,-0.0 -0.329 30.2 172.5 -91.4 53.2 -8.8 0.2 -9.6 31 31 A T - 0 0 33 -2,-1.0 -22,-0.0 4,-0.4 -2,-0.0 -0.320 26.2-151.8 -61.9 143.1 -10.6 -3.0 -8.9 32 32 A P S S+ 0 0 127 0, 0.0 -1,-0.1 0, 0.0 4,-0.0 0.928 94.3 49.3 -82.7 -50.0 -14.4 -2.8 -9.1 33 33 A N S S+ 0 0 133 -25,-0.1 2,-0.2 2,-0.0 -24,-0.1 0.763 122.0 38.6 -60.6 -24.8 -15.3 -5.6 -6.7 34 34 A a S S- 0 0 17 1,-0.2 3,-0.1 -26,-0.1 0, 0.0 -0.734 89.8-105.3-122.0 171.6 -12.9 -4.0 -4.3 35 35 A A - 0 0 72 -2,-0.2 2,-1.1 1,-0.1 -4,-0.4 -0.017 61.0 -58.2 -82.3-168.1 -11.9 -0.5 -3.3 36 36 A L - 0 0 105 -6,-0.1 2,-0.7 -8,-0.1 -6,-0.1 -0.638 57.4-171.8 -79.3 99.8 -8.8 1.4 -4.2 37 37 A Q E -B 29 0A 33 -2,-1.1 -8,-1.6 -8,-1.0 2,-0.6 -0.840 16.0-140.7 -97.5 111.2 -6.0 -0.8 -2.8 38 38 A I E -B 28 0A 18 -2,-0.7 13,-1.0 13,-0.2 -10,-0.3 -0.603 23.5-173.8 -76.6 119.0 -2.6 1.0 -3.0 39 39 A V E +BC 27 50A 1 -12,-2.3 -12,-2.3 -2,-0.6 2,-0.3 -0.498 4.2 177.6-103.5 173.7 0.1 -1.4 -4.0 40 40 A A E -BC 26 49A 0 9,-2.7 9,-2.1 -14,-0.2 2,-0.4 -0.947 26.9-119.7-161.7-179.1 3.9 -0.8 -4.3 41 41 A R E -BC 25 48A 102 -16,-1.6 -17,-3.6 7,-0.3 -16,-1.2 -0.952 24.8-145.8-141.3 115.9 7.3 -2.2 -4.9 42 42 A L E > -BC 23 47A 0 5,-3.1 5,-1.0 -2,-0.4 -19,-0.2 -0.356 3.8-158.2 -79.0 160.7 10.1 -2.2 -2.4 43 43 A K T 5S+ 0 0 91 -21,-3.1 -1,-0.1 3,-0.2 -20,-0.1 0.843 89.0 40.1-100.0 -74.3 13.8 -1.8 -3.1 44 44 A N T 5S+ 0 0 147 -22,-0.3 -21,-0.1 1,-0.3 -2,-0.0 0.788 130.4 37.0 -48.7 -28.1 15.9 -3.2 -0.3 45 45 A N T 5S- 0 0 91 -23,-0.3 -1,-0.3 2,-0.1 -2,-0.1 0.772 100.2-148.7 -93.4 -33.2 13.4 -6.0 -0.3 46 46 A N T 5 + 0 0 94 1,-0.2 2,-0.3 -5,-0.0 -3,-0.2 0.996 53.5 94.8 60.2 77.0 12.9 -6.0 -4.1 47 47 A R E - 0 0 29 -37,-0.3 3,-1.0 -2,-0.2 6,-0.2 -0.580 12.5-147.3 -78.9 137.4 -0.6 1.1 4.5 53 53 A P T 3 S+ 0 0 62 0, 0.0 9,-0.1 0, 0.0 -1,-0.1 0.758 98.8 61.0 -74.9 -23.8 -2.7 4.3 3.9 54 54 A K T 3 S+ 0 0 166 4,-0.0 5,-0.1 5,-0.0 -2,-0.0 0.460 80.8 125.6 -81.1 -0.4 -2.2 5.3 7.6 55 55 A L <> - 0 0 18 -3,-1.0 4,-0.8 1,-0.1 -36,-0.1 -0.053 68.6-124.4 -55.4 161.1 1.6 5.4 6.9 56 56 A K T 4 S+ 0 0 170 2,-0.2 4,-0.5 1,-0.1 -1,-0.1 0.860 109.1 35.0 -78.5 -38.2 3.5 8.6 7.8 57 57 A W T > S+ 0 0 48 2,-0.2 4,-1.3 1,-0.2 3,-0.4 0.815 119.1 50.2 -86.3 -31.0 5.0 9.2 4.4 58 58 A I H > S+ 0 0 0 1,-0.2 4,-3.7 2,-0.2 5,-0.3 0.713 98.0 68.7 -79.0 -18.1 2.0 7.8 2.5 59 59 A Q H X S+ 0 0 98 -4,-0.8 4,-0.8 1,-0.2 -1,-0.2 0.853 105.2 42.4 -67.4 -29.4 -0.3 10.0 4.5 60 60 A E H > S+ 0 0 137 -4,-0.5 4,-1.5 -3,-0.4 -1,-0.2 0.865 116.2 48.5 -80.1 -37.5 1.3 13.0 2.7 61 61 A Y H X S+ 0 0 62 -4,-1.3 4,-3.2 2,-0.2 3,-0.4 0.951 113.2 45.9 -65.2 -51.0 1.2 11.1 -0.7 62 62 A L H X S+ 0 0 47 -4,-3.7 4,-2.0 1,-0.2 -1,-0.2 0.800 110.3 56.5 -62.7 -28.2 -2.4 10.1 -0.3 63 63 A E H < S+ 0 0 110 -4,-0.8 -1,-0.2 -5,-0.3 -2,-0.2 0.840 113.5 38.7 -72.3 -33.1 -3.1 13.7 0.8 64 64 A K H < S+ 0 0 182 -4,-1.5 -2,-0.2 -3,-0.4 3,-0.2 0.838 114.8 53.1 -84.2 -36.6 -1.7 15.0 -2.5 65 65 A A H < S- 0 0 49 -4,-3.2 2,-0.2 1,-0.3 -2,-0.2 0.900 134.3 -27.3 -65.2 -41.0 -3.1 12.2 -4.6 66 66 A L < 0 0 111 -4,-2.0 -1,-0.3 -5,-0.2 -2,-0.1 -0.773 360.0 360.0-177.9 129.5 -6.6 12.8 -3.3 67 67 A N 0 0 184 -2,-0.2 -4,-0.1 -3,-0.2 -3,-0.1 0.340 360.0 360.0-136.9 360.0 -8.1 14.2 -0.2