==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL PROTEIN 29-FEB-04 1SIF . COMPND 2 MOLECULE: UBIQUITIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR C.G.BENITEZ-CARDOZA,K.STOTT,M.HIRSHBERG,H.M.WENT,D.N.WOOLFSO . 71 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4295.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 48 67.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 5 7.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 15 21.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 8.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 12.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 10 14.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A L 0 0 80 0, 0.0 16,-2.9 0, 0.0 2,-0.7 0.000 360.0 360.0 360.0 -91.5 17.1 16.5 20.8 2 2 A Q E -A 16 0A 86 14,-0.2 62,-2.9 12,-0.1 2,-0.4 -0.613 360.0-172.5 -72.7 111.7 19.3 19.4 19.3 3 3 A L E -A 15 0A 0 12,-3.1 12,-1.6 -2,-0.7 2,-0.5 -0.858 19.1-142.1-107.1 142.1 18.1 20.1 15.7 4 4 A F E -Ab 14 66A 60 61,-2.5 63,-2.6 -2,-0.4 2,-0.5 -0.883 14.8-164.0 -97.3 126.9 19.7 22.4 13.1 5 5 A I E -Ab 13 67A 0 8,-3.4 8,-2.1 -2,-0.5 2,-0.5 -0.977 6.5-165.3-113.4 122.1 17.1 24.2 11.1 6 6 A K E -Ab 12 68A 26 61,-3.1 63,-3.1 -2,-0.5 6,-0.2 -0.939 2.3-159.5-111.1 128.7 18.6 25.8 7.9 7 7 A T E > - b 0 69A 14 4,-2.5 3,-0.9 -2,-0.5 63,-0.2 -0.481 31.4-114.2 -92.3 170.4 16.7 28.4 5.9 8 8 A L T 3 S+ 0 0 138 61,-0.6 62,-0.1 1,-0.2 -1,-0.1 0.674 112.2 71.0 -80.6 -13.0 17.5 29.2 2.2 9 9 A T T 3 S- 0 0 125 2,-0.1 -1,-0.2 1,-0.0 -3,-0.0 0.406 121.5-104.2 -81.4 4.6 18.6 32.7 3.2 10 10 A G S < S+ 0 0 66 -3,-0.9 2,-0.5 1,-0.3 -2,-0.1 0.536 77.5 136.7 84.7 7.4 21.7 31.0 4.8 11 11 A K - 0 0 109 2,-0.0 -4,-2.5 0, 0.0 2,-0.4 -0.769 32.9-168.0 -86.2 125.2 20.5 31.3 8.5 12 12 A T E +A 6 0A 83 -2,-0.5 2,-0.3 -6,-0.2 -6,-0.2 -0.930 11.6 168.5-101.6 143.1 20.9 28.3 10.8 13 13 A F E -A 5 0A 16 -8,-2.1 -8,-3.4 -2,-0.4 2,-0.3 -0.947 23.6-129.0-140.9 170.5 19.2 28.2 14.1 14 14 A T E -A 4 0A 40 -2,-0.3 2,-0.3 -10,-0.2 -10,-0.2 -0.862 16.5-174.8-121.4 143.1 18.7 25.4 16.6 15 15 A V E -A 3 0A 12 -12,-1.6 -12,-3.1 -2,-0.3 2,-0.5 -0.980 22.4-131.4-125.8 155.1 15.7 24.0 18.5 16 16 A E E +A 2 0A 151 -2,-0.3 2,-0.3 -14,-0.2 -14,-0.2 -0.872 37.8 160.1-103.5 126.5 15.6 21.2 21.2 17 17 A M - 0 0 7 -16,-2.9 -2,-0.0 -2,-0.5 3,-0.0 -0.831 36.6-123.9-131.9 171.0 13.0 18.5 20.7 18 18 A E > - 0 0 113 -2,-0.3 3,-1.8 4,-0.1 38,-0.3 -0.904 30.0-119.3-106.8 152.9 12.3 14.9 21.8 19 19 A P T 3 S+ 0 0 63 0, 0.0 38,-2.5 0, 0.0 37,-0.4 0.812 113.7 59.6 -63.6 -26.2 11.8 12.2 19.1 20 20 A S T 3 S+ 0 0 84 36,-0.2 2,-0.1 35,-0.2 -3,-0.0 0.499 82.9 108.5 -76.4 -4.0 8.2 11.6 20.3 21 21 A D S < S- 0 0 36 -3,-1.8 35,-2.1 1,-0.1 36,-0.2 -0.418 71.7-119.3 -68.4 152.0 7.2 15.3 19.6 22 22 A T B > -E 55 0B 45 33,-0.2 4,-2.1 1,-0.1 33,-0.3 -0.440 18.3-112.5 -90.2 165.7 5.0 15.8 16.6 23 23 A I H > S+ 0 0 0 31,-2.1 4,-2.6 28,-0.4 29,-0.2 0.885 118.6 55.4 -62.2 -36.3 5.8 17.8 13.6 24 24 A E H > S+ 0 0 82 30,-0.3 4,-1.9 28,-0.3 -1,-0.2 0.853 106.7 51.6 -69.8 -27.5 3.1 20.4 14.5 25 25 A N H > S+ 0 0 70 2,-0.2 4,-1.8 -3,-0.2 -1,-0.2 0.918 106.7 53.0 -76.1 -38.6 4.9 20.8 17.9 26 26 A L H X S+ 0 0 0 -4,-2.1 4,-2.3 1,-0.2 -2,-0.2 0.944 109.5 49.4 -55.0 -45.4 8.2 21.3 16.1 27 27 A K H X S+ 0 0 22 -4,-2.6 4,-2.4 1,-0.2 -1,-0.2 0.870 106.7 54.4 -64.1 -39.2 6.6 24.1 14.1 28 28 A A H X S+ 0 0 41 -4,-1.9 4,-2.0 2,-0.2 -1,-0.2 0.844 109.5 49.1 -63.6 -34.9 5.1 25.7 17.2 29 29 A K H X S+ 0 0 31 -4,-1.8 4,-2.3 2,-0.2 -2,-0.2 0.887 109.6 50.4 -66.8 -39.5 8.7 25.8 18.6 30 30 A I H X>S+ 0 0 0 -4,-2.3 4,-3.1 2,-0.2 6,-0.6 0.896 110.9 50.1 -66.5 -39.9 10.1 27.3 15.4 31 31 A Q H X5S+ 0 0 79 -4,-2.4 4,-2.2 3,-0.2 -1,-0.2 0.933 113.0 46.3 -58.5 -45.5 7.2 29.9 15.7 32 32 A D H <5S+ 0 0 136 -4,-2.0 -2,-0.2 1,-0.2 -1,-0.2 0.874 120.6 40.0 -60.9 -41.0 8.3 30.6 19.3 33 33 A K H <5S+ 0 0 113 -4,-2.3 -2,-0.2 1,-0.1 -1,-0.2 0.897 135.1 12.6 -77.0 -45.3 11.9 30.8 18.3 34 34 A E H <5S- 0 0 56 -4,-3.1 -3,-0.2 -5,-0.2 -2,-0.2 0.446 92.8-117.4-124.1 -9.1 11.8 32.7 15.0 35 35 A G << + 0 0 53 -4,-2.2 -4,-0.2 -5,-0.6 -3,-0.1 0.526 63.7 141.3 87.4 3.0 8.3 34.2 14.7 36 36 A I - 0 0 30 -6,-0.6 -1,-0.2 -9,-0.1 -2,-0.1 -0.719 53.2-125.5 -87.2 119.9 7.4 32.2 11.6 37 37 A P > - 0 0 42 0, 0.0 3,-1.8 0, 0.0 4,-0.2 -0.282 23.8-113.6 -63.0 149.7 3.7 31.1 11.7 38 38 A P G > S+ 0 0 51 0, 0.0 3,-1.6 0, 0.0 -10,-0.0 0.825 112.3 58.8 -60.6 -34.8 3.3 27.3 11.2 39 39 A D G 3 S+ 0 0 138 1,-0.3 -3,-0.0 3,-0.0 -12,-0.0 0.533 103.3 52.8 -75.0 -2.6 1.4 27.5 7.9 40 40 A Q G < S+ 0 0 103 -3,-1.8 2,-0.6 31,-0.1 -1,-0.3 0.391 93.2 94.6-103.3 1.2 4.4 29.4 6.3 41 41 A Q < + 0 0 4 -3,-1.6 2,-0.5 -4,-0.2 30,-0.2 -0.832 47.3 178.6 -97.3 121.6 6.8 26.6 7.5 42 42 A R E -C 70 0A 91 28,-1.6 28,-2.8 -2,-0.6 2,-0.5 -0.971 14.0-162.1-115.1 122.9 7.7 23.8 5.1 43 43 A L E -C 69 0A 1 -2,-0.5 7,-2.7 7,-0.4 2,-0.4 -0.848 6.0-170.5-111.5 130.0 10.1 21.5 6.7 44 44 A I E +CD 68 49A 40 24,-2.2 24,-2.9 -2,-0.5 2,-0.4 -0.939 8.5 179.1-120.7 133.1 12.2 19.1 4.6 45 45 A F E > S- D 0 48A 45 3,-2.3 3,-1.7 -2,-0.4 2,-0.5 -0.987 78.6 -12.1-134.7 129.6 14.4 16.2 5.9 46 46 A A T 3 S- 0 0 81 -2,-0.4 22,-0.1 20,-0.3 -2,-0.1 -0.772 130.4 -51.6 72.7-127.6 16.2 14.0 3.3 47 47 A G T 3 S+ 0 0 74 -2,-0.5 2,-0.4 -3,-0.1 -1,-0.2 -0.026 117.4 109.8-117.6 28.8 14.2 15.4 0.5 48 48 A K E < -D 45 0A 127 -3,-1.7 -3,-2.3 0, 0.0 2,-0.4 -0.890 67.0-125.8-116.6 137.2 10.9 14.8 2.1 49 49 A Q E -D 44 0A 114 -2,-0.4 2,-0.3 -5,-0.2 -5,-0.2 -0.580 27.3-127.0 -77.8 130.2 8.4 17.2 3.6 50 50 A L - 0 0 2 -7,-2.7 -7,-0.4 -2,-0.4 2,-0.4 -0.575 24.3-147.8 -78.6 137.8 7.4 16.5 7.2 51 51 A E > - 0 0 127 -2,-0.3 3,-1.7 4,-0.1 -28,-0.4 -0.834 19.9-123.3-112.6 142.5 3.7 16.2 7.8 52 52 A D T 3 S+ 0 0 70 -2,-0.4 -28,-0.3 1,-0.3 -29,-0.2 0.716 102.3 75.1 -57.8 -20.2 1.7 17.1 10.9 53 53 A G T 3 S+ 0 0 84 -31,-0.1 -1,-0.3 -30,-0.1 2,-0.1 0.802 96.3 56.0 -51.2 -21.1 0.3 13.6 11.2 54 54 A R S < S- 0 0 43 -3,-1.7 -31,-2.1 1,-0.1 -30,-0.3 -0.391 72.3-114.4-123.9 175.5 3.6 12.3 12.6 55 55 A T B -E 22 0B 30 -33,-0.3 4,-0.5 -2,-0.1 3,-0.4 -0.680 38.2-109.1-110.2 164.4 6.5 12.4 15.1 56 56 A L S > >S+ 0 0 2 -35,-2.1 5,-1.7 -37,-0.4 3,-1.6 0.902 119.8 58.5 -56.6 -39.6 10.1 13.2 14.6 57 57 A S G > 5S+ 0 0 61 -38,-2.5 3,-2.1 1,-0.3 -1,-0.2 0.822 92.3 67.9 -59.2 -34.4 10.9 9.5 15.1 58 58 A D G 3 5S+ 0 0 96 -3,-0.4 -1,-0.3 -39,-0.3 -2,-0.2 0.730 104.8 43.7 -59.7 -25.6 8.6 8.6 12.2 59 59 A Y G < 5S- 0 0 25 -3,-1.6 -1,-0.3 -4,-0.5 -2,-0.2 0.226 114.8-113.1-100.1 8.1 11.2 10.3 10.0 60 60 A N T < 5 + 0 0 134 -3,-2.1 2,-0.3 1,-0.2 -3,-0.2 0.795 56.2 168.6 63.4 21.5 14.3 8.8 11.6 61 61 A I < + 0 0 11 -5,-1.7 -1,-0.2 -42,-0.1 2,-0.2 -0.582 9.2 177.9 -68.1 135.7 15.2 12.3 12.9 62 62 A Q > - 0 0 144 -2,-0.3 3,-2.0 1,-0.1 -1,-0.0 -0.688 39.5 -53.7-131.6 175.4 18.1 12.1 15.4 63 63 A K T 3 S+ 0 0 96 1,-0.3 -60,-0.2 -2,-0.2 -1,-0.1 -0.329 124.9 8.6 -54.0 134.1 20.3 14.4 17.6 64 64 A E T 3 S+ 0 0 98 -62,-2.9 -1,-0.3 1,-0.2 -61,-0.2 0.524 86.8 151.2 68.6 9.8 21.9 17.0 15.3 65 65 A S < - 0 0 18 -3,-2.0 -61,-2.5 -63,-0.2 2,-0.4 -0.364 41.8-129.9 -56.1 149.9 20.0 16.2 12.2 66 66 A T E -b 4 0A 64 -63,-0.2 2,-0.3 -61,-0.0 -20,-0.3 -0.933 22.1-169.8-106.0 129.8 19.6 19.2 9.9 67 67 A L E -b 5 0A 0 -63,-2.6 -61,-3.1 -2,-0.4 2,-0.5 -0.894 19.5-128.7-113.0 147.5 16.1 20.1 8.5 68 68 A H E -bC 6 44A 86 -24,-2.9 -24,-2.2 -2,-0.3 2,-0.6 -0.839 14.3-152.1 -95.3 133.9 15.5 22.6 5.8 69 69 A L E -bC 7 43A 1 -63,-3.1 -61,-0.6 -2,-0.5 2,-0.5 -0.931 10.3-171.6-106.0 119.4 13.0 25.4 6.4 70 70 A V E C 0 42A 39 -28,-2.8 -28,-1.6 -2,-0.6 -63,-0.0 -0.948 360.0 360.0-112.6 123.4 11.4 26.7 3.3 71 71 A L 0 0 86 -2,-0.5 -30,-0.2 -30,-0.2 -31,-0.1 -0.624 360.0 360.0-108.3 360.0 9.2 29.8 3.9