==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=12-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER LIPID BINDING PROTEIN 02-MAR-04 1SIY . COMPND 2 MOLECULE: NONSPECIFIC LIPID-TRANSFER PROTEIN 1; . SOURCE 2 ORGANISM_SCIENTIFIC: VIGNA RADIATA VAR. RADIATA; . AUTHOR K.F.LIN,Y.N.LIU,S.T.D.HSU,D.SAMUEL,C.S.CHENG,A.M.J.J.BONVIN, . 91 1 4 4 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4964.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 61 67.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 6.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 13 14.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 34 37.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 5 5.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 3 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 65 0, 0.0 2,-0.3 0, 0.0 43,-0.1 0.000 360.0 360.0 360.0 128.8 11.7 -0.3 4.8 2 2 A T >> - 0 0 91 41,-0.1 4,-1.3 45,-0.0 3,-0.6 -0.863 360.0-104.1-129.1 172.7 10.1 -0.0 8.1 3 3 A a T 34 S+ 0 0 75 -2,-0.3 4,-0.0 1,-0.2 44,-0.0 0.294 125.4 58.0 -79.8 13.5 6.5 -0.6 9.2 4 4 A G T 3> S+ 0 0 41 2,-0.1 4,-1.7 3,-0.1 -1,-0.2 0.589 94.7 61.2-108.9 -23.8 6.4 3.2 9.2 5 5 A Q T <4 S+ 0 0 54 -3,-0.6 4,-0.3 2,-0.2 -2,-0.2 0.922 105.9 47.8 -63.7 -45.8 7.4 3.5 5.6 6 6 A V T >X S+ 0 0 0 -4,-1.3 4,-2.7 1,-0.2 3,-1.0 0.809 104.5 62.3 -64.2 -30.5 4.2 1.6 4.8 7 7 A Q H 3>>S+ 0 0 85 1,-0.3 4,-3.1 2,-0.2 5,-0.7 0.934 96.2 56.6 -61.9 -42.9 2.4 3.9 7.1 8 8 A G H 3<5S+ 0 0 31 -4,-1.7 -1,-0.3 3,-0.2 22,-0.2 0.628 113.0 45.6 -65.4 -10.2 3.4 6.8 4.9 9 9 A N H <>5S+ 0 0 1 -3,-1.0 4,-1.3 -4,-0.3 3,-0.3 0.875 126.3 22.6 -85.8 -68.5 1.6 4.8 2.2 10 10 A L H X5S+ 0 0 1 -4,-2.7 4,-2.4 1,-0.2 -3,-0.2 0.794 116.0 62.6 -78.4 -29.6 -1.6 3.7 3.9 11 11 A A H <5S+ 0 0 42 -4,-3.1 4,-0.4 -5,-0.4 -1,-0.2 0.846 108.2 45.6 -66.4 -31.1 -1.9 6.3 6.6 12 12 A Q H >4X S+ 0 0 0 -4,-1.3 4,-4.1 1,-0.2 3,-1.7 0.742 92.6 81.4 -77.1 -23.7 -4.7 6.9 1.9 14 14 A I H 3X>S+ 0 0 47 -4,-2.4 4,-2.9 1,-0.3 5,-1.2 0.835 79.2 69.8 -49.5 -34.9 -6.7 6.1 5.0 15 15 A G H <45S+ 0 0 35 -3,-0.7 6,-0.9 -4,-0.4 7,-0.7 0.201 120.8 16.7 -76.0 20.2 -8.3 9.5 4.6 16 16 A F H <45S+ 0 0 27 -3,-1.7 -2,-0.2 4,-0.2 -1,-0.2 0.222 121.3 63.0-146.7 -43.9 -10.0 8.1 1.6 17 17 A L H <5S+ 0 0 6 -4,-4.1 45,-1.5 2,-0.2 48,-0.3 0.878 123.8 21.0 -50.9 -46.2 -9.6 4.4 2.1 18 18 A Q T <5S+ 0 0 64 -4,-2.9 2,-0.5 1,-0.3 -3,-0.2 0.886 144.9 20.7 -90.9 -53.5 -11.7 4.6 5.2 19 19 A K S - 0 0 37 0, 0.0 4,-1.8 0, 0.0 3,-0.1 -0.409 30.4-111.7 -76.9 159.4 -4.3 13.6 -2.2 25 25 A P H > S+ 0 0 104 0, 0.0 4,-0.9 0, 0.0 -2,-0.0 0.420 117.4 65.0 -69.3 5.0 -0.8 13.6 -4.0 26 26 A S H > S+ 0 0 56 2,-0.2 4,-3.0 3,-0.1 5,-0.2 0.902 100.0 44.1 -90.6 -56.6 0.4 12.4 -0.6 27 27 A b H > S+ 0 0 1 -15,-0.3 4,-2.8 2,-0.2 5,-0.2 0.948 116.7 49.2 -49.9 -53.6 -1.4 9.1 -0.5 28 28 A c H X S+ 0 0 27 -4,-1.8 4,-3.3 1,-0.2 5,-0.3 0.947 111.3 48.8 -52.5 -54.1 -0.3 8.5 -4.2 29 29 A T H X S+ 0 0 89 -4,-0.9 4,-1.9 1,-0.2 -1,-0.2 0.900 112.8 46.8 -56.8 -45.6 3.3 9.4 -3.4 30 30 A G H X S+ 0 0 9 -4,-3.0 4,-2.5 -22,-0.2 -21,-0.2 0.897 114.5 47.6 -65.2 -40.8 3.5 7.1 -0.4 31 31 A V H X S+ 0 0 0 -4,-2.8 4,-1.8 -22,-0.3 -2,-0.2 0.970 114.5 44.7 -61.3 -54.3 1.8 4.3 -2.3 32 32 A K H X>S+ 0 0 83 -4,-3.3 4,-3.4 1,-0.2 5,-1.5 0.797 111.9 57.1 -62.2 -27.3 4.1 4.7 -5.3 33 33 A N H <5S+ 0 0 57 -4,-1.9 5,-0.3 -5,-0.3 -2,-0.2 0.972 108.2 42.7 -66.9 -55.4 7.0 5.0 -2.9 34 34 A I H <5S+ 0 0 4 -4,-2.5 -2,-0.2 3,-0.2 -1,-0.2 0.772 124.3 40.5 -61.8 -24.1 6.4 1.6 -1.2 35 35 A L H <5S+ 0 0 16 -4,-1.8 4,-0.2 -5,-0.2 -2,-0.2 0.906 136.0 8.0 -93.4 -48.4 5.8 0.1 -4.6 36 36 A N T ><5S+ 0 0 102 -4,-3.4 3,-0.7 -5,-0.2 -3,-0.2 0.838 129.2 49.9-102.4 -46.0 8.4 1.7 -6.9 37 37 A S T 3 > S+ 0 0 74 1,-0.2 4,-2.8 2,-0.2 3,-1.5 0.907 119.5 48.8 -63.5 -43.1 14.3 -6.9 -2.0 42 42 A A H 3>>S+ 0 0 63 1,-0.3 4,-0.8 2,-0.2 5,-0.5 0.814 107.4 56.9 -66.2 -28.5 13.9 -6.2 1.7 43 43 A D H 345S+ 0 0 22 3,-0.2 -1,-0.3 2,-0.1 -2,-0.2 0.423 115.3 38.2 -83.3 1.5 11.9 -3.1 0.7 44 44 A R H <>5S+ 0 0 90 -3,-1.5 4,-1.4 47,-0.2 -2,-0.2 0.735 122.7 33.1-111.6 -56.5 9.6 -5.4 -1.3 45 45 A R H X5S+ 0 0 94 -4,-2.8 4,-1.3 46,-0.3 -3,-0.2 0.921 126.5 40.6 -73.4 -42.6 9.1 -8.6 0.6 46 46 A A H <5S+ 0 0 38 -4,-0.8 4,-0.3 -5,-0.5 -1,-0.2 0.835 109.9 60.0 -74.3 -32.0 9.2 -7.1 4.1 47 47 A V H >> S+ 0 0 4 -3,-1.0 4,-2.1 -4,-0.3 3,-0.7 0.685 103.3 65.4-103.1 -33.5 3.9 -4.7 7.0 51 51 A L H 3X S+ 0 0 16 -4,-1.8 4,-3.1 1,-0.2 -2,-0.2 0.815 92.6 67.4 -55.6 -31.3 1.1 -3.9 4.5 52 52 A K H 3< S+ 0 0 86 -4,-1.6 -1,-0.2 1,-0.2 -2,-0.1 0.908 109.9 30.5 -57.6 -48.9 -0.7 -6.9 6.0 53 53 A A H <> S+ 0 0 69 -3,-0.7 4,-0.5 -4,-0.2 -1,-0.2 0.726 117.4 57.5 -86.5 -23.3 -1.3 -5.2 9.4 54 54 A A H >< S+ 0 0 8 -4,-2.1 3,-0.5 2,-0.2 -2,-0.2 0.913 115.1 37.2 -70.3 -41.6 -1.4 -1.7 8.0 55 55 A A T 3< S+ 0 0 15 -4,-3.1 -1,-0.2 1,-0.2 -2,-0.2 0.387 115.1 59.4 -84.6 1.4 -4.3 -2.9 5.8 56 56 A G T 34 S+ 0 0 49 -5,-0.2 -2,-0.2 1,-0.1 -1,-0.2 0.501 88.5 69.8-101.0 -9.3 -5.3 -4.9 8.8 57 57 A A << + 0 0 32 -4,-0.5 2,-0.7 -3,-0.5 -2,-0.1 0.402 69.3 135.5 -84.0 -0.1 -5.6 -1.7 10.9 58 58 A V + 0 0 52 -3,-0.1 2,-0.7 1,-0.1 3,-0.2 -0.344 29.1 176.8 -56.3 98.6 -8.7 -1.0 8.8 59 59 A R S S- 0 0 188 -2,-0.7 -1,-0.1 1,-0.2 -2,-0.1 -0.899 78.5 -9.8-109.3 102.1 -11.3 0.2 11.3 60 60 A G S S+ 0 0 63 -2,-0.7 -1,-0.2 1,-0.1 -2,-0.1 0.814 103.0 158.5 78.8 32.1 -14.4 1.2 9.4 61 61 A I - 0 0 36 -3,-0.2 -43,-0.2 -42,-0.1 -1,-0.1 -0.132 42.9-124.0 -81.9 177.3 -12.5 0.9 6.2 62 62 A N >> - 0 0 70 -45,-1.5 3,-1.2 1,-0.1 4,-0.6 -0.962 9.8-162.0-127.2 114.7 -13.7 0.5 2.6 63 63 A P H >> S+ 0 0 101 0, 0.0 4,-0.9 0, 0.0 3,-0.8 0.803 90.3 65.2 -65.0 -30.2 -12.3 -2.5 0.7 64 64 A N H 3> S+ 0 0 101 1,-0.3 4,-0.7 2,-0.2 3,-0.2 0.793 100.7 51.5 -62.4 -27.6 -13.4 -1.0 -2.7 65 65 A N H <> S+ 0 0 12 -3,-1.2 4,-1.9 -48,-0.3 -1,-0.3 0.672 96.1 70.4 -82.6 -17.8 -10.9 1.8 -2.0 66 66 A A H << S+ 0 0 27 -3,-0.8 -2,-0.2 -4,-0.6 -1,-0.2 0.865 105.4 38.0 -68.3 -36.3 -8.1 -0.7 -1.3 67 67 A E H X S+ 0 0 93 -4,-0.9 4,-0.8 1,-0.2 -1,-0.2 0.713 115.3 54.8 -85.1 -22.9 -8.0 -1.6 -5.0 68 68 A A H X S+ 0 0 28 -4,-0.7 4,-2.6 -5,-0.2 5,-0.2 0.804 92.1 77.4 -75.0 -28.8 -8.6 2.0 -6.0 69 69 A L H X S+ 0 0 2 -4,-1.9 4,-0.8 1,-0.2 -2,-0.2 0.904 100.7 34.5 -48.5 -57.8 -5.6 2.9 -3.8 70 70 A P H >>S+ 0 0 6 0, 0.0 5,-2.4 0, 0.0 4,-1.6 0.857 116.4 58.0 -68.8 -32.5 -2.9 1.8 -6.4 71 71 A G H <5S+ 0 0 51 -4,-0.8 -2,-0.2 1,-0.2 -3,-0.1 0.864 100.0 55.0 -67.1 -37.4 -5.0 2.8 -9.3 72 72 A K H <5S+ 0 0 123 -4,-2.6 -1,-0.2 1,-0.2 -3,-0.1 0.779 112.0 43.3 -71.2 -26.7 -5.3 6.5 -8.3 73 73 A c H <5S- 0 0 13 -4,-0.8 -1,-0.2 -3,-0.3 -2,-0.2 0.768 117.1-111.1 -86.9 -27.2 -1.6 7.0 -8.1 74 74 A G T <5S+ 0 0 55 -4,-1.6 2,-0.4 1,-0.1 -3,-0.2 0.836 72.0 132.3 98.2 43.7 -0.9 5.1 -11.3 75 75 A V < - 0 0 8 -5,-2.4 2,-1.5 -6,-0.1 -1,-0.1 -0.770 31.4-174.8-130.6 85.3 0.9 2.0 -10.0 76 76 A N - 0 0 158 -2,-0.4 4,-0.1 -5,-0.1 -5,-0.0 -0.652 21.0-173.2 -79.8 87.9 -0.5 -1.2 -11.5 77 77 A I - 0 0 14 -2,-1.5 -2,-0.0 2,-0.1 -42,-0.0 -0.492 31.0-129.7 -84.6 152.7 1.5 -3.7 -9.4 78 78 A P S S+ 0 0 123 0, 0.0 -1,-0.1 0, 0.0 2,-0.0 0.968 97.1 52.5 -63.7 -56.8 1.6 -7.5 -10.0 79 79 A Y S S- 0 0 47 1,-0.1 2,-0.2 11,-0.1 -2,-0.1 -0.284 89.6-132.2 -69.1 166.7 0.9 -8.3 -6.3 80 80 A K - 0 0 76 2,-0.1 5,-0.2 5,-0.1 -1,-0.1 -0.580 23.6 -99.0-120.9-178.1 -2.1 -6.6 -4.7 81 81 A I S S+ 0 0 16 -2,-0.2 2,-0.1 -15,-0.1 -14,-0.0 0.221 77.4 133.4 -84.3 13.1 -3.2 -4.6 -1.7 82 82 A S > - 0 0 59 1,-0.1 3,-1.3 2,-0.1 -2,-0.1 -0.425 65.1-131.0 -67.0 139.7 -4.6 -7.9 -0.4 83 83 A T T 3 S+ 0 0 63 1,-0.3 -1,-0.1 -28,-0.1 3,-0.1 0.661 109.3 33.9 -66.5 -15.7 -3.7 -8.7 3.2 84 84 A S T 3 S+ 0 0 89 1,-0.1 -1,-0.3 2,-0.1 -3,-0.1 -0.275 71.3 131.2-134.7 48.9 -2.6 -12.2 2.1 85 85 A T S < S- 0 0 35 -3,-1.3 -2,-0.1 -5,-0.2 -1,-0.1 0.397 79.6-106.1 -82.1 5.7 -1.2 -11.5 -1.4 86 86 A N - 0 0 80 1,-0.1 -2,-0.1 -3,-0.1 -4,-0.0 0.873 32.6-157.0 65.5 109.0 1.8 -13.6 -0.4 87 87 A d S S+ 0 0 11 1,-0.2 -39,-0.2 2,-0.1 -38,-0.2 0.467 80.3 55.9-100.2 -3.9 4.8 -11.4 0.3 88 88 A N S > S+ 0 0 104 1,-0.1 3,-0.8 2,-0.1 -1,-0.2 0.783 101.1 53.1 -99.9 -30.6 7.7 -13.8 -0.2 89 89 A S T 3 S+ 0 0 88 1,-0.2 -1,-0.1 -44,-0.1 -2,-0.1 0.270 88.7 82.2 -91.1 12.8 7.1 -15.1 -3.7 90 90 A I T 3 0 0 33 1,-0.2 -1,-0.2 -3,-0.0 -2,-0.1 0.746 360.0 360.0 -80.9 -25.4 6.9 -11.6 -5.1 91 91 A N < 0 0 114 -3,-0.8 -46,-0.3 -4,-0.1 -1,-0.2 -0.562 360.0 360.0 69.6 360.0 10.7 -11.5 -5.3