==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=13-NOV-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSLATION/RNA 02-MAR-04 1SJ3 . COMPND 2 MOLECULE: PRECURSOR FORM OF THE HEPATITIS DELTA VIRUS RIBOZ . SOURCE 2 ORGANISM_SCIENTIFIC: HEPATITIS DELTA VIRUS; . AUTHOR A.KE,K.ZHOU,F.DING,J.H.CATE,J.A.DOUDNA . 95 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5947.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 61 64.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 19 20.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 6.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 11.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 23 24.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 4 P P 0 0 181 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 88.0 41.6 29.0 78.6 2 5 P E - 0 0 88 1,-0.1 2,-0.3 80,-0.0 80,-0.0 0.158 360.0-106.7 -49.5 172.8 40.3 30.1 82.0 3 6 P T - 0 0 37 80,-0.0 80,-0.1 1,-0.0 -1,-0.1 -0.799 24.9-117.2-109.1 153.0 42.6 31.5 84.7 4 7 P R - 0 0 189 -2,-0.3 -1,-0.0 81,-0.2 0, 0.0 -0.467 49.6 -72.9 -82.9 158.6 43.8 29.8 87.9 5 8 P P + 0 0 75 0, 0.0 2,-0.3 0, 0.0 -1,-0.2 -0.114 60.0 177.9 -50.3 140.5 43.0 31.2 91.4 6 9 P N - 0 0 13 53,-0.2 50,-0.1 -3,-0.1 56,-0.1 -0.962 45.4-118.5-147.4 161.4 44.8 34.3 92.4 7 10 P H S S+ 0 0 36 -2,-0.3 49,-2.5 55,-0.1 2,-0.4 0.736 102.5 61.0 -67.9 -24.6 45.1 36.9 95.2 8 11 P T E S-A 55 0A 0 47,-0.2 76,-2.4 76,-0.1 2,-0.4 -0.867 72.0-151.4-111.2 138.4 43.9 39.5 92.7 9 12 P I E -AB 54 83A 0 45,-2.5 45,-2.0 -2,-0.4 2,-0.6 -0.859 10.0-144.8-108.2 143.2 40.7 39.6 90.8 10 13 P Y E -AB 53 82A 47 72,-3.7 72,-2.3 -2,-0.4 2,-0.4 -0.935 18.5-171.2-107.9 123.5 40.4 41.2 87.4 11 14 P I E +AB 52 81A 0 41,-2.9 41,-2.2 -2,-0.6 2,-0.2 -0.910 10.2 164.5-115.8 140.2 37.2 43.0 86.8 12 15 P N E + B 0 80A 31 68,-2.7 68,-2.1 -2,-0.4 39,-0.2 -0.815 46.8 68.0-141.2-173.1 36.0 44.5 83.5 13 16 P N S S+ 0 0 46 37,-0.3 2,-0.2 -2,-0.2 38,-0.1 0.814 71.9 155.8 66.6 29.7 32.9 45.8 81.7 14 17 P L - 0 0 2 36,-2.1 2,-0.3 -3,-0.1 -1,-0.2 -0.579 56.3 -90.0 -87.3 151.5 33.0 48.7 84.2 15 18 P N > - 0 0 39 59,-0.3 3,-1.1 -2,-0.2 35,-0.2 -0.432 34.8-158.2 -62.7 119.9 31.4 52.1 83.4 16 19 P E T 3 S+ 0 0 98 -2,-0.3 -1,-0.2 1,-0.2 34,-0.1 0.634 82.0 73.4 -77.8 -12.6 34.2 54.1 81.8 17 20 P K T 3 S+ 0 0 76 2,-0.1 2,-0.4 33,-0.0 -1,-0.2 0.563 75.0 100.6 -78.1 -7.1 32.6 57.4 82.6 18 21 P I S < S- 0 0 21 -3,-1.1 -4,-0.0 1,-0.1 0, 0.0 -0.656 76.7-119.1 -85.7 129.2 33.6 57.2 86.3 19 22 P K > - 0 0 140 -2,-0.4 4,-2.5 1,-0.1 5,-0.2 -0.238 25.6-113.4 -62.3 152.9 36.6 59.1 87.5 20 23 P K H > S+ 0 0 104 1,-0.2 4,-2.3 2,-0.2 5,-0.2 0.871 110.7 49.2 -54.4 -50.0 39.5 57.0 89.0 21 24 P D H > S+ 0 0 104 2,-0.2 4,-1.8 1,-0.2 -1,-0.2 0.937 114.8 44.6 -61.1 -46.9 39.4 58.2 92.6 22 25 P E H > S+ 0 0 90 1,-0.2 4,-3.3 2,-0.2 5,-0.3 0.935 110.6 54.8 -64.4 -45.2 35.6 57.6 92.9 23 26 P L H X S+ 0 0 9 -4,-2.5 4,-2.4 1,-0.2 -1,-0.2 0.919 109.0 47.2 -54.6 -48.4 35.8 54.2 91.2 24 27 P K H X S+ 0 0 67 -4,-2.3 4,-2.0 2,-0.2 -1,-0.2 0.897 113.8 48.8 -60.9 -41.6 38.4 52.9 93.6 25 28 P K H X S+ 0 0 130 -4,-1.8 4,-1.9 2,-0.2 -2,-0.2 0.954 112.9 45.7 -62.7 -54.6 36.4 54.2 96.6 26 29 P S H X S+ 0 0 31 -4,-3.3 4,-1.0 1,-0.2 -1,-0.2 0.867 111.9 53.0 -58.3 -38.1 33.1 52.7 95.4 27 30 P L H >X S+ 0 0 0 -4,-2.4 4,-1.8 -5,-0.3 3,-0.5 0.905 108.3 49.5 -65.7 -38.9 34.9 49.4 94.6 28 31 P H H 3X S+ 0 0 88 -4,-2.0 4,-2.1 1,-0.2 -1,-0.2 0.868 103.1 63.5 -65.4 -35.1 36.3 49.3 98.1 29 32 P A H 3< S+ 0 0 75 -4,-1.9 -1,-0.2 1,-0.2 -2,-0.2 0.802 114.4 30.1 -58.6 -34.0 32.8 49.9 99.5 30 33 P I H << S+ 0 0 35 -4,-1.0 -1,-0.2 -3,-0.5 -2,-0.2 0.685 123.4 44.4-103.9 -18.6 31.5 46.7 98.1 31 34 P F H >< S+ 0 0 0 -4,-1.8 3,-1.7 -5,-0.1 4,-0.3 0.624 87.2 83.1-101.3 -14.8 34.5 44.4 98.1 32 35 P S G >< S+ 0 0 53 -4,-2.1 3,-1.2 1,-0.3 -1,-0.1 0.759 81.7 67.9 -61.4 -23.6 36.0 45.1 101.6 33 36 P R G 3 S+ 0 0 168 1,-0.2 -1,-0.3 -5,-0.2 3,-0.1 0.696 90.0 62.6 -69.9 -18.6 33.6 42.7 103.2 34 37 P F G < S- 0 0 20 -3,-1.7 -1,-0.2 1,-0.3 2,-0.2 0.582 123.1 -67.4 -83.1 -6.7 35.3 39.7 101.4 35 38 P G S < S- 0 0 22 -3,-1.2 -1,-0.3 -4,-0.3 2,-0.1 -0.797 75.8 -31.8 143.6 173.7 38.5 40.4 103.3 36 39 P Q - 0 0 110 -2,-0.2 21,-2.0 -3,-0.1 2,-0.5 -0.358 54.2-147.8 -61.6 134.0 41.4 42.8 103.7 37 40 P I E -C 56 0A 22 19,-0.2 19,-0.2 1,-0.1 3,-0.1 -0.912 12.9-168.8-108.0 126.2 42.3 44.7 100.5 38 41 P L E - 0 0 62 17,-2.9 2,-0.3 -2,-0.5 18,-0.2 0.837 68.2 -29.3 -81.9 -33.4 45.9 45.6 99.9 39 42 P D E -C 55 0A 65 16,-1.1 16,-2.7 2,-0.0 2,-0.4 -0.979 45.7-137.5-172.8 165.0 45.2 47.9 97.0 40 43 P I E -C 54 0A 6 -2,-0.3 2,-0.5 14,-0.2 14,-0.2 -0.975 21.1-156.5-137.0 120.3 42.9 48.6 94.0 41 44 P L E +C 53 0A 69 12,-2.6 12,-2.1 -2,-0.4 2,-0.4 -0.879 17.4 168.8-107.5 129.0 44.5 49.6 90.7 42 45 P V - 0 0 13 -2,-0.5 2,-0.4 10,-0.2 10,-0.1 -0.998 8.9-177.7-138.0 137.2 42.6 51.5 88.1 43 46 P S - 0 0 51 5,-0.6 8,-0.4 8,-0.5 7,-0.0 -1.000 18.7-159.1-136.4 137.9 43.7 53.3 84.9 44 47 P R + 0 0 110 -2,-0.4 5,-0.2 5,-0.1 -1,-0.0 0.280 51.5 128.7 -96.7 10.8 41.7 55.3 82.5 45 48 P S S > S- 0 0 54 1,-0.1 4,-2.3 3,-0.1 -2,-0.1 -0.188 78.4 -99.8 -63.4 160.9 44.1 54.9 79.6 46 49 P L T 4 S+ 0 0 148 1,-0.2 -1,-0.1 2,-0.2 -3,-0.0 0.836 124.6 39.3 -48.1 -40.9 42.8 53.7 76.2 47 50 P K T 4 S+ 0 0 168 1,-0.1 -1,-0.2 3,-0.0 -3,-0.0 0.807 122.9 37.7 -82.7 -33.1 44.0 50.2 77.0 48 51 P M T >4 S+ 0 0 49 -3,-0.1 3,-1.1 2,-0.0 -5,-0.6 0.477 83.7 114.6-103.5 -1.1 43.1 50.0 80.8 49 52 P R T 3< S+ 0 0 103 -4,-2.3 -5,-0.1 1,-0.2 -33,-0.1 -0.245 73.8 30.6 -65.6 159.0 39.8 51.8 81.0 50 53 P G T 3 S+ 0 0 12 1,-0.2 -36,-2.1 -35,-0.2 2,-0.3 0.501 108.6 88.6 72.0 3.9 36.7 49.9 82.0 51 54 P Q < - 0 0 36 -3,-1.1 -8,-0.5 -8,-0.4 2,-0.3 -0.870 50.3-176.2-131.6 162.7 38.9 47.5 84.1 52 55 P A E -A 11 0A 0 -41,-2.2 -41,-2.9 -2,-0.3 2,-0.5 -0.989 19.0-141.8-156.1 154.3 40.2 47.2 87.6 53 56 P F E -AC 10 41A 62 -12,-2.1 -12,-2.6 -2,-0.3 2,-0.6 -0.985 14.8-167.4-120.4 117.0 42.5 45.0 89.7 54 57 P V E -AC 9 40A 0 -45,-2.0 -45,-2.5 -2,-0.5 2,-0.7 -0.941 11.4-153.5-107.1 122.4 41.4 44.4 93.4 55 58 P I E -AC 8 39A 0 -16,-2.7 -17,-2.9 -2,-0.6 -16,-1.1 -0.855 9.6-166.5-106.2 107.9 44.2 42.8 95.4 56 59 P F E - C 0 37A 0 -49,-2.5 -19,-0.2 -2,-0.7 3,-0.1 -0.565 24.0-135.3 -90.1 150.5 43.2 40.7 98.4 57 60 P K S S+ 0 0 99 -21,-2.0 2,-0.4 -2,-0.2 -1,-0.1 0.885 93.5 40.7 -70.7 -38.3 45.6 39.6 101.1 58 61 P E S >> S- 0 0 118 -22,-0.4 3,-1.5 -51,-0.1 4,-1.2 -0.944 75.0-137.8-119.0 133.0 44.1 36.0 101.1 59 62 P V H 3> S+ 0 0 48 -2,-0.4 4,-2.8 1,-0.3 5,-0.2 0.785 102.7 65.2 -53.3 -31.8 43.1 34.0 98.0 60 63 P S H 3> S+ 0 0 68 1,-0.2 4,-2.4 2,-0.2 -1,-0.3 0.865 100.2 52.4 -63.0 -31.3 40.0 32.8 99.8 61 64 P S H <> S+ 0 0 14 -3,-1.5 4,-3.3 2,-0.2 5,-0.2 0.948 109.3 48.0 -67.6 -48.2 38.7 36.4 99.8 62 65 P A H X S+ 0 0 0 -4,-1.2 4,-3.0 1,-0.2 -2,-0.2 0.923 112.9 49.5 -57.4 -45.5 39.4 36.7 96.0 63 66 P T H X S+ 0 0 20 -4,-2.8 4,-2.0 2,-0.2 -1,-0.2 0.898 113.6 45.1 -62.2 -42.4 37.6 33.5 95.5 64 67 P N H X S+ 0 0 85 -4,-2.4 4,-3.0 -5,-0.2 5,-0.3 0.947 113.9 49.6 -64.3 -48.9 34.6 34.5 97.6 65 68 P A H X S+ 0 0 0 -4,-3.3 4,-2.3 1,-0.2 -2,-0.2 0.910 110.2 52.1 -54.8 -47.0 34.5 38.0 95.9 66 69 P L H X S+ 0 0 26 -4,-3.0 4,-0.6 -5,-0.2 -1,-0.2 0.930 114.9 39.2 -59.2 -50.3 34.6 36.4 92.5 67 70 P R H >< S+ 0 0 195 -4,-2.0 3,-0.5 -5,-0.2 -2,-0.2 0.939 118.8 46.6 -67.7 -46.0 31.7 34.0 93.1 68 71 P S H 3< S+ 0 0 67 -4,-3.0 -2,-0.2 1,-0.2 -3,-0.2 0.830 119.0 35.7 -67.2 -36.2 29.5 36.4 95.1 69 72 P M H >< S+ 0 0 6 -4,-2.3 3,-2.2 -5,-0.3 -1,-0.2 0.331 76.4 132.7-104.6 8.7 29.8 39.5 92.9 70 73 P Q T << S+ 0 0 100 -4,-0.6 10,-0.2 -3,-0.5 -4,-0.0 -0.402 85.7 7.0 -61.0 124.2 29.8 38.0 89.4 71 74 P G T 3 S+ 0 0 31 8,-2.6 -1,-0.3 1,-0.2 9,-0.1 0.506 88.3 160.8 82.8 2.6 27.3 40.0 87.3 72 75 P F < - 0 0 83 -3,-2.2 7,-1.9 7,-0.2 2,-0.3 -0.404 45.6-116.8 -64.6 124.9 26.6 42.6 90.0 73 76 P P E +D 78 0B 92 0, 0.0 2,-0.4 0, 0.0 -1,-0.1 -0.474 42.9 172.6 -63.9 122.2 25.1 45.9 88.6 74 77 P F E > -D 77 0B 16 3,-2.2 3,-1.3 -2,-0.3 -59,-0.3 -0.980 68.9 -13.0-140.4 118.9 27.6 48.6 89.3 75 78 P Y T 3 S- 0 0 52 -2,-0.4 -1,-0.1 1,-0.3 -57,-0.1 0.932 132.9 -52.0 52.4 46.0 27.1 52.1 87.9 76 79 P D T 3 S+ 0 0 159 1,-0.1 -1,-0.3 -61,-0.0 -62,-0.0 0.575 120.2 100.1 69.1 15.1 24.4 50.6 85.6 77 80 P K E < S-D 74 0B 64 -3,-1.3 -3,-2.2 -5,-0.1 2,-0.4 -0.992 77.3-111.9-138.8 137.5 26.6 47.7 84.2 78 81 P P E -D 73 0B 76 0, 0.0 2,-0.2 0, 0.0 -6,-0.2 -0.465 38.6-129.6 -64.6 116.5 26.9 44.0 85.0 79 82 P M - 0 0 1 -7,-1.9 -8,-2.6 -2,-0.4 2,-0.6 -0.492 17.3-153.2 -70.7 129.1 30.4 43.6 86.6 80 83 P R E -B 12 0A 118 -68,-2.1 -68,-2.7 -2,-0.2 2,-0.4 -0.937 16.6-170.7-107.4 126.2 32.4 40.8 84.9 81 84 P I E +B 11 0A 7 -2,-0.6 2,-0.3 -70,-0.2 -70,-0.2 -0.922 15.7 156.0-123.3 144.2 35.0 39.2 87.2 82 85 P Q E -B 10 0A 82 -72,-2.3 -72,-3.7 -2,-0.4 2,-0.2 -0.912 48.0 -90.1-148.1 169.5 37.9 36.7 86.7 83 86 P Y E -B 9 0A 33 -2,-0.3 -74,-0.2 -74,-0.3 2,-0.1 -0.548 52.2-103.5 -80.3 152.3 41.1 35.9 88.5 84 87 P A - 0 0 6 -76,-2.4 -76,-0.1 -2,-0.2 -80,-0.1 -0.502 23.9-126.4 -73.8 149.6 44.1 38.0 87.3 85 88 P K S S+ 0 0 189 -2,-0.1 2,-0.3 -82,-0.1 -81,-0.2 0.942 87.9 19.3 -60.9 -49.2 46.5 36.1 85.0 86 89 P T S S- 0 0 107 1,-0.1 -1,-0.1 -80,-0.0 -78,-0.1 -0.841 93.2 -86.1-124.8 161.1 49.6 36.8 87.0 87 90 P D - 0 0 65 -2,-0.3 2,-0.2 1,-0.1 -1,-0.1 -0.273 43.0-117.5 -63.2 145.9 50.4 38.0 90.6 88 91 P S >> - 0 0 16 1,-0.1 4,-1.9 -4,-0.0 3,-0.9 -0.500 27.3-112.2 -79.2 155.9 50.4 41.7 91.3 89 92 P D H 3> S+ 0 0 119 1,-0.3 4,-2.8 2,-0.2 5,-0.1 0.857 116.6 60.5 -58.3 -38.0 53.7 43.2 92.4 90 93 P I H 34 S+ 0 0 59 1,-0.2 -1,-0.3 2,-0.2 -3,-0.0 0.839 109.9 43.3 -58.0 -33.9 52.4 43.9 95.9 91 94 P I H X> S+ 0 0 5 -3,-0.9 4,-1.1 1,-0.2 3,-1.1 0.841 110.7 53.2 -81.8 -36.5 51.8 40.1 96.3 92 95 P A H 3< S+ 0 0 59 -4,-1.9 -2,-0.2 1,-0.3 -3,-0.2 0.897 94.5 70.5 -65.6 -39.9 55.1 39.1 94.7 93 96 P K T 3< S+ 0 0 171 -4,-2.8 -1,-0.3 -5,-0.2 -2,-0.1 0.366 121.6 13.5 -61.4 10.5 57.0 41.3 97.2 94 97 P M T <4 0 0 147 -3,-1.1 -2,-0.2 -5,-0.1 -3,-0.1 0.192 360.0 360.0-142.0 -87.4 55.9 38.7 99.7 95 98 P K < 0 0 89 -4,-1.1 -2,-0.2 0, 0.0 -4,-0.1 -0.560 360.0 360.0 -88.1 360.0 54.5 35.4 98.4