==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=12-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 04-MAR-04 1SJQ . COMPND 2 MOLECULE: POLYPYRIMIDINE TRACT-BINDING PROTEIN 1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR P.J.SIMPSON,T.P.MONIE,A.SZENDROI,N.DAVYDOVA,J.K.TYZACK, . 88 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6052.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 60 68.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 18 20.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 12 13.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 10.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 18 20.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 12 A S 0 0 165 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-171.0 -16.6 13.8 -0.9 2 13 A G - 0 0 65 1,-0.1 50,-0.0 2,-0.0 49,-0.0 0.095 360.0-134.7 -37.6 151.8 -14.5 11.2 1.1 3 14 A V - 0 0 83 2,-0.1 2,-1.4 48,-0.1 -1,-0.1 -0.967 19.3-113.9-122.1 121.2 -13.8 8.0 -0.8 4 15 A P + 0 0 133 0, 0.0 2,-0.4 0, 0.0 -2,-0.0 -0.253 63.4 141.1 -52.0 86.1 -14.1 4.6 0.9 5 16 A S + 0 0 20 -2,-1.4 50,-0.2 1,-0.1 49,-0.2 -0.858 4.9 138.2-138.6 101.5 -10.4 3.7 0.9 6 17 A R + 0 0 116 75,-0.4 42,-1.8 -2,-0.4 2,-0.4 0.751 63.2 62.0-108.2 -40.7 -8.9 1.9 3.9 7 18 A V E S-A 47 0A 1 74,-0.4 71,-1.1 73,-0.3 2,-0.7 -0.746 70.2-148.4 -93.6 135.9 -6.6 -0.7 2.2 8 19 A I E -A 46 0A 0 38,-2.9 38,-1.6 -2,-0.4 2,-0.8 -0.893 6.5-151.8-108.0 109.8 -3.7 0.5 0.0 9 20 A H E -A 45 0A 32 -2,-0.7 67,-2.7 67,-0.5 2,-0.5 -0.698 12.1-150.2 -83.1 109.1 -2.8 -1.9 -2.8 10 21 A I E -AB 44 75A 1 34,-2.7 34,-1.4 -2,-0.8 3,-0.3 -0.690 16.6-169.0 -83.4 122.3 0.9 -1.5 -3.7 11 22 A R + 0 0 131 63,-1.0 63,-0.3 -2,-0.5 32,-0.1 -0.500 62.7 29.6-103.6 174.8 1.7 -2.2 -7.3 12 23 A K S S+ 0 0 132 61,-0.2 -1,-0.2 1,-0.2 31,-0.1 0.853 91.3 131.5 42.9 41.4 5.0 -2.6 -9.1 13 24 A L - 0 0 2 29,-0.9 2,-2.3 -3,-0.3 -1,-0.2 -0.986 63.7-132.5-128.2 127.0 6.3 -4.0 -5.9 14 25 A P > - 0 0 52 0, 0.0 3,-0.8 0, 0.0 25,-0.1 -0.443 34.9-131.0 -75.6 71.7 8.3 -7.2 -5.5 15 26 A I T 3 S+ 0 0 5 -2,-2.3 27,-0.1 1,-0.2 3,-0.0 0.101 92.6 59.5 -27.2 110.6 6.3 -8.6 -2.5 16 27 A D T 3 S+ 0 0 116 26,-0.0 -1,-0.2 2,-0.0 3,-0.1 0.062 73.1 121.7 146.1 -18.7 9.1 -9.5 -0.1 17 28 A V S < S- 0 0 33 -3,-0.8 2,-0.3 1,-0.1 20,-0.1 0.296 73.3 -71.7 -52.4-167.8 10.8 -6.2 0.3 18 29 A T >> - 0 0 67 1,-0.1 4,-1.5 -3,-0.0 3,-0.5 -0.748 25.7-145.7 -99.4 145.2 11.0 -4.6 3.8 19 30 A E H 3>>S+ 0 0 102 -2,-0.3 4,-3.1 1,-0.2 5,-0.8 0.929 95.2 71.5 -70.3 -46.8 8.2 -3.2 5.8 20 31 A G H 3>5S+ 0 0 53 1,-0.2 4,-0.7 2,-0.2 -1,-0.2 0.769 106.3 42.8 -40.0 -28.6 10.3 -0.5 7.4 21 32 A E H <>5S+ 0 0 67 -3,-0.5 4,-1.9 2,-0.2 -1,-0.2 0.943 114.1 45.6 -84.0 -57.3 10.2 1.0 3.9 22 33 A V H X5S+ 0 0 0 -4,-1.5 4,-1.2 1,-0.2 3,-0.3 0.929 123.2 37.8 -51.5 -50.0 6.6 0.5 2.9 23 34 A I H X5S+ 0 0 43 -4,-3.1 4,-2.2 1,-0.2 -1,-0.2 0.876 106.0 67.7 -70.0 -38.2 5.5 1.8 6.3 24 35 A S H << S+ 0 0 109 -4,-2.2 3,-0.7 1,-0.3 -1,-0.2 0.919 95.8 36.9 -41.7 -60.5 4.5 7.3 8.4 28 39 A P H 34 S+ 0 0 102 0, 0.0 -1,-0.3 0, 0.0 -2,-0.2 0.843 110.8 62.8 -63.3 -34.6 3.7 10.9 7.1 29 40 A F H 3< S- 0 0 19 -4,-0.7 2,-0.2 1,-0.1 -2,-0.2 0.831 124.4 -95.3 -60.2 -32.6 0.4 9.6 5.6 30 41 A G << - 0 0 29 -4,-2.2 2,-0.3 -3,-0.7 -1,-0.1 -0.726 69.6 -23.9 157.9-102.3 -0.7 8.7 9.1 31 42 A K - 0 0 149 -2,-0.2 18,-1.7 19,-0.2 2,-0.6 -0.986 48.2-127.5-150.4 137.3 -0.3 5.3 10.7 32 43 A V E -C 48 0A 38 -2,-0.3 16,-0.2 16,-0.2 3,-0.1 -0.742 18.8-178.1 -87.8 121.7 -0.0 1.7 9.4 33 44 A T E S- 0 0 45 14,-4.9 2,-0.2 -2,-0.6 15,-0.2 0.437 71.0 -13.0 -96.3 -2.0 -2.6 -0.7 10.9 34 45 A N E -C 47 0A 80 13,-0.5 13,-1.6 2,-0.0 -1,-0.3 -0.839 51.3-152.0 171.0 152.3 -1.2 -3.7 9.0 35 46 A L E +C 46 0A 23 -2,-0.2 2,-0.6 11,-0.2 11,-0.2 -0.816 14.6 178.2-145.4 100.5 1.1 -4.7 6.2 36 47 A L E -C 45 0A 75 9,-2.4 9,-1.8 -2,-0.3 2,-1.1 -0.905 15.1-156.3-108.3 113.7 0.4 -7.9 4.2 37 48 A M E -C 44 0A 23 -2,-0.6 2,-1.4 7,-0.2 7,-0.2 -0.731 8.0-156.9 -90.8 94.9 2.8 -8.7 1.4 38 49 A L E > -C 43 0A 78 5,-1.3 5,-1.5 -2,-1.1 3,-0.2 -0.567 4.4-165.7 -74.5 93.1 0.9 -11.0 -1.0 39 50 A K T > 5 + 0 0 122 -2,-1.4 3,-1.1 1,-0.2 -1,-0.2 0.702 66.7 98.1 -51.9 -18.7 3.7 -12.7 -2.8 40 51 A G T 3 5S- 0 0 56 1,-0.3 2,-0.3 3,-0.1 -1,-0.2 0.856 105.9 -8.2 -33.7 -95.2 1.0 -13.8 -5.2 41 52 A K T 3 5S- 0 0 172 -3,-0.2 -1,-0.3 2,-0.1 -2,-0.1 -0.423 109.9 -85.7-107.9 55.9 1.3 -11.3 -8.0 42 53 A N T < 5S+ 0 0 85 -3,-1.1 -29,-0.9 -2,-0.3 2,-0.3 0.926 86.9 136.5 40.6 68.1 3.8 -8.9 -6.5 43 54 A Q E < - C 0 38A 42 -5,-1.5 -5,-1.3 -31,-0.1 2,-0.3 -0.976 35.9-162.7-147.0 129.4 1.1 -6.9 -4.6 44 55 A A E -AC 10 37A 0 -34,-1.4 -34,-2.7 -2,-0.3 2,-0.4 -0.725 3.1-157.1-109.7 160.2 1.1 -5.5 -1.1 45 56 A F E -AC 9 36A 29 -9,-1.8 -9,-2.4 -2,-0.3 2,-0.3 -0.930 10.1-178.5-142.8 115.9 -1.8 -4.3 1.0 46 57 A I E -AC 8 35A 0 -38,-1.6 -38,-2.9 -2,-0.4 2,-0.5 -0.871 17.3-141.4-114.6 146.8 -1.6 -1.9 4.0 47 58 A E E -AC 7 34A 27 -13,-1.6 -14,-4.9 -2,-0.3 -13,-0.5 -0.928 11.2-149.3-111.8 123.2 -4.4 -0.6 6.3 48 59 A M E - C 0 32A 1 -42,-1.8 -16,-0.2 -2,-0.5 6,-0.1 -0.708 12.2-141.4 -90.8 137.4 -4.4 3.0 7.5 49 60 A N S S+ 0 0 95 -18,-1.7 2,-0.3 -2,-0.4 -1,-0.1 0.721 89.2 42.8 -68.4 -20.7 -5.9 3.7 10.9 50 61 A T S >> S- 0 0 64 -19,-0.4 4,-1.7 1,-0.1 3,-0.9 -0.961 76.5-132.6-129.8 146.9 -7.4 6.9 9.4 51 62 A E H 3> S+ 0 0 122 -2,-0.3 4,-2.3 1,-0.3 5,-0.2 0.922 109.0 59.8 -59.5 -46.1 -9.1 7.8 6.1 52 63 A E H 3> S+ 0 0 153 1,-0.2 4,-1.3 2,-0.2 -1,-0.3 0.752 106.3 52.1 -54.6 -23.4 -6.9 10.8 5.7 53 64 A A H <> S+ 0 0 0 -3,-0.9 4,-2.0 2,-0.2 -1,-0.2 0.953 107.6 46.6 -78.2 -54.8 -4.0 8.4 5.8 54 65 A A H X S+ 0 0 0 -4,-1.7 4,-1.5 2,-0.2 5,-0.3 0.936 116.0 46.6 -52.7 -52.6 -5.2 5.9 3.1 55 66 A N H X S+ 0 0 31 -4,-2.3 4,-3.1 -50,-0.2 3,-0.4 0.981 109.5 50.7 -54.2 -67.0 -6.1 8.7 0.7 56 67 A T H X S+ 0 0 51 -4,-1.3 4,-1.9 -5,-0.2 5,-0.5 0.822 104.9 63.8 -41.0 -38.2 -2.9 10.7 1.1 57 68 A M H X S+ 0 0 0 -4,-2.0 4,-1.2 2,-0.2 -1,-0.2 0.972 120.5 17.0 -52.1 -65.2 -1.1 7.4 0.4 58 69 A V H X S+ 0 0 16 -4,-1.5 4,-0.6 -3,-0.4 -2,-0.2 0.939 124.6 58.8 -75.1 -49.8 -2.4 6.9 -3.1 59 70 A N H >< S+ 0 0 101 -4,-3.1 3,-2.0 -5,-0.3 4,-0.2 0.927 110.6 41.9 -43.4 -61.0 -3.5 10.5 -3.7 60 71 A Y H >X S+ 0 0 142 -4,-1.9 3,-1.0 -5,-0.3 4,-0.9 0.891 114.2 52.2 -56.0 -42.3 -0.0 11.9 -3.1 61 72 A Y H 3< S+ 0 0 15 -4,-1.2 -1,-0.3 -5,-0.5 -2,-0.2 0.465 77.9 105.3 -74.5 0.2 1.5 9.1 -5.1 62 73 A T T << S+ 0 0 104 -3,-2.0 -1,-0.3 -4,-0.6 -2,-0.2 0.792 105.7 2.9 -50.1 -29.0 -1.0 10.0 -7.9 63 74 A S T <4 S+ 0 0 112 -3,-1.0 2,-0.5 1,-0.3 -2,-0.2 0.664 126.0 62.8-122.3 -57.2 2.1 11.5 -9.6 64 75 A V S < S- 0 0 81 -4,-0.9 -1,-0.3 10,-0.0 0, 0.0 -0.647 70.7-154.7 -80.3 124.7 5.2 10.9 -7.6 65 76 A T - 0 0 44 -2,-0.5 2,-0.4 -3,-0.1 9,-0.1 -0.786 9.4-129.9-102.4 144.2 6.0 7.2 -7.2 66 77 A P - 0 0 10 0, 0.0 7,-3.3 0, 0.0 2,-0.2 -0.757 25.1-169.2 -94.6 135.0 8.0 5.7 -4.3 67 78 A V E -D 72 0B 69 -2,-0.4 2,-0.4 5,-0.3 -54,-0.0 -0.588 18.2-125.8-114.6 177.7 10.9 3.3 -5.0 68 79 A L E > S-D 71 0B 16 3,-1.1 3,-1.4 -2,-0.2 -47,-0.0 -0.947 79.3 -37.5-132.0 112.6 13.1 1.0 -2.9 69 80 A R T 3 S- 0 0 255 -2,-0.4 -1,-0.0 1,-0.3 0, 0.0 0.744 136.2 -32.0 46.6 23.4 16.9 1.3 -3.0 70 81 A G T 3 S+ 0 0 55 1,-0.1 -1,-0.3 0, 0.0 -3,-0.0 0.495 117.8 113.9 112.1 9.2 16.4 2.0 -6.6 71 82 A Q E < -D 68 0B 120 -3,-1.4 -3,-1.1 2,-0.0 2,-0.2 -0.865 61.6-139.4-117.0 97.6 13.3 -0.1 -7.2 72 83 A P E -D 67 0B 65 0, 0.0 2,-0.6 0, 0.0 -5,-0.3 -0.352 20.8-171.5 -57.6 117.1 10.2 2.0 -8.0 73 84 A I - 0 0 1 -7,-3.3 -61,-0.2 -2,-0.2 -60,-0.2 -0.927 14.1-141.2-118.6 107.7 7.2 0.5 -6.2 74 85 A Y - 0 0 97 -2,-0.6 -63,-1.0 -63,-0.3 2,-0.5 -0.298 7.7-150.0 -65.4 148.4 3.8 2.0 -7.1 75 86 A I B +B 10 0A 6 -65,-0.3 -65,-0.3 -14,-0.2 2,-0.2 -0.914 24.7 165.4-126.2 103.9 1.2 2.5 -4.3 76 87 A Q - 0 0 114 -67,-2.7 -67,-0.5 -2,-0.5 -18,-0.0 -0.649 36.8 -94.0-112.7 170.8 -2.4 2.3 -5.3 77 88 A F - 0 0 54 -69,-0.3 -69,-0.2 -2,-0.2 -1,-0.2 0.017 46.9 -92.8 -71.2-175.9 -5.7 1.9 -3.4 78 89 A S - 0 0 32 -71,-1.1 -1,-0.1 -70,-0.1 -70,-0.0 -0.419 13.4-143.6 -96.1 174.1 -7.5 -1.4 -2.7 79 90 A N S S+ 0 0 149 -2,-0.1 2,-0.3 -74,-0.0 3,-0.1 -0.013 77.1 51.8-126.9 27.3 -10.2 -3.2 -4.6 80 91 A H S S- 0 0 149 1,-0.3 -73,-0.3 -73,-0.1 -2,-0.1 -0.987 90.4 -94.6-158.5 159.4 -12.2 -4.6 -1.7 81 92 A K S S- 0 0 128 -2,-0.3 -74,-0.4 1,-0.1 -75,-0.4 0.902 91.8 -29.9 -38.5 -88.6 -13.9 -3.5 1.6 82 93 A E S S- 0 0 92 -76,-0.1 2,-0.4 -3,-0.1 -1,-0.1 -0.894 71.6 -85.7-135.1 164.7 -11.2 -4.3 4.1 83 94 A L - 0 0 44 -2,-0.3 2,-0.4 -3,-0.1 -36,-0.0 -0.579 41.9-140.9 -74.6 123.3 -8.3 -6.7 4.5 84 95 A K - 0 0 153 -2,-0.4 2,-1.2 2,-0.1 -1,-0.0 -0.717 9.9-131.1 -88.6 131.4 -9.4 -9.9 6.1 85 96 A T > - 0 0 99 -2,-0.4 3,-2.7 1,-0.1 2,-0.4 -0.686 49.8 -87.2 -84.7 97.0 -7.0 -11.5 8.7 86 97 A D T 3 S- 0 0 149 -2,-1.2 -1,-0.1 1,-0.3 -2,-0.1 -0.104 93.7 -42.4 40.8 -91.0 -6.7 -15.1 7.6 87 98 A S T 3 0 0 84 1,-0.6 -1,-0.3 -2,-0.4 -3,-0.0 -0.023 360.0 360.0-157.8 37.3 -9.8 -16.3 9.5 88 99 A S < 0 0 150 -3,-2.7 -1,-0.6 0, 0.0 -4,-0.0 -0.330 360.0 360.0 72.1 360.0 -9.7 -14.6 12.9