==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=12-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER UNKNOWN FUNCTION 05-MAR-04 1SKH . COMPND 2 MOLECULE: MAJOR PRION PROTEIN 2; . SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; . AUTHOR H.BIVERSTAHL,A.ANDERSSON,A.GRASLUND,L.MALER . 30 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3469.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 18 60.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 6.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 13.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 12 40.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 212 0, 0.0 2,-0.3 0, 0.0 5,-0.1 0.000 360.0 360.0 360.0 -73.9 -17.2 -2.7 -2.9 2 2 A V > - 0 0 94 3,-0.1 3,-1.5 1,-0.0 0, 0.0 -0.901 360.0-112.3-131.0 159.3 -19.4 0.2 -2.0 3 3 A K T 3 S+ 0 0 195 -2,-0.3 3,-0.4 1,-0.3 4,-0.1 0.729 122.3 56.7 -60.7 -21.6 -19.7 3.8 -3.1 4 4 A S T > S+ 0 0 120 1,-0.2 2,-0.6 2,-0.1 3,-0.6 0.705 97.7 62.6 -81.4 -22.3 -18.5 4.6 0.4 5 5 A K T < S+ 0 0 140 -3,-1.5 -1,-0.2 1,-0.2 3,-0.2 -0.437 70.9 103.4-100.6 56.3 -15.4 2.5 -0.2 6 6 A I T > + 0 0 108 -2,-0.6 3,-0.8 -3,-0.4 4,-0.5 0.605 66.9 66.9-107.0 -21.8 -14.1 4.6 -3.0 7 7 A G T < S+ 0 0 62 -3,-0.6 -1,-0.1 1,-0.2 4,-0.1 -0.067 85.1 76.7 -90.5 32.4 -11.4 6.3 -0.9 8 8 A S T 3> S+ 0 0 61 -3,-0.2 4,-1.6 2,-0.1 -1,-0.2 0.591 82.8 60.5-111.8 -22.5 -9.5 3.0 -0.6 9 9 A W H <> S+ 0 0 168 -3,-0.8 4,-2.1 1,-0.2 -2,-0.1 0.877 93.5 65.8 -72.4 -39.3 -8.0 2.9 -4.0 10 10 A I H > S+ 0 0 66 -4,-0.5 4,-1.8 1,-0.2 -1,-0.2 0.860 104.6 46.7 -48.9 -39.4 -6.2 6.1 -3.4 11 11 A L H > S+ 0 0 102 2,-0.2 4,-2.0 1,-0.2 3,-0.3 0.973 113.2 44.7 -67.3 -57.0 -4.3 4.1 -0.8 12 12 A V H X S+ 0 0 93 -4,-1.6 4,-0.6 1,-0.2 -2,-0.2 0.667 109.3 64.2 -61.2 -15.4 -3.6 1.2 -3.0 13 13 A L H X S+ 0 0 34 -4,-2.1 4,-3.1 2,-0.2 3,-0.3 0.959 102.2 43.5 -72.1 -54.1 -2.7 3.9 -5.6 14 14 A F H X S+ 0 0 79 -4,-1.8 4,-2.3 -3,-0.3 5,-0.2 0.931 115.4 48.2 -56.2 -50.4 0.3 5.2 -3.7 15 15 A V H X S+ 0 0 58 -4,-2.0 4,-2.0 1,-0.2 -1,-0.3 0.740 113.6 51.3 -62.6 -22.8 1.5 1.8 -2.8 16 16 A A H X S+ 0 0 37 -4,-0.6 4,-1.5 -3,-0.3 -2,-0.2 0.901 106.8 50.5 -79.6 -45.3 1.0 1.1 -6.5 17 17 A M H X S+ 0 0 120 -4,-3.1 4,-1.5 2,-0.2 -2,-0.2 0.865 116.5 42.7 -59.8 -38.6 2.9 4.1 -7.7 18 18 A W H X S+ 0 0 167 -4,-2.3 4,-1.7 2,-0.2 3,-0.5 0.960 112.3 51.0 -71.8 -54.0 5.8 3.1 -5.5 19 19 A S H < S+ 0 0 83 -4,-2.0 -2,-0.2 1,-0.3 -1,-0.2 0.732 108.4 57.5 -55.0 -22.2 5.6 -0.6 -6.3 20 20 A D H >X S+ 0 0 111 -4,-1.5 4,-0.9 1,-0.2 3,-0.8 0.913 103.8 48.1 -74.6 -45.6 5.7 0.7 -9.9 21 21 A V H 3< S+ 0 0 102 -4,-1.5 2,-0.3 -3,-0.5 -2,-0.2 0.750 106.2 62.6 -65.6 -23.8 8.9 2.5 -9.5 22 22 A G T 3< S+ 0 0 33 -4,-1.7 -1,-0.3 1,-0.1 -2,-0.1 -0.257 97.3 59.5 -96.3 44.5 10.2 -0.7 -7.9 23 23 A L T <4 S+ 0 0 131 -3,-0.8 2,-1.0 -2,-0.3 4,-0.5 0.554 103.6 37.4-130.7 -59.1 9.7 -2.7 -11.1 24 24 A C S < S+ 0 0 105 -4,-0.9 -2,-0.0 1,-0.2 -4,-0.0 -0.679 127.0 30.5-103.2 75.9 11.8 -1.3 -13.9 25 25 A K S S+ 0 0 157 -2,-1.0 -1,-0.2 -3,-0.1 -3,-0.1 0.054 101.2 73.3 166.7 -31.5 14.9 -0.2 -12.0 26 26 A K S S- 0 0 167 -5,-0.2 -2,-0.1 0, 0.0 -4,-0.1 0.725 88.9-151.4 -75.3 -22.7 15.1 -2.7 -9.2 27 27 A R - 0 0 190 -4,-0.5 -3,-0.1 2,-0.0 2,-0.0 0.424 20.5 -76.7 62.4 151.4 16.2 -5.3 -11.7 28 28 A P - 0 0 108 0, 0.0 -5,-0.0 0, 0.0 0, 0.0 -0.207 31.5-124.2 -75.0 169.5 15.6 -9.0 -11.3 29 29 A K 0 0 215 -2,-0.0 -2,-0.0 0, 0.0 0, 0.0 0.957 360.0 360.0 -77.7 -56.6 17.6 -11.3 -8.9 30 30 A P 0 0 151 0, 0.0 0, 0.0 0, 0.0 0, 0.0 -0.126 360.0 360.0 -74.9 360.0 18.7 -13.9 -11.5