==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=12-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION/DNA 30-MAR-98 1SKN . COMPND 2 MOLECULE: DNA (5'- . SOURCE 2 SYNTHETIC: YES; . AUTHOR P.B.RUPERT,G.W.DAUGHDRILL,B.BOWERMAN,B.W.MATTHEWS . 74 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5998.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 56 75.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 8.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 47 63.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 456 P G 0 0 137 0, 0.0 2,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-126.6 32.6 16.9 15.6 2 457 P R - 0 0 244 2,-0.0 2,-0.2 0, 0.0 0, 0.0 -0.775 360.0-129.2 171.7 148.2 31.5 19.6 13.0 3 458 P Q - 0 0 106 -2,-0.2 2,-0.1 1,-0.1 3,-0.0 -0.564 30.5-108.9 -96.1 150.9 31.7 22.9 11.4 4 459 P S > - 0 0 39 -2,-0.2 4,-2.1 1,-0.1 5,-0.1 -0.403 26.5-123.3 -71.4 154.5 29.2 25.5 10.4 5 460 P K H > S+ 0 0 134 2,-0.2 4,-3.0 1,-0.2 -1,-0.1 0.931 117.3 55.0 -64.9 -40.0 28.5 26.0 6.8 6 461 P D H > S+ 0 0 16 1,-0.3 4,-2.7 2,-0.2 5,-0.3 0.912 107.4 51.0 -61.7 -34.7 29.5 29.6 7.3 7 462 P E H > S+ 0 0 49 1,-0.2 4,-1.9 2,-0.2 -1,-0.3 0.912 110.7 46.8 -67.1 -36.7 32.8 28.3 8.6 8 463 P Q H X S+ 0 0 77 -4,-2.1 4,-4.3 2,-0.2 -2,-0.2 0.917 112.7 52.2 -66.9 -37.8 33.1 26.1 5.6 9 464 P L H X S+ 0 0 42 -4,-3.0 4,-3.7 2,-0.3 -2,-0.2 0.923 109.2 46.3 -59.0 -57.4 32.2 29.2 3.5 10 465 P A H <>S+ 0 0 5 -4,-2.7 5,-2.7 2,-0.2 -1,-0.2 0.876 117.6 47.2 -54.7 -40.3 34.8 31.4 5.0 11 466 P S H ><5S+ 0 0 65 -4,-1.9 3,-2.0 -5,-0.3 -2,-0.3 0.970 111.9 46.5 -72.5 -51.4 37.2 28.5 4.6 12 467 P D H 3<5S+ 0 0 93 -4,-4.3 -2,-0.2 1,-0.3 -3,-0.2 0.943 116.0 47.6 -54.3 -45.9 36.3 27.7 1.0 13 468 P N T 3<5S- 0 0 33 -4,-3.7 -1,-0.3 -5,-0.2 -2,-0.2 0.297 108.5-124.3 -80.5 10.3 36.5 31.4 0.2 14 469 P E T < 5 - 0 0 170 -3,-2.0 -3,-0.2 1,-0.2 -4,-0.1 0.840 40.0-176.1 48.5 45.8 39.8 31.9 1.9 15 470 P L < - 0 0 17 -5,-2.7 -1,-0.2 -6,-0.2 4,-0.1 -0.382 31.7-128.9 -67.8 136.2 38.5 34.7 4.2 16 471 P P S S+ 0 0 61 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 0.559 90.0 39.6 -66.4 -3.9 41.2 36.2 6.3 17 472 P V S S- 0 0 24 -7,-0.1 2,-0.2 16,-0.0 -2,-0.1 -0.872 88.8-100.1-135.1 170.4 39.0 35.7 9.4 18 473 P S > - 0 0 35 -2,-0.3 4,-5.2 1,-0.1 5,-0.2 -0.508 27.0-115.8 -95.3 157.8 36.7 33.1 10.8 19 474 P A H > S+ 0 0 6 2,-0.3 4,-2.7 1,-0.2 5,-0.2 0.917 121.9 48.9 -53.8 -49.5 32.9 33.0 10.7 20 475 P F H > S+ 0 0 135 1,-0.2 4,-1.8 2,-0.2 5,-0.3 0.951 114.6 45.4 -56.8 -50.6 33.0 33.3 14.4 21 476 P Q H > S+ 0 0 98 2,-0.2 4,-3.4 1,-0.2 -2,-0.3 0.949 110.5 53.9 -56.4 -50.5 35.4 36.2 14.2 22 477 P I H < S+ 0 0 0 -4,-5.2 -2,-0.2 1,-0.2 -1,-0.2 0.969 113.9 40.0 -49.5 -58.7 33.5 37.8 11.5 23 478 P S H < S+ 0 0 6 -4,-2.7 -1,-0.2 1,-0.2 -2,-0.2 0.704 125.1 35.4 -65.6 -25.7 30.2 37.8 13.5 24 479 P E H < S+ 0 0 79 -4,-1.8 -1,-0.2 -3,-0.3 -2,-0.2 0.647 88.1 104.0-106.6 -19.8 31.7 38.7 16.9 25 480 P M S < S- 0 0 20 -4,-3.4 5,-0.1 -5,-0.3 2,-0.1 -0.271 82.4-100.6 -59.7 149.4 34.4 41.0 16.0 26 481 P S >> - 0 0 54 1,-0.1 4,-3.2 2,-0.1 3,-1.3 -0.351 27.4-112.1 -70.1 152.0 33.5 44.5 16.8 27 482 P L H 3> S+ 0 0 100 1,-0.3 4,-2.5 2,-0.2 5,-0.2 0.907 118.8 49.2 -45.2 -50.9 32.4 46.8 14.1 28 483 P S H 3> S+ 0 0 78 1,-0.2 4,-1.1 2,-0.2 -1,-0.3 0.788 110.6 52.4 -69.3 -15.8 35.4 48.9 14.3 29 484 P E H X> S+ 0 0 109 -3,-1.3 4,-2.2 2,-0.2 3,-0.8 0.963 108.0 49.4 -75.3 -48.7 37.4 45.8 14.2 30 485 P L H 3X S+ 0 0 12 -4,-3.2 4,-3.1 1,-0.3 -2,-0.2 0.858 104.8 60.0 -54.5 -38.0 35.7 44.6 11.1 31 486 P Q H 3X S+ 0 0 111 -4,-2.5 4,-2.1 -5,-0.3 -1,-0.3 0.915 102.3 51.1 -65.3 -35.4 36.3 47.8 9.5 32 487 P Q H - 0 0 62 -2,-0.4 4,-2.6 1,-0.1 5,-0.1 -0.122 34.7-108.2 -48.8 162.5 36.8 40.4 -3.9 41 496 P E H > S+ 0 0 147 2,-0.2 4,-3.5 1,-0.2 5,-0.3 0.911 122.8 55.8 -56.6 -48.5 33.3 41.8 -3.8 42 497 P Y H > S+ 0 0 117 2,-0.2 4,-3.4 1,-0.2 -1,-0.2 0.979 108.6 47.9 -50.3 -57.7 31.9 38.3 -3.5 43 498 P Q H > S+ 0 0 36 1,-0.2 4,-2.9 2,-0.2 -2,-0.2 0.917 113.1 49.8 -51.1 -41.8 34.1 37.9 -0.4 44 499 P R H X S+ 0 0 80 -4,-2.6 4,-1.4 2,-0.2 -1,-0.2 0.892 112.2 45.9 -61.8 -42.2 32.9 41.2 0.9 45 500 P Q H >X S+ 0 0 102 -4,-3.5 4,-2.3 2,-0.2 3,-1.0 0.985 111.0 53.5 -63.0 -54.8 29.3 40.3 0.4 46 501 P L H 3X S+ 0 0 6 -4,-3.4 4,-2.9 -5,-0.3 3,-0.5 0.914 102.9 56.6 -42.6 -58.1 29.9 37.0 2.0 47 502 P I H 3X S+ 0 0 4 -4,-2.9 4,-1.6 1,-0.3 -1,-0.3 0.836 108.7 48.3 -50.1 -34.3 31.4 38.6 5.0 48 503 P R H X S+ 0 0 142 -4,-2.8 3,-1.6 -5,-0.2 4,-1.2 0.857 104.3 40.7 -35.6 -99.6 18.3 31.9 20.6 62 517 P T H >X>S+ 0 0 62 -4,-1.0 4,-2.9 1,-0.3 3,-1.3 0.723 108.9 62.4 -15.1 -73.8 17.2 34.4 23.2 63 518 P C H 3X5S+ 0 0 50 -4,-1.6 4,-4.2 1,-0.3 -1,-0.3 0.788 109.0 42.2 -17.2 -69.6 13.9 34.9 21.4 64 519 P R H S+ 0 0 77 -4,-3.1 4,-1.4 -5,-0.3 5,-0.6 0.952 109.3 49.0 -77.3 -64.6 10.7 31.1 29.3 70 525 P R H <5S+ 0 0 166 -4,-2.0 -2,-0.2 -5,-0.2 -3,-0.2 0.766 127.0 20.9 -47.3 -39.4 7.9 33.5 29.4 71 526 P H T <5S+ 0 0 148 -4,-1.7 -3,-0.2 -5,-0.3 -2,-0.1 0.812 108.7 63.9-100.1 -79.0 5.2 31.0 28.6 72 527 P D T 45S- 0 0 128 -5,-0.2 -3,-0.1 1,-0.1 -2,-0.1 0.593 132.9 -3.8 -5.1 -62.0 6.2 27.4 29.3 73 528 P K T <5 0 0 180 -4,-1.4 -3,-0.1 -5,-0.4 -1,-0.1 0.806 360.0 360.0-104.6 -83.5 6.4 28.5 33.0 74 529 P M < 0 0 185 -5,-0.6 -4,-0.2 0, 0.0 -3,-0.0 0.910 360.0 360.0 -66.4 360.0 5.9 32.1 34.0