==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=11-DEC-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN TRANSPORT 29-JUN-11 3SNS . COMPND 2 MOLECULE: LIPOPROTEIN 34; . SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; . AUTHOR K.H.KIM,S.AULAKH,W.TAN,M.PAETZEL . 119 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6555.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 86 72.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 35 29.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 0.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 2 1.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 0.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 11 9.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 9.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 28 23.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 1 0 1 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 224 A A 0 0 164 0, 0.0 2,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 173.3 -30.6 15.5 14.5 2 225 A S - 0 0 82 2,-0.1 118,-0.0 1,-0.0 0, 0.0 -0.522 360.0-108.2-109.4 175.4 -27.1 14.1 13.8 3 226 A T S S+ 0 0 95 -2,-0.2 -1,-0.0 2,-0.1 117,-0.0 0.541 76.6 121.4 -80.5 -3.6 -23.8 15.2 12.3 4 227 A T - 0 0 68 1,-0.0 2,-0.4 113,-0.0 116,-0.1 -0.159 50.9-150.6 -55.9 148.3 -24.3 13.0 9.2 5 228 A M - 0 0 14 111,-0.2 114,-0.2 110,-0.2 18,-0.1 -0.996 23.1-109.6-122.0 135.5 -24.3 14.8 5.8 6 229 A D - 0 0 64 -2,-0.4 16,-2.7 16,-0.3 2,-0.4 -0.347 34.1-165.4 -62.1 141.0 -26.3 13.5 2.9 7 230 A V E +A 21 0A 3 14,-0.2 2,-0.3 15,-0.1 14,-0.2 -0.992 9.2 176.1-133.7 134.1 -24.2 12.0 0.0 8 231 A Q E -A 20 0A 98 12,-2.5 12,-3.0 -2,-0.4 2,-0.3 -0.973 30.4-114.8-136.6 149.9 -25.4 11.2 -3.5 9 232 A S E +A 19 0A 54 -2,-0.3 2,-0.3 10,-0.2 10,-0.2 -0.638 45.9 154.4 -81.0 146.6 -23.8 9.9 -6.7 10 233 A A E -A 18 0A 39 8,-3.0 8,-2.3 -2,-0.3 2,-0.4 -0.855 36.3-111.0-154.2-179.2 -23.8 12.3 -9.7 11 234 A A E -A 17 0A 55 -2,-0.3 5,-0.0 6,-0.2 8,-0.0 -0.977 24.8-127.1-124.6 150.4 -22.0 13.2 -12.9 12 235 A D > - 0 0 31 4,-3.0 3,-1.8 -2,-0.4 6,-0.1 -0.096 46.2 -81.6 -80.6-176.3 -19.9 16.2 -13.7 13 236 A D T 3 S+ 0 0 162 1,-0.3 -1,-0.1 2,-0.1 -2,-0.0 0.545 132.0 48.2 -71.8 0.0 -20.5 18.5 -16.8 14 237 A T T 3 S- 0 0 105 2,-0.1 -1,-0.3 0, 0.0 -2,-0.0 0.277 123.4-101.7-112.4 1.2 -18.6 16.0 -19.1 15 238 A G S < S+ 0 0 46 -3,-1.8 -2,-0.1 1,-0.3 -5,-0.0 0.505 75.2 137.1 93.0 10.1 -20.5 13.0 -17.8 16 239 A L - 0 0 71 1,-0.1 -4,-3.0 -5,-0.0 -1,-0.3 -0.592 58.3 -95.4 -94.6 150.1 -18.0 11.5 -15.4 17 240 A P E +A 11 0A 15 0, 0.0 2,-0.3 0, 0.0 86,-0.3 -0.233 50.8 152.0 -68.2 141.9 -18.9 10.2 -12.0 18 241 A M E -A 10 0A 23 -8,-2.3 -8,-3.0 76,-0.1 2,-0.3 -0.952 38.8-113.6-153.3 169.1 -18.6 12.2 -8.8 19 242 A L E -AB 9 93A 0 74,-3.0 74,-2.5 -2,-0.3 2,-0.4 -0.807 18.8-151.7-101.6 147.5 -20.2 12.4 -5.4 20 243 A V E -AB 8 92A 11 -12,-3.0 -12,-2.5 -2,-0.3 2,-0.4 -0.994 11.9-163.4-117.5 130.7 -22.3 15.4 -4.2 21 244 A V E -AB 7 91A 0 70,-3.2 70,-2.1 -2,-0.4 2,-2.0 -0.911 25.0-118.8-117.4 141.1 -22.4 16.0 -0.4 22 245 A R S S+ 0 0 138 -16,-2.7 -16,-0.3 -2,-0.4 68,-0.2 -0.417 81.7 67.6 -88.9 69.3 -25.0 18.2 1.2 23 246 A G S S- 0 0 6 -2,-2.0 64,-0.2 -18,-0.1 -2,-0.2 -0.929 85.2 -86.7-168.7 160.5 -22.9 21.0 2.8 24 247 A P >> - 0 0 56 0, 0.0 4,-2.5 0, 0.0 3,-0.7 -0.257 43.4-101.1 -69.1 164.4 -20.8 23.9 1.5 25 248 A F H 3> S+ 0 0 35 65,-0.4 4,-3.0 63,-0.4 5,-0.3 0.873 120.0 57.7 -51.4 -47.8 -17.1 23.7 0.6 26 249 A N H 3> S+ 0 0 79 1,-0.2 4,-1.3 2,-0.2 -1,-0.3 0.898 112.8 40.0 -56.4 -39.0 -16.0 25.2 3.9 27 250 A V H <> S+ 0 0 50 -3,-0.7 4,-2.3 2,-0.2 -2,-0.2 0.959 117.7 44.9 -74.1 -47.0 -17.7 22.5 5.9 28 251 A V H X S+ 0 0 0 -4,-2.5 4,-1.9 1,-0.2 -2,-0.2 0.928 111.5 53.7 -67.7 -39.8 -16.9 19.5 3.7 29 252 A W H < S+ 0 0 22 -4,-3.0 -1,-0.2 -5,-0.3 -2,-0.2 0.897 113.0 44.0 -57.0 -46.3 -13.2 20.6 3.3 30 253 A Q H < S+ 0 0 119 -4,-1.3 4,-0.4 -5,-0.3 -1,-0.2 0.858 115.9 46.0 -70.8 -34.6 -12.8 20.8 7.1 31 254 A R H X S+ 0 0 75 -4,-2.3 4,-2.0 1,-0.2 -1,-0.2 0.695 95.2 80.8 -75.1 -28.7 -14.6 17.5 7.9 32 255 A L H X S+ 0 0 0 -4,-1.9 4,-3.4 1,-0.2 5,-0.3 0.886 81.6 55.9 -54.7 -48.3 -12.9 15.5 5.2 33 256 A P H > S+ 0 0 57 0, 0.0 4,-1.8 0, 0.0 -1,-0.2 0.930 114.8 38.5 -59.5 -43.6 -9.5 14.5 6.8 34 257 A A H > S+ 0 0 70 -4,-0.4 4,-1.1 2,-0.2 -2,-0.2 0.909 118.3 49.7 -74.0 -33.2 -11.1 12.9 9.9 35 258 A A H >X S+ 0 0 7 -4,-2.0 3,-0.7 1,-0.2 4,-0.6 0.954 110.1 50.8 -65.6 -44.1 -13.9 11.3 7.8 36 259 A L H ><>S+ 0 0 0 -4,-3.4 5,-2.5 1,-0.3 3,-1.4 0.879 102.7 60.8 -60.2 -39.8 -11.5 9.9 5.2 37 260 A E H ><5S+ 0 0 154 -4,-1.8 3,-1.4 -5,-0.3 -1,-0.3 0.847 97.3 60.0 -58.1 -34.1 -9.3 8.4 8.0 38 261 A K H <<5S+ 0 0 98 -4,-1.1 -1,-0.3 -3,-0.7 -2,-0.2 0.727 107.5 44.9 -65.5 -25.0 -12.3 6.3 9.0 39 262 A V T <<5S- 0 0 1 -3,-1.4 -1,-0.3 -4,-0.6 21,-0.2 0.175 126.2 -94.2-111.8 21.3 -12.5 4.7 5.6 40 263 A G T < 5S+ 0 0 17 -3,-1.4 18,-2.5 1,-0.2 2,-0.7 0.524 83.2 131.6 83.2 16.1 -8.7 4.0 5.2 41 264 A M E < -C 57 0A 4 -5,-2.5 2,-0.5 16,-0.2 -1,-0.2 -0.848 38.0-164.3-106.9 116.1 -7.9 7.2 3.3 42 265 A K E -C 56 0A 138 14,-2.7 14,-2.3 -2,-0.7 2,-0.5 -0.837 17.5-134.3 -98.2 126.1 -4.9 9.1 4.6 43 266 A V E +C 55 0A 46 -2,-0.5 12,-0.2 12,-0.2 3,-0.1 -0.698 28.2 173.2 -79.4 116.4 -4.5 12.8 3.5 44 267 A T E - 0 0 84 10,-2.7 2,-0.3 -2,-0.5 -1,-0.2 0.657 66.7 -5.5 -98.3 -18.2 -0.7 13.1 2.6 45 268 A D E -C 54 0A 118 9,-1.1 9,-3.0 2,-0.0 -1,-0.4 -0.955 66.5-175.2-168.2 153.1 -0.8 16.7 1.1 46 269 A S E -C 53 0A 61 -2,-0.3 2,-0.4 7,-0.2 7,-0.2 -0.990 18.9-158.2-158.0 154.0 -3.6 19.2 0.3 47 270 A T E >>> -C 52 0A 44 5,-2.8 5,-1.7 -2,-0.3 4,-0.9 -0.872 6.6-171.2-133.5 102.3 -4.1 22.6 -1.3 48 271 A R G >45S+ 0 0 106 -2,-0.4 3,-0.7 1,-0.2 -1,-0.1 0.891 85.2 58.2 -64.5 -36.4 -7.3 24.3 -0.1 49 272 A S G 345S+ 0 0 114 1,-0.3 -1,-0.2 2,-0.1 -2,-0.0 0.772 114.7 37.4 -63.8 -27.1 -7.1 27.1 -2.6 50 273 A Q G <45S- 0 0 141 -3,-0.8 -1,-0.3 2,-0.2 -2,-0.2 0.475 108.5-124.8 -97.3 -4.3 -7.2 24.6 -5.5 51 274 A G T <<5 + 0 0 4 -4,-0.9 33,-3.1 -3,-0.7 2,-0.4 0.686 63.7 135.8 73.3 19.6 -9.6 22.3 -3.7 52 275 A N E < -CD 47 83A 39 -5,-1.7 -5,-2.8 31,-0.2 2,-0.4 -0.865 32.6-176.8-118.3 134.9 -7.3 19.2 -4.0 53 276 A M E -CD 46 82A 1 29,-2.6 29,-3.1 -2,-0.4 2,-0.5 -0.984 18.4-144.0-121.5 134.0 -6.3 16.5 -1.5 54 277 A A E -CD 45 81A 13 -9,-3.0 -10,-2.7 -2,-0.4 -9,-1.1 -0.865 27.8-173.7 -94.9 128.8 -3.8 13.8 -2.2 55 278 A V E -CD 43 80A 1 25,-2.9 25,-3.0 -2,-0.5 2,-0.5 -0.949 22.7-153.0-125.5 142.3 -4.9 10.6 -0.5 56 279 A T E -CD 42 79A 45 -14,-2.3 -14,-2.7 -2,-0.4 2,-0.5 -0.977 22.0-150.2-113.6 126.5 -3.4 7.2 0.0 57 280 A Y E +CD 41 78A 5 21,-3.5 21,-2.2 -2,-0.5 -16,-0.2 -0.847 20.2 177.8-106.4 125.5 -6.0 4.4 0.4 58 281 A K - 0 0 167 -18,-2.5 18,-0.0 -2,-0.5 19,-0.0 -0.977 34.1-127.6-119.8 111.6 -5.5 1.2 2.5 59 282 A P - 0 0 47 0, 0.0 -19,-0.1 0, 0.0 2,-0.1 -0.185 23.8-110.7 -61.1 147.3 -8.8 -0.8 2.3 60 283 A L - 0 0 34 -21,-0.2 12,-0.1 1,-0.1 -21,-0.0 -0.409 35.3 -99.1 -68.6 154.8 -10.3 -1.9 5.6 61 284 A S 0 0 65 1,-0.1 4,-2.3 -2,-0.1 5,-0.2 -0.317 360.0 360.0 -60.1 160.2 -10.4 -5.6 6.6 62 285 A D 0 0 155 2,-0.2 4,-1.8 3,-0.1 -1,-0.1 0.917 360.0 360.0 -52.2 360.0 -13.6 -7.4 5.9 63 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 64 287 A D > 0 0 95 0, 0.0 4,-2.4 0, 0.0 -2,-0.2 0.000 360.0 360.0 360.0 -38.3 -13.7 -3.4 9.8 65 288 A W H >> + 0 0 9 -4,-2.3 4,-2.3 1,-0.2 5,-1.7 0.924 360.0 53.0 -58.5 -41.7 -15.9 -2.7 6.8 66 289 A Q H 45S+ 0 0 172 -4,-1.8 -1,-0.2 -5,-0.2 -4,-0.1 0.919 108.5 48.0 -56.5 -46.8 -18.6 -4.5 8.7 67 290 A E H 45S+ 0 0 167 1,-0.2 -1,-0.2 2,-0.1 -2,-0.2 0.914 113.1 48.3 -58.8 -44.3 -18.0 -2.3 11.8 68 291 A L H <5S- 0 0 35 -4,-2.4 -1,-0.2 2,-0.2 -2,-0.2 0.841 113.5-121.4 -63.4 -41.3 -18.2 0.9 9.6 69 292 A G T <5S+ 0 0 55 -4,-2.3 2,-0.3 1,-0.3 -3,-0.2 0.833 78.7 83.3 97.5 38.7 -21.4 -0.4 7.9 70 293 A A S - E 0 90A 58 3,-2.1 3,-1.3 -2,-0.8 2,-0.8 -0.211 54.2-113.9-119.3 42.6 -21.5 23.9 -5.4 88 311 A D T 3 S+ 0 0 129 1,-0.3 -63,-0.4 0, 0.0 -1,-0.2 -0.542 102.2 10.7 68.2-102.2 -22.8 26.6 -3.0 89 312 A N T 3 S+ 0 0 91 -2,-0.8 2,-0.3 -65,-0.1 -1,-0.3 0.471 136.2 50.2 -80.8 -12.0 -24.8 24.7 -0.3 90 313 A R E < S- E 0 87A 91 -3,-1.3 -3,-2.1 -68,-0.2 -65,-0.4 -0.811 71.9-147.8-119.0 168.7 -23.4 21.4 -1.7 91 314 A S E -BE 21 86A 0 -70,-2.1 -70,-3.2 -2,-0.3 2,-0.3 -0.971 10.6-136.2-133.4 148.2 -19.9 20.2 -2.5 92 315 A S E -BE 20 85A 16 -7,-1.7 -7,-2.4 -2,-0.3 2,-0.4 -0.820 10.7-162.9-102.5 148.2 -18.7 17.8 -5.1 93 316 A L E +BE 19 84A 0 -74,-2.5 -74,-3.0 -2,-0.3 2,-0.5 -0.973 11.4 177.9-125.4 121.3 -16.1 15.1 -4.4 94 317 A Q E - E 0 83A 37 -11,-2.3 -11,-2.7 -2,-0.4 2,-0.4 -0.972 12.6-155.1-128.2 120.2 -14.4 13.6 -7.4 95 318 A F E - E 0 82A 2 -2,-0.5 8,-0.9 -13,-0.2 2,-0.3 -0.769 13.0-178.9 -91.0 137.1 -11.8 10.9 -7.1 96 319 A I E -FE 102 81A 46 -15,-2.4 -15,-2.4 -2,-0.4 6,-0.2 -0.961 24.6-126.2-127.1 145.5 -9.1 10.3 -9.7 97 320 A D > - 0 0 32 4,-2.4 3,-1.9 -2,-0.3 -17,-0.2 -0.314 46.0 -93.0 -71.3 171.3 -6.3 7.8 -9.9 98 321 A P T 3 S+ 0 0 74 0, 0.0 -18,-0.1 0, 0.0 -1,-0.1 0.710 127.3 60.5 -69.3 -11.6 -2.8 9.3 -10.6 99 322 A K T 3 S- 0 0 130 2,-0.1 0, 0.0 0, 0.0 0, 0.0 0.406 123.4-104.8 -88.4 -2.0 -3.3 8.8 -14.4 100 323 A G S < S+ 0 0 43 -3,-1.9 2,-0.4 1,-0.3 -5,-0.0 0.394 71.7 148.9 94.4 -1.1 -6.3 11.1 -14.1 101 324 A H - 0 0 116 -5,-0.1 -4,-2.4 1,-0.1 -1,-0.3 -0.520 38.9-139.6 -70.3 128.1 -8.9 8.3 -14.4 102 325 A T B -F 96 0A 35 -2,-0.4 -6,-0.2 -6,-0.2 -84,-0.1 -0.269 31.1 -89.4 -77.7 162.3 -12.2 8.8 -12.7 103 326 A L - 0 0 10 -8,-0.9 -1,-0.1 -86,-0.3 -28,-0.0 -0.353 45.0-101.5 -65.0 158.7 -13.9 6.1 -10.8 104 327 A T > - 0 0 75 1,-0.1 4,-2.9 -3,-0.1 5,-0.2 -0.293 34.4-108.0 -71.6 161.4 -16.4 3.8 -12.6 105 328 A Q H > S+ 0 0 129 1,-0.2 4,-3.0 2,-0.2 5,-0.1 0.901 122.2 52.4 -58.3 -40.1 -20.1 4.5 -12.0 106 329 A S H > S+ 0 0 92 2,-0.2 4,-2.7 1,-0.2 -1,-0.2 0.906 111.2 44.5 -61.6 -45.6 -20.2 1.3 -9.8 107 330 A Q H > S+ 0 0 43 2,-0.2 4,-1.2 1,-0.2 -2,-0.2 0.918 115.5 47.7 -63.1 -48.2 -17.2 2.4 -7.6 108 331 A N H >X S+ 0 0 3 -4,-2.9 3,-0.6 2,-0.2 4,-0.6 0.945 112.3 49.8 -61.6 -40.8 -18.6 5.9 -7.3 109 332 A D H >X S+ 0 0 79 -4,-3.0 3,-1.4 1,-0.2 4,-0.5 0.926 108.9 53.2 -60.1 -46.9 -22.0 4.4 -6.5 110 333 A A H 3X S+ 0 0 39 -4,-2.7 4,-0.9 1,-0.2 -1,-0.2 0.700 100.9 61.5 -59.3 -28.1 -20.4 2.1 -3.8 111 334 A L H < S+ 0 0 17 -4,-2.4 3,-0.7 1,-0.2 -2,-0.2 0.935 110.6 53.0 -68.6 -44.3 -20.8 6.1 7.2 118 341 A A H 3< S+ 0 0 4 -4,-2.2 -1,-0.2 1,-0.2 -2,-0.2 0.850 109.3 48.3 -59.1 -43.1 -17.6 8.2 7.4 119 342 A F H 3< 0 0 4 -4,-2.3 -1,-0.2 -114,-0.2 -2,-0.2 0.666 360.0 360.0 -73.8 -17.1 -19.5 11.4 8.1 120 343 A S << 0 0 71 -4,-0.9 -118,-0.0 -3,-0.7 -3,-0.0 -0.498 360.0 360.0 -78.1 360.0 -21.6 9.8 10.8