==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=12-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER LIPID TRANSPORT 14-MAR-04 1SOH . COMPND 2 MOLECULE: APOLIPOPROTEIN C-II; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR C.A.MACRAILD,G.J.HOWLETT,P.R.GOOLEY . 67 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6685.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 48 71.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 18 26.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 25 37.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 4 6.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 6 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 13 A T > 0 0 152 0, 0.0 4,-0.7 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0 -89.9 88.8 -19.7 -3.9 2 14 A F H > + 0 0 150 1,-0.2 4,-1.0 2,-0.2 3,-0.2 0.768 360.0 55.9 -74.1 -25.4 86.8 -17.5 -1.5 3 15 A L H > S+ 0 0 110 1,-0.2 4,-2.7 2,-0.2 -1,-0.2 0.779 94.6 67.4 -75.9 -27.7 89.9 -15.7 -0.6 4 16 A T H > S+ 0 0 72 2,-0.2 4,-0.7 1,-0.2 -1,-0.2 0.866 97.6 53.7 -60.5 -36.9 90.6 -14.8 -4.2 5 17 A Q H >X S+ 0 0 121 -4,-0.7 3,-1.4 2,-0.2 4,-0.6 0.967 112.3 41.6 -62.7 -53.2 87.5 -12.6 -4.2 6 18 A V H >X>S+ 0 0 60 -4,-1.0 4,-3.8 1,-0.3 3,-1.7 0.865 104.2 68.1 -62.1 -34.5 88.7 -10.6 -1.2 7 19 A K H 3X5S+ 0 0 122 -4,-2.7 4,-0.6 1,-0.3 -1,-0.3 0.788 96.6 55.3 -55.2 -25.7 92.2 -10.6 -2.7 8 20 A E H <<5S+ 0 0 156 -3,-1.4 -1,-0.3 -4,-0.7 -2,-0.2 0.752 118.0 33.6 -77.8 -25.0 90.6 -8.4 -5.3 9 21 A S H XX5S+ 0 0 62 -3,-1.7 3,-0.8 -4,-0.6 4,-0.7 0.884 116.1 50.5 -94.5 -53.5 89.5 -6.0 -2.6 10 22 A L H 3<5S+ 0 0 101 -4,-3.8 -3,-0.2 1,-0.3 -2,-0.1 0.746 118.3 44.9 -58.1 -20.5 92.3 -6.3 0.0 11 23 A S T >X> S+ 0 0 67 2,-0.2 4,-2.2 -5,-0.2 3,-0.5 0.926 99.1 60.6 -77.3 -47.5 96.8 2.5 -4.3 17 29 A A H 3< S+ 0 0 69 -4,-1.0 -1,-0.2 1,-0.3 -2,-0.2 0.791 110.8 44.9 -49.8 -28.0 99.2 2.9 -1.4 18 30 A K H >> S+ 0 0 130 -4,-0.5 4,-1.2 2,-0.2 3,-1.2 0.777 106.1 58.5 -86.7 -30.3 101.8 2.3 -4.1 19 31 A T H << S+ 0 0 86 -4,-0.9 -2,-0.2 -3,-0.5 4,-0.2 0.806 114.6 38.1 -68.8 -28.7 100.2 4.7 -6.6 20 32 A A T 3X S+ 0 0 50 -4,-2.2 4,-0.6 2,-0.1 -1,-0.3 0.068 106.4 71.8-108.5 22.4 100.6 7.5 -4.0 21 33 A A H <> S+ 0 0 17 -3,-1.2 4,-3.3 -5,-0.2 5,-0.2 0.858 93.8 45.8 -99.7 -55.8 104.0 6.3 -2.7 22 34 A Q H < S+ 0 0 85 -4,-1.2 4,-0.5 1,-0.2 -2,-0.1 0.731 112.0 59.5 -60.6 -20.9 106.4 7.1 -5.6 23 35 A N H >4 S+ 0 0 103 -5,-0.2 3,-0.7 2,-0.2 4,-0.4 0.980 115.1 28.6 -71.3 -59.8 104.6 10.5 -5.6 24 36 A L H ><>S+ 0 0 101 -4,-0.6 3,-1.7 1,-0.2 5,-1.3 0.857 113.1 66.4 -70.1 -36.0 105.4 11.6 -2.1 25 37 A Y G ><5S+ 0 0 149 -4,-3.3 3,-1.2 1,-0.3 -1,-0.2 0.732 90.2 67.8 -57.8 -21.6 108.6 9.6 -2.0 26 38 A E G < 5S+ 0 0 139 -3,-0.7 -1,-0.3 -4,-0.5 -2,-0.2 0.833 100.2 46.6 -67.9 -32.8 109.8 12.0 -4.6 27 39 A K G X 5S- 0 0 127 -3,-1.7 3,-1.9 -4,-0.4 -1,-0.3 0.202 116.5-115.0 -93.6 15.1 109.8 14.8 -2.1 28 40 A T T < 5 - 0 0 86 -3,-1.2 -3,-0.2 1,-0.3 5,-0.1 0.878 60.3 -74.0 53.1 41.2 111.6 12.6 0.5 29 41 A Y T >> + 0 0 95 -3,-1.9 4,-0.6 -6,-0.3 3,-0.5 0.871 58.8 75.1 -43.6 -49.4 109.6 16.3 3.4 31 43 A P H 34 S- 0 0 105 0, 0.0 -1,-0.3 0, 0.0 -2,-0.1 0.723 130.6 -10.4 -39.0 -28.5 106.2 17.2 4.8 32 44 A A H <4>S+ 0 0 26 -3,-2.4 5,-0.6 2,-0.0 -2,-0.2 0.178 102.7 108.5-163.4 25.7 107.1 15.2 7.9 33 45 A V H X<5S+ 0 0 4 -4,-1.4 3,-0.9 -3,-0.5 6,-0.4 0.871 85.0 50.9 -76.1 -36.6 110.3 13.3 7.2 34 46 A D T 3<5S+ 0 0 104 -4,-0.6 -1,-0.2 1,-0.2 -4,-0.1 0.696 120.8 36.4 -72.0 -19.0 112.3 15.5 9.5 35 47 A E T 3 5S+ 0 0 145 -5,-0.2 -1,-0.2 4,-0.1 -2,-0.2 0.141 140.1 11.0-118.2 16.8 109.7 14.9 12.2 36 48 A K T < 5S+ 0 0 90 -3,-0.9 2,-0.5 3,-0.1 4,-0.3 0.315 122.2 52.9-155.2 -53.7 108.9 11.3 11.4 37 49 A L S S- 0 0 106 3,-0.0 3,-1.2 4,-0.0 -1,-0.1 0.573 77.0-160.8-131.2 -46.0 112.3 6.4 14.1 42 54 A S T 3 S- 0 0 95 1,-0.3 -3,-0.1 -6,-0.1 -5,-0.1 0.925 77.6 -58.7 56.6 48.2 115.7 7.3 15.5 43 55 A K T 3 S+ 0 0 158 1,-0.1 4,-0.3 2,-0.1 -1,-0.3 0.726 98.8 144.5 55.1 20.9 117.5 4.8 13.2 44 56 A S S < S- 0 0 74 -3,-1.2 -2,-0.1 1,-0.2 -1,-0.1 0.927 90.4 -16.8 -53.8 -48.2 115.3 2.2 14.8 45 57 A T S > S+ 0 0 60 2,-0.1 4,-1.0 3,-0.1 -1,-0.2 0.098 114.4 99.5-146.4 21.3 115.0 0.3 11.5 46 58 A A H > S+ 0 0 43 2,-0.2 4,-1.8 1,-0.2 3,-0.2 0.927 90.3 41.1 -76.4 -46.9 116.2 2.9 9.0 47 59 A A H 4 S+ 0 0 64 -4,-0.3 -1,-0.2 1,-0.2 -3,-0.1 0.748 113.2 56.7 -71.7 -23.5 119.7 1.6 8.7 48 60 A M H 4 S+ 0 0 151 -5,-0.1 -1,-0.2 1,-0.1 -2,-0.2 0.785 113.5 39.7 -77.4 -28.3 118.3 -1.9 8.7 49 61 A S H < + 0 0 40 -4,-1.0 -2,-0.2 -3,-0.2 -3,-0.1 0.962 61.6 161.8 -82.3 -71.5 116.1 -1.2 5.7 50 62 A T >X + 0 0 74 -4,-1.8 3,-4.4 -5,-0.1 4,-0.6 0.581 19.8 148.1 59.6 7.7 118.2 1.0 3.4 51 63 A Y H >> + 0 0 126 1,-0.3 4,-3.4 2,-0.2 3,-1.4 0.782 56.4 79.9 -42.6 -28.8 115.7 -0.0 0.8 52 64 A T H 34 S+ 0 0 143 1,-0.3 -1,-0.3 2,-0.2 4,-0.1 0.785 103.1 34.5 -51.0 -26.8 116.4 3.4 -0.6 53 65 A G H <4 S+ 0 0 50 -3,-4.4 -1,-0.3 2,-0.1 -2,-0.2 0.461 122.5 45.5-106.9 -4.7 119.5 1.7 -2.0 54 66 A I H S+ 0 0 60 -3,-1.4 4,-4.1 -4,-0.6 5,-0.5 0.520 77.2 100.6-112.3 -12.3 117.9 -1.7 -2.7 55 67 A F T <5S+ 0 0 106 -4,-3.4 4,-0.2 1,-0.3 -3,-0.1 0.792 104.8 24.2 -43.4 -30.9 114.7 -0.5 -4.4 56 68 A T T >5S+ 0 0 104 -5,-0.2 4,-2.8 2,-0.1 -1,-0.3 0.634 120.3 59.2-107.9 -23.4 116.4 -1.4 -7.6 57 69 A D H >5S+ 0 0 87 2,-0.2 4,-1.3 -6,-0.2 -2,-0.2 0.861 103.8 51.8 -74.0 -36.6 118.8 -4.0 -6.2 58 70 A Q H <5S+ 0 0 83 -4,-4.1 4,-0.3 1,-0.2 -1,-0.2 0.821 120.6 34.7 -68.7 -31.6 116.0 -6.1 -4.9 59 71 A V H >><>S+ 0 0 31 -4,-1.3 3,-2.2 1,-0.2 5,-0.7 0.759 93.2 72.7 -78.1 -25.9 118.4 -9.5 -8.9 62 74 A V T <45S+ 0 0 80 -3,-0.7 4,-0.4 -4,-0.3 3,-0.3 0.823 82.3 71.1 -57.8 -31.2 114.9 -10.8 -9.9 63 75 A L T 3<5S- 0 0 149 -4,-0.8 -1,-0.3 -3,-0.4 2,-0.2 0.757 124.8 -5.0 -56.9 -23.5 116.2 -10.8 -13.4 64 76 A K T < 5S+ 0 0 196 -3,-2.2 -1,-0.3 -4,-0.1 3,-0.2 -0.669 134.2 27.0-175.4 113.9 118.3 -13.7 -12.3 65 77 A G T 5S- 0 0 58 -3,-0.3 -3,-0.2 -2,-0.2 -2,-0.1 0.294 89.8-116.5 113.2 -6.3 118.8 -15.2 -8.9 66 78 A E < 0 0 164 -5,-0.7 -4,-0.3 -4,-0.4 -1,-0.1 0.784 360.0 360.0 44.3 31.2 115.4 -14.2 -7.5 67 79 A E 0 0 156 -6,-0.6 -6,-0.2 -3,-0.2 -5,-0.1 -0.270 360.0 360.0 -97.1 360.0 117.4 -12.1 -5.0