==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=12-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RIBOSOME 19-MAR-04 1SQR . COMPND 2 MOLECULE: 50S RIBOSOMAL PROTEIN L35AE; . SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; . AUTHOR D.A.SNYDER,J.M.ARAMINI,Y.J.HUANG,R.XIAO,J.R.CORT,R.SHASTRY, . 87 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6130.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 50 57.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 26 29.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 12 13.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 5.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 5 5.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 3 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 223 0, 0.0 2,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -49.8 11.9 -7.2 -8.7 2 2 A R - 0 0 173 85,-0.1 2,-0.3 83,-0.0 85,-0.1 -0.293 360.0-152.0 -85.9 174.7 10.5 -3.9 -7.5 3 3 A I - 0 0 61 83,-0.1 83,-1.1 -2,-0.1 2,-0.2 -0.947 6.0-160.5-145.3 163.5 6.9 -2.8 -7.6 4 4 A K E +A 85 0A 100 -2,-0.3 23,-0.5 81,-0.2 2,-0.3 -0.815 9.8 169.9-139.0 177.1 4.9 0.5 -7.8 5 5 A G E -AB 84 26A 0 79,-1.5 79,-0.8 21,-0.3 2,-0.4 -0.948 28.5-108.5-170.4-176.0 1.5 1.9 -7.1 6 6 A V E -AB 83 25A 50 19,-2.3 19,-1.1 -2,-0.3 77,-0.2 -0.987 27.6-122.1-140.4 127.5 -0.6 5.1 -6.8 7 7 A V E - B 0 24A 17 75,-0.7 17,-0.2 -2,-0.4 3,-0.1 -0.253 20.8-172.6 -63.2 151.7 -2.0 6.8 -3.8 8 8 A L E - 0 0 93 15,-1.8 2,-0.3 1,-0.2 16,-0.1 0.777 59.7 -30.7-109.9 -61.3 -5.7 7.4 -3.5 9 9 A S E - B 0 23A 79 14,-0.7 14,-1.9 2,-0.0 2,-0.6 -0.894 46.1-144.2-166.4 133.5 -6.4 9.5 -0.5 10 10 A Y E - B 0 22A 36 -2,-0.3 2,-0.7 12,-0.2 12,-0.2 -0.901 15.1-151.9-106.6 115.5 -4.9 10.1 2.9 11 11 A R E - B 0 21A 152 10,-1.8 10,-1.3 -2,-0.6 2,-0.8 -0.763 5.9-166.7 -89.3 116.8 -7.3 10.7 5.8 12 12 A R - 0 0 165 -2,-0.7 8,-0.1 8,-0.2 -1,-0.1 -0.508 16.7-152.9-100.2 62.5 -5.7 12.8 8.5 13 13 A S - 0 0 10 -2,-0.8 7,-0.1 6,-0.2 5,-0.1 -0.074 1.4-154.5 -38.8 117.6 -8.4 12.3 11.2 14 14 A K S S+ 0 0 193 5,-0.1 -1,-0.1 2,-0.0 6,-0.1 0.984 75.7 52.3 -62.3 -61.0 -8.2 15.3 13.4 15 15 A E S S- 0 0 106 1,-0.1 2,-0.2 4,-0.1 3,-0.1 0.322 89.8-117.2 -58.3-162.4 -9.6 13.7 16.6 16 16 A N S S+ 0 0 133 1,-0.1 -1,-0.1 2,-0.1 -2,-0.0 -0.716 71.7 101.4-151.8 95.4 -8.1 10.5 18.0 17 17 A Q S S+ 0 0 100 -2,-0.2 -1,-0.1 2,-0.1 -2,-0.0 0.160 101.2 13.0-158.5 16.7 -10.2 7.4 18.2 18 18 A H S S- 0 0 145 -3,-0.1 -2,-0.1 -5,-0.1 -5,-0.0 0.242 99.6-125.9-173.8 -5.2 -9.0 5.3 15.3 19 19 A N - 0 0 55 2,-0.0 2,-0.2 -7,-0.0 -6,-0.2 0.094 46.9 -45.4 68.3 173.7 -5.8 7.1 14.1 20 20 A N - 0 0 43 -8,-0.1 2,-0.3 51,-0.1 51,-0.2 -0.521 57.2-150.0 -78.2 142.8 -5.1 8.4 10.6 21 21 A V E -B 11 0A 28 -10,-1.3 -10,-1.8 -2,-0.2 2,-0.4 -0.812 8.7-164.8-113.7 154.8 -5.8 6.1 7.6 22 22 A M E -BC 10 69A 3 47,-2.0 47,-2.2 -2,-0.3 2,-0.4 -0.967 6.6-153.4-143.7 123.4 -4.2 5.9 4.2 23 23 A I E -BC 9 68A 52 -14,-1.9 -15,-1.8 -2,-0.4 -14,-0.7 -0.810 14.5-173.6 -99.0 134.8 -5.5 4.1 1.1 24 24 A I E -BC 7 67A 5 43,-2.0 43,-1.7 -2,-0.4 -17,-0.2 -0.900 12.5-159.2-125.6 153.9 -3.1 2.8 -1.6 25 25 A K E -B 6 0A 82 -19,-1.1 -19,-2.3 -2,-0.3 2,-0.2 -0.827 10.4-152.2-137.4 98.5 -3.7 1.3 -5.0 26 26 A P E -B 5 0A 9 0, 0.0 -21,-0.3 0, 0.0 59,-0.0 -0.477 35.1-103.1 -70.7 135.6 -1.0 -0.9 -6.6 27 27 A L S S- 0 0 102 -23,-0.5 -22,-0.1 -2,-0.2 39,-0.0 0.747 97.0 -14.4 -19.3 -85.3 -1.0 -0.9 -10.4 28 28 A D + 0 0 103 37,-0.0 3,-0.1 2,-0.0 -23,-0.0 0.830 68.4 144.6 -93.1 -91.9 -2.6 -4.3 -11.0 29 29 A V + 0 0 21 1,-0.2 2,-1.0 -4,-0.1 6,-0.1 0.927 26.9 166.3 48.2 46.4 -2.8 -6.7 -8.1 30 30 A N + 0 0 113 1,-0.1 2,-0.3 4,-0.1 -1,-0.2 -0.314 43.9 81.9 -89.6 51.2 -6.2 -7.7 -9.6 31 31 A S > - 0 0 24 -2,-1.0 4,-3.4 32,-0.2 3,-0.3 -0.795 66.4-149.6-159.2 111.4 -6.5 -10.8 -7.4 32 32 A R H > S+ 0 0 129 -2,-0.3 4,-2.8 1,-0.2 5,-0.4 0.822 104.9 61.0 -48.3 -29.9 -7.7 -11.0 -3.8 33 33 A E H > S+ 0 0 130 2,-0.2 4,-2.3 3,-0.2 -1,-0.2 0.978 112.3 32.5 -61.0 -58.2 -5.3 -13.9 -3.7 34 34 A E H > S+ 0 0 89 -3,-0.3 4,-1.5 2,-0.2 -2,-0.2 0.945 122.5 49.2 -65.0 -49.3 -2.2 -11.8 -4.5 35 35 A A H >X S+ 0 0 0 -4,-3.4 3,-1.3 2,-0.2 4,-0.8 0.975 116.4 41.1 -53.8 -61.0 -3.6 -8.8 -2.7 36 36 A S H >< S+ 0 0 41 -4,-2.8 3,-0.8 1,-0.3 -1,-0.2 0.874 115.2 53.1 -54.7 -39.6 -4.5 -10.7 0.4 37 37 A K H 3< S+ 0 0 153 -4,-2.3 -1,-0.3 -5,-0.4 -2,-0.2 0.701 103.4 57.8 -69.8 -20.0 -1.2 -12.6 0.1 38 38 A L H X< S+ 0 0 17 -4,-1.5 3,-2.3 -3,-1.3 -1,-0.2 0.641 77.7 117.5 -85.3 -14.1 0.6 -9.3 -0.1 39 39 A I T << S+ 0 0 59 -3,-0.8 19,-0.1 -4,-0.8 3,-0.1 -0.304 73.5 32.5 -55.5 128.0 -0.8 -8.2 3.3 40 40 A G T 3 S+ 0 0 35 1,-0.4 -1,-0.3 17,-0.3 -2,-0.1 0.188 89.1 129.1 107.9 -14.8 2.2 -7.7 5.7 41 41 A R < - 0 0 126 -3,-2.3 16,-1.6 1,-0.1 2,-0.5 -0.236 61.4-111.9 -69.8 162.3 4.6 -6.6 3.1 42 42 A L E -D 56 0A 85 14,-0.2 2,-0.8 -3,-0.1 14,-0.2 -0.865 18.0-146.3-103.1 128.2 6.6 -3.4 3.5 43 43 A V E -D 55 0A 8 12,-0.6 12,-1.4 -2,-0.5 2,-0.9 -0.806 14.1-172.8 -94.9 105.7 5.9 -0.3 1.4 44 44 A L E +D 54 0A 39 -2,-0.8 43,-1.0 41,-0.3 2,-0.4 -0.822 11.6 179.9-102.6 95.4 9.1 1.6 0.7 45 45 A W E -D 53 0A 10 8,-1.4 8,-1.6 -2,-0.9 39,-0.1 -0.800 18.9-135.4 -99.6 136.8 8.1 4.8 -1.0 46 46 A K + 0 0 122 -2,-0.4 6,-0.1 37,-0.3 39,-0.0 -0.307 27.7 168.1 -82.3 169.1 10.7 7.4 -2.1 47 47 A S - 0 0 15 -2,-0.1 3,-0.4 28,-0.0 4,-0.2 -0.917 37.0 -79.2-177.2 152.2 10.2 11.2 -1.7 48 48 A P S > S+ 0 0 90 0, 0.0 3,-2.0 0, 0.0 -1,-0.0 0.220 106.0 49.9 -48.0 178.1 12.2 14.5 -1.8 49 49 A S T 3 S- 0 0 114 1,-0.3 3,-0.1 3,-0.0 0, 0.0 0.616 123.7 -89.9 60.2 9.7 14.5 15.7 0.9 50 50 A G T 3 S+ 0 0 61 -3,-0.4 2,-1.3 1,-0.2 -1,-0.3 0.606 84.1 152.8 63.6 9.5 15.9 12.2 0.6 51 51 A K < - 0 0 105 -3,-2.0 2,-0.7 -4,-0.2 -1,-0.2 -0.588 29.6-163.0 -75.7 96.2 13.3 11.3 3.2 52 52 A I - 0 0 65 -2,-1.3 2,-0.3 -3,-0.1 -6,-0.2 -0.719 7.2-160.7 -84.3 114.4 12.7 7.6 2.5 53 53 A L E -D 45 0A 4 -8,-1.6 -8,-1.4 -2,-0.7 2,-0.3 -0.721 11.4-176.4 -98.5 147.0 9.5 6.6 4.1 54 54 A K E +D 44 0A 125 -2,-0.3 -10,-0.2 -10,-0.2 2,-0.1 -0.858 11.4 159.7-147.1 107.0 8.5 3.0 4.9 55 55 A G E -D 43 0A 6 -12,-1.4 -12,-0.6 -2,-0.3 2,-0.3 -0.031 31.4-113.1-104.0-151.4 5.2 2.0 6.4 56 56 A K E -DE 42 70A 103 14,-0.8 14,-0.7 -14,-0.2 2,-0.2 -0.979 18.0-112.5-155.5 141.0 3.3 -1.3 6.4 57 57 A I E - E 0 69A 3 -16,-1.6 -17,-0.3 -2,-0.3 12,-0.2 -0.507 28.4-178.6 -72.8 135.3 0.1 -2.8 5.0 58 58 A V E - 0 0 42 10,-1.4 2,-0.3 1,-0.4 -1,-0.2 0.875 58.4 -15.7 -99.0 -63.5 -2.5 -3.6 7.6 59 59 A R E - 0 0 135 9,-0.2 9,-3.4 -20,-0.1 -1,-0.4 -0.965 66.2-103.8-143.9 159.3 -5.5 -5.1 5.8 60 60 A V E - E 0 67A 26 -2,-0.3 7,-0.2 7,-0.3 2,-0.2 -0.649 28.1-179.3 -86.8 140.3 -7.0 -5.4 2.3 61 61 A H S S+ 0 0 122 5,-0.6 5,-0.2 -2,-0.3 6,-0.0 -0.671 73.6 37.4-140.7 80.1 -9.9 -3.2 1.3 62 62 A G S S- 0 0 40 -2,-0.2 2,-0.8 3,-0.1 4,-0.1 0.299 87.5-135.3 153.4 11.8 -11.0 -3.9 -2.3 63 63 A T S S+ 0 0 81 1,-0.3 2,-0.7 2,-0.1 -27,-0.2 -0.275 97.7 22.2 51.1 -94.9 -10.5 -7.7 -2.5 64 64 A K S S+ 0 0 134 -2,-0.8 -1,-0.3 -34,-0.2 2,-0.1 -0.330 132.8 35.0 -94.5 50.2 -8.8 -7.9 -5.8 65 65 A G S S+ 0 0 8 -2,-0.7 -34,-0.1 1,-0.5 -3,-0.1 -0.394 100.9 7.8-156.2-125.1 -7.5 -4.3 -5.8 66 66 A A - 0 0 8 -5,-0.2 -5,-0.6 -41,-0.1 -1,-0.5 0.028 56.2-151.9 -68.3 179.5 -6.3 -1.7 -3.3 67 67 A V E -CE 24 60A 2 -43,-1.7 -43,-2.0 -7,-0.2 -7,-0.3 -0.947 20.4 -94.7-150.7 166.7 -5.5 -2.2 0.3 68 68 A R E +C 23 0A 58 -9,-3.4 -10,-1.4 -2,-0.3 2,-0.3 -0.613 41.3 173.3 -88.9 148.4 -5.3 -0.3 3.6 69 69 A A E -CE 22 57A 0 -47,-2.2 -47,-2.0 -2,-0.2 2,-0.3 -0.943 15.1-155.6-147.6 166.1 -2.2 1.4 5.0 70 70 A R E - E 0 56A 80 -14,-0.7 -14,-0.8 -2,-0.3 2,-0.4 -0.996 1.8-159.0-148.0 147.0 -1.0 3.6 7.8 71 71 A F + 0 0 15 -2,-0.3 4,-0.1 -51,-0.2 -51,-0.1 -0.962 12.3 178.1-133.8 117.5 1.9 6.0 8.4 72 72 A E S S+ 0 0 172 -2,-0.4 -1,-0.1 1,-0.2 -17,-0.0 0.748 91.2 51.1 -84.7 -26.3 3.1 7.1 11.8 73 73 A K S S- 0 0 162 1,-0.1 -1,-0.2 -19,-0.1 -2,-0.0 0.582 103.5-148.6 -85.1 -11.0 5.9 9.2 10.3 74 74 A G - 0 0 19 2,-0.0 -2,-0.1 0, 0.0 -1,-0.1 0.210 17.7 -82.8 61.7 168.7 3.4 10.9 8.1 75 75 A L - 0 0 38 1,-0.2 3,-0.2 -4,-0.1 5,-0.0 -0.464 49.5 -85.0-100.0 175.0 4.2 12.2 4.6 76 76 A P S S- 0 0 45 0, 0.0 3,-0.2 0, 0.0 -1,-0.2 -0.171 72.0 -52.9 -73.6 171.1 5.8 15.5 3.5 77 77 A G S S- 0 0 81 1,-0.2 0, 0.0 2,-0.1 0, 0.0 -0.260 119.8 -20.7 -49.9 110.8 4.0 18.8 2.9 78 78 A Q S S+ 0 0 145 -3,-0.2 -1,-0.2 -2,-0.2 0, 0.0 0.933 76.3 160.3 47.7 95.1 1.2 17.8 0.5 79 79 A A > + 0 0 16 -3,-0.2 3,-1.5 3,-0.0 2,-1.4 0.068 18.8 136.7-130.2 22.3 2.3 14.5 -1.1 80 80 A L T 3 S+ 0 0 70 1,-0.2 0, 0.0 -70,-0.1 0, 0.0 -0.580 70.0 38.6 -76.0 92.6 -1.0 13.2 -2.4 81 81 A G T 3 S+ 0 0 49 -2,-1.4 -1,-0.2 1,-0.4 2,-0.2 0.198 77.1 124.1 153.3 -16.2 -0.0 12.0 -5.9 82 82 A D < - 0 0 71 -3,-1.5 -75,-0.7 1,-0.1 -1,-0.4 -0.489 66.8-110.3 -72.7 139.1 3.5 10.5 -5.6 83 83 A Y E -A 6 0A 132 -2,-0.2 -37,-0.3 -77,-0.2 -77,-0.2 -0.467 31.4-135.3 -69.4 137.3 3.7 6.9 -6.8 84 84 A V E -A 5 0A 7 -79,-0.8 -79,-1.5 -2,-0.2 2,-0.3 -0.554 22.4-169.4 -91.5 158.6 4.3 4.4 -4.0 85 85 A E E -A 4 0A 57 -81,-0.2 2,-0.7 -2,-0.2 -41,-0.3 -0.994 28.1-136.8-148.2 153.5 6.8 1.6 -4.2 86 86 A I 0 0 36 -83,-1.1 -43,-0.1 -2,-0.3 -41,-0.1 -0.667 360.0 360.0-109.4 73.5 7.8 -1.6 -2.4 87 87 A V 0 0 69 -43,-1.0 -2,-0.1 -2,-0.7 -85,-0.1 -0.781 360.0 360.0 -95.6 360.0 11.6 -1.2 -2.4