==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=12-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER CELL ADHESION 24-MAR-04 1SSU . COMPND 2 MOLECULE: VITRONECTIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR Y.KAMIKUBO,R.DE GUZMAN,G.KROON,S.CURRIDEN,J.G.NEELS, . 51 1 4 4 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4434.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 18 35.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 3.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 15.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 4 7.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A D 0 0 218 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 140.9 -0.0 1.2 -19.1 2 2 A Q - 0 0 172 2,-0.0 2,-0.2 0, 0.0 0, 0.0 -0.982 360.0-169.2-150.6 156.2 -0.5 -1.1 -16.0 3 3 A E - 0 0 102 -2,-0.3 2,-0.2 2,-0.0 0, 0.0 -0.823 4.5-155.5-138.6 177.1 1.4 -2.3 -12.9 4 4 A S - 0 0 37 -2,-0.2 -2,-0.0 2,-0.2 28,-0.0 -0.867 43.8 -83.0-144.9 177.4 1.2 -4.9 -10.0 5 5 A a S >> S+ 0 0 6 -2,-0.2 3,-3.0 3,-0.1 4,-1.3 0.566 80.3 125.2 -62.5 -9.3 2.5 -5.4 -6.4 6 6 A K T 34 S+ 0 0 178 1,-0.3 -2,-0.2 2,-0.2 33,-0.0 -0.384 88.7 6.7 -69.4 104.0 6.0 -6.8 -7.6 7 7 A G T 34 S+ 0 0 86 -2,-0.6 -1,-0.3 2,-0.0 -2,-0.1 0.420 128.5 65.0 103.1 6.2 8.5 -4.5 -5.8 8 8 A R T X4 + 0 0 46 -3,-3.0 3,-1.8 14,-0.0 4,-0.2 0.543 54.2 135.0-132.4 -21.4 5.8 -2.7 -3.7 9 9 A a T 3< S- 0 0 52 -4,-1.3 13,-0.2 1,-0.3 31,-0.1 -0.197 91.7 -10.7 -54.5 120.5 4.1 -5.0 -1.2 10 10 A T T 3 S+ 0 0 34 11,-1.5 -1,-0.3 29,-0.4 12,-0.2 0.850 83.5 154.1 52.1 42.9 3.8 -3.3 2.3 11 11 A E < - 0 0 72 -3,-1.8 11,-0.2 10,-1.2 -2,-0.1 0.702 58.2-103.7 -63.3 -21.5 6.1 -0.5 1.1 12 12 A G - 0 0 34 9,-0.3 9,-0.2 -4,-0.2 -1,-0.2 -0.048 45.7 -55.8 101.3 153.1 4.5 1.9 3.7 13 13 A F + 0 0 81 7,-0.1 2,-0.1 -3,-0.1 7,-0.1 -0.370 54.1 147.4 -69.8 133.3 2.0 4.8 3.5 14 14 A N > - 0 0 82 -2,-0.1 3,-2.6 3,-0.1 5,-0.1 -0.575 28.7-160.0-160.5 89.4 2.5 7.8 1.2 15 15 A V T 3 S+ 0 0 81 1,-0.3 5,-0.1 -2,-0.1 -2,-0.0 0.582 85.6 70.1 -57.7 -13.6 -0.9 9.1 -0.1 16 16 A D T 3 S+ 0 0 153 3,-0.1 -1,-0.3 2,-0.0 2,-0.1 0.772 83.2 94.0 -68.2 -27.4 0.7 11.0 -3.0 17 17 A K S < S- 0 0 90 -3,-2.6 -3,-0.1 1,-0.1 3,-0.0 -0.379 84.1-123.1 -72.3 148.3 1.6 7.6 -4.7 18 18 A K S S+ 0 0 190 1,-0.2 2,-0.4 -2,-0.1 -1,-0.1 0.706 100.4 39.1 -64.2 -23.1 -0.6 5.9 -7.4 19 19 A b - 0 0 9 -5,-0.1 2,-1.6 13,-0.1 12,-0.2 -0.984 64.0-155.0-130.5 125.6 -0.9 2.8 -5.2 20 20 A Q + 0 0 1 10,-2.1 2,-1.9 -2,-0.4 12,-0.4 -0.659 26.1 174.8 -86.0 69.8 -1.2 2.7 -1.4 21 21 A b + 0 0 1 -2,-1.6 -11,-1.5 -9,-0.2 -10,-1.2 -0.273 50.0 77.4 -75.8 48.2 0.4 -0.8 -1.5 22 22 A D S > S- 0 0 2 -2,-1.9 3,-1.2 -12,-0.2 10,-0.1 -0.831 97.5 -72.0-152.4-179.9 0.4 -0.8 2.4 23 23 A E T 3 S+ 0 0 139 1,-0.2 3,-0.2 -2,-0.2 -2,-0.0 0.573 117.5 48.2 -61.5 -19.7 -1.4 -1.2 5.7 24 24 A L T > S+ 0 0 87 1,-0.1 3,-0.8 2,-0.1 4,-0.4 0.372 76.0 102.7-109.6 1.3 -3.5 2.1 5.7 25 25 A c G X>>S+ 0 0 4 -3,-1.2 4,-1.4 -5,-0.2 3,-1.3 0.771 70.6 64.6 -63.2 -30.6 -5.0 2.1 2.1 26 26 A S G 345S+ 0 0 84 1,-0.3 -1,-0.2 2,-0.2 3,-0.1 0.861 97.7 57.0 -64.1 -33.8 -8.6 1.0 3.1 27 27 A Y G <45S+ 0 0 175 -3,-0.8 -1,-0.3 1,-0.2 -2,-0.2 0.637 118.8 33.0 -67.1 -15.2 -9.0 4.3 5.1 28 28 A Y T <45S- 0 0 96 -3,-1.3 -2,-0.2 -4,-0.4 -1,-0.2 0.499 94.9-134.2-120.2 -9.3 -8.2 6.1 1.7 29 29 A Q T <5S+ 0 0 171 -4,-1.4 -3,-0.2 -3,-0.1 -4,-0.1 0.839 75.9 112.5 52.1 39.8 -9.8 3.8 -1.0 30 30 A S < + 0 0 37 -5,-1.0 -10,-2.1 -10,-0.1 -4,-0.1 -0.028 42.8 131.2-129.1 21.5 -6.5 4.2 -3.0 31 31 A c - 0 0 38 -6,-0.3 -10,-0.2 -12,-0.2 0, 0.0 -0.206 66.2 -71.4 -76.4 167.0 -5.0 0.7 -2.8 32 32 A d > - 0 0 19 -12,-0.4 3,-1.7 1,-0.1 4,-0.2 -0.235 52.7-104.9 -53.0 148.8 -3.5 -1.7 -5.4 33 33 A T T 3 S+ 0 0 133 1,-0.3 -1,-0.1 2,-0.1 -2,-0.1 0.634 118.3 19.1 -58.0 -19.0 -6.1 -3.2 -7.8 34 34 A D T >> S+ 0 0 82 1,-0.1 3,-2.1 2,-0.0 4,-1.8 -0.158 78.5 151.5-143.4 38.6 -6.0 -6.7 -6.0 35 35 A Y H <>> + 0 0 47 -3,-1.7 4,-1.9 1,-0.3 5,-1.8 0.832 67.8 58.9 -38.8 -52.1 -4.4 -5.7 -2.6 36 36 A T H 345S+ 0 0 96 1,-0.2 -1,-0.3 3,-0.2 -2,-0.0 0.595 121.0 26.9 -67.4 -11.3 -6.1 -8.6 -0.6 37 37 A A H <45S+ 0 0 75 -3,-2.1 -1,-0.2 0, 0.0 -2,-0.2 0.501 135.7 27.4-120.6 -12.7 -4.4 -11.3 -2.8 38 38 A E H <5S+ 0 0 89 -4,-1.8 -3,-0.2 -3,-0.3 -2,-0.2 0.742 130.3 24.5-118.1 -36.5 -1.2 -9.4 -4.1 39 39 A d T <5S+ 0 0 1 -4,-1.9 -29,-0.4 -5,-0.3 -3,-0.2 0.437 78.9 138.5-118.2 -6.3 -0.1 -6.7 -1.5 40 40 A K < - 0 0 115 -5,-1.8 3,-0.1 1,-0.1 -4,-0.1 -0.204 58.3-108.5 -46.0 120.1 -1.6 -8.1 1.8 41 41 A P - 0 0 29 0, 0.0 -1,-0.1 0, 0.0 -31,-0.1 0.032 54.6 -60.4 -46.1 158.8 0.9 -7.8 4.8 42 42 A Q + 0 0 114 1,-0.1 9,-0.0 -32,-0.0 -32,-0.0 -0.068 41.5 179.4 -55.2 142.7 2.6 -10.8 6.3 43 43 A V - 0 0 124 -3,-0.1 -1,-0.1 0, 0.0 -3,-0.0 -0.467 22.8-164.5-138.0 50.6 0.6 -13.8 7.9 44 44 A T - 0 0 81 1,-0.1 5,-0.1 2,-0.1 -2,-0.0 -0.102 15.1-176.0 -51.0 141.1 3.5 -16.1 8.9 45 45 A R - 0 0 194 3,-0.1 -1,-0.1 0, 0.0 4,-0.1 0.616 58.9 -77.4-119.4 -21.3 2.7 -19.7 9.7 46 46 A G S S+ 0 0 54 2,-0.3 3,-0.1 0, 0.0 -2,-0.1 0.249 121.0 61.7 138.4 -7.7 6.0 -21.4 10.9 47 47 A D S S+ 0 0 101 1,-0.1 2,-0.3 0, 0.0 -3,-0.0 0.090 93.3 62.6-134.6 14.9 7.9 -22.1 7.6 48 48 A V + 0 0 69 1,-0.0 -2,-0.3 0, 0.0 -1,-0.1 -0.961 37.6 154.2-151.4 128.2 8.3 -18.5 6.2 49 49 A F + 0 0 159 -2,-0.3 2,-0.3 -5,-0.1 -1,-0.0 -0.113 47.1 103.8-146.3 30.8 10.3 -15.6 7.8 50 50 A T 0 0 115 1,-0.1 0, 0.0 0, 0.0 0, 0.0 -0.917 360.0 360.0-131.4 147.5 11.3 -13.5 4.7 51 51 A M 0 0 179 -2,-0.3 -1,-0.1 -9,-0.0 0, 0.0 0.412 360.0 360.0-145.7 360.0 10.2 -10.1 3.0