==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=5-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN/DNA 05-AUG-96 2STT . COMPND 2 MOLECULE: DNA (5'- . SOURCE 2 SYNTHETIC: YES; . AUTHOR G.M.CLORE,M.H.WERNER,A.M.GRONENBORN . 96 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7174.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 59 61.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 10 10.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 10 10.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 10.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 25 26.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 3.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 1 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 10 A V 0 0 130 0, 0.0 29,-0.1 0, 0.0 3,-0.0 0.000 360.0 360.0 360.0 6.0 -102.9 14.9 -28.6 2 11 A I > + 0 0 76 1,-0.1 4,-0.7 2,-0.1 5,-0.2 -0.687 360.0 169.4-125.7 78.9 -101.2 16.9 -25.9 3 12 A P H > + 0 0 21 0, 0.0 4,-0.8 0, 0.0 5,-0.5 0.417 65.3 85.1 -68.1 4.6 -103.6 17.3 -22.9 4 13 A A H >> S+ 0 0 16 2,-0.2 4,-1.4 1,-0.1 3,-1.0 0.926 104.1 11.6 -71.3 -91.8 -100.5 18.6 -21.1 5 14 A A H 34 S+ 0 0 53 1,-0.2 -1,-0.1 4,-0.2 -3,-0.0 0.572 126.8 66.0 -65.0 -4.9 -100.1 22.3 -21.8 6 15 A A H 3< S+ 0 0 77 -4,-0.7 -1,-0.2 3,-0.2 -2,-0.2 0.843 109.6 31.2 -86.7 -33.9 -103.6 22.2 -23.3 7 16 A L H << S+ 0 0 112 -3,-1.0 -2,-0.2 -4,-0.8 -3,-0.1 0.943 134.0 25.7 -87.0 -62.6 -105.5 21.4 -20.0 8 17 A A S < S- 0 0 63 -4,-1.4 -3,-0.2 -5,-0.5 -2,-0.1 0.507 102.3-126.2 -81.9 -2.2 -103.4 23.1 -17.3 9 18 A G - 0 0 52 -5,-0.5 2,-0.2 1,-0.1 -4,-0.2 0.977 27.1-140.4 54.7 76.0 -102.0 25.7 -19.7 10 19 A Y - 0 0 100 1,-0.0 2,-0.3 2,-0.0 -1,-0.1 -0.492 10.4-138.9 -71.0 134.9 -98.3 25.1 -19.0 11 20 A T - 0 0 77 3,-0.2 5,-0.1 -2,-0.2 -1,-0.0 -0.662 13.5-128.3 -93.8 150.7 -96.2 28.3 -18.9 12 21 A G S S+ 0 0 87 -2,-0.3 2,-0.4 3,-0.1 -1,-0.1 0.573 95.4 56.9 -74.2 -4.6 -92.7 28.5 -20.4 13 22 A S S S+ 0 0 85 1,-0.2 -2,-0.2 2,-0.0 0, 0.0 -0.955 92.2 38.6-126.6 146.3 -91.4 29.9 -17.1 14 23 A G S S- 0 0 54 -2,-0.4 -3,-0.2 2,-0.0 -1,-0.2 0.949 81.2-127.8 81.9 76.8 -91.7 28.4 -13.6 15 24 A P - 0 0 105 0, 0.0 3,-0.1 0, 0.0 -3,-0.1 -0.271 25.5-124.3 -57.3 137.6 -91.1 24.6 -14.0 16 25 A I - 0 0 47 1,-0.1 2,-0.2 -5,-0.1 -2,-0.0 -0.090 39.9 -71.4 -74.9 179.9 -93.9 22.6 -12.3 17 26 A Q > - 0 0 62 1,-0.1 4,-3.0 2,-0.1 5,-0.2 -0.523 41.5-126.5 -77.1 138.8 -93.4 19.9 -9.7 18 27 A L H > S+ 0 0 30 1,-0.2 4,-2.3 2,-0.2 5,-0.3 0.966 110.0 38.1 -51.4 -63.7 -91.8 16.6 -10.9 19 28 A W H > S+ 0 0 96 1,-0.2 4,-2.6 2,-0.2 5,-0.2 0.861 116.0 56.0 -62.4 -26.9 -94.5 14.2 -9.6 20 29 A Q H > S+ 0 0 75 2,-0.2 4,-3.0 1,-0.2 -1,-0.2 0.915 106.5 50.4 -69.0 -37.9 -97.1 16.8 -10.5 21 30 A F H X S+ 0 0 35 -4,-3.0 4,-2.7 -3,-0.2 5,-0.3 0.954 113.8 43.0 -64.1 -49.1 -95.8 16.8 -14.1 22 31 A L H X S+ 0 0 23 -4,-2.3 4,-3.0 1,-0.2 -2,-0.2 0.961 116.9 47.6 -63.4 -46.6 -96.0 13.0 -14.4 23 32 A L H X S+ 0 0 57 -4,-2.6 4,-1.5 -5,-0.3 -2,-0.2 0.917 110.1 53.7 -60.8 -40.2 -99.3 13.0 -12.6 24 33 A E H < S+ 0 0 56 -4,-3.0 3,-0.3 -5,-0.2 -2,-0.2 0.967 115.8 37.7 -61.4 -48.7 -100.5 15.8 -15.0 25 34 A L H >< S+ 0 0 18 -4,-2.7 3,-0.6 1,-0.2 -1,-0.2 0.840 103.8 74.6 -70.5 -30.1 -99.5 13.7 -18.0 26 35 A L H 3< S+ 0 0 2 -4,-3.0 2,-2.2 -5,-0.3 -1,-0.2 0.930 89.6 57.0 -49.9 -46.7 -100.7 10.5 -16.3 27 36 A T T 3< S+ 0 0 69 -4,-1.5 2,-0.5 -3,-0.3 -1,-0.3 -0.274 83.2 142.1 -81.9 56.9 -104.4 11.6 -16.9 28 37 A D < - 0 0 16 -2,-2.2 4,-0.3 -3,-0.6 3,-0.3 -0.842 48.1-152.4-102.5 132.1 -103.7 11.8 -20.6 29 38 A K S > S+ 0 0 178 -2,-0.5 3,-0.9 1,-0.2 4,-0.2 0.900 99.0 48.3 -68.5 -40.3 -106.3 10.6 -23.1 30 39 A S T >> S+ 0 0 22 1,-0.2 3,-2.0 2,-0.1 4,-1.1 0.620 82.9 94.7 -77.0 -10.8 -103.7 9.7 -25.8 31 40 A C H 3> S+ 0 0 5 -3,-0.3 4,-3.0 1,-0.3 3,-0.5 0.851 75.6 66.4 -51.8 -28.5 -101.7 7.8 -23.2 32 41 A Q H <4 S+ 0 0 165 -3,-0.9 -1,-0.3 -4,-0.3 -2,-0.1 0.881 102.2 45.3 -62.1 -34.5 -103.6 4.7 -24.5 33 42 A S H <4 S+ 0 0 86 -3,-2.0 -1,-0.2 -4,-0.2 -2,-0.2 0.684 127.4 29.1 -82.9 -15.5 -101.9 5.0 -27.9 34 43 A F H < S+ 0 0 75 -4,-1.1 14,-0.5 -3,-0.5 16,-0.3 0.467 134.6 1.8-119.1 -8.0 -98.4 5.6 -26.3 35 44 A I S < S- 0 0 6 -4,-3.0 2,-0.6 -5,-0.3 -1,-0.2 -0.929 80.9 -87.9-162.3-177.3 -98.8 3.7 -23.1 36 45 A S E +A 45 0A 57 9,-1.4 9,-1.6 -2,-0.3 2,-0.6 -0.901 35.2 172.7-113.3 115.2 -101.3 1.4 -21.1 37 46 A W E -A 44 0A 62 -2,-0.6 7,-0.1 7,-0.2 2,-0.1 -0.883 22.8-148.4-117.5 98.5 -103.8 3.1 -18.8 38 47 A T - 0 0 67 5,-0.8 2,-0.6 -2,-0.6 5,-0.3 -0.406 8.5-139.7 -68.3 142.5 -106.3 0.6 -17.4 39 48 A G S S+ 0 0 89 -2,-0.1 -1,-0.1 3,-0.1 3,-0.1 -0.283 77.0 83.2 -96.4 50.2 -109.8 2.0 -16.7 40 49 A D S S- 0 0 134 -2,-0.6 -3,-0.0 3,-0.2 -1,-0.0 0.330 101.4 -35.5-115.9-112.2 -110.3 0.0 -13.5 41 50 A G S S- 0 0 52 1,-0.0 2,-0.2 0, 0.0 -1,-0.0 0.764 100.3 -52.8 -83.8-102.8 -109.0 1.1 -10.0 42 51 A W S S+ 0 0 104 -3,-0.1 2,-0.4 2,-0.0 53,-0.3 -0.604 78.3 134.7-144.2 82.2 -105.6 2.9 -10.1 43 52 A E - 0 0 87 -5,-0.3 -5,-0.8 -2,-0.2 2,-0.5 -0.993 28.9-167.0-131.9 131.4 -102.8 0.9 -11.9 44 53 A F E -AB 37 93A 13 49,-1.1 49,-1.7 -2,-0.4 2,-0.4 -0.955 4.6-171.2-122.2 118.5 -100.4 2.5 -14.5 45 54 A K E -AB 36 92A 116 -9,-1.6 -9,-1.4 -2,-0.5 2,-1.0 -0.899 17.8-140.1-110.9 135.5 -98.2 0.2 -16.7 46 55 A L + 0 0 15 45,-2.1 -11,-0.1 -2,-0.4 -9,-0.0 -0.762 30.6 163.1 -94.4 100.3 -95.4 1.6 -18.9 47 56 A S S S- 0 0 53 -2,-1.0 -1,-0.2 1,-0.2 -12,-0.1 0.973 77.5 -10.3 -80.0 -63.0 -95.5 -0.3 -22.3 48 57 A D - 0 0 100 -14,-0.5 2,-3.0 0, 0.0 3,-0.5 -0.607 60.0-178.6-140.1 80.3 -93.4 2.0 -24.5 49 58 A P > + 0 0 20 0, 0.0 4,-1.8 0, 0.0 5,-0.3 -0.277 34.7 139.0 -73.9 57.6 -92.5 5.4 -22.9 50 59 A D H > S+ 0 0 89 -2,-3.0 4,-1.1 -16,-0.3 5,-0.1 0.920 79.2 29.1 -70.9 -41.2 -90.7 6.4 -26.1 51 60 A E H > S+ 0 0 94 -3,-0.5 4,-2.7 2,-0.2 5,-0.3 0.816 118.5 57.3 -88.3 -32.2 -92.1 10.0 -26.0 52 61 A V H > S+ 0 0 34 -4,-0.2 4,-2.4 2,-0.2 -2,-0.2 0.939 110.5 44.0 -64.6 -43.3 -92.5 10.1 -22.2 53 62 A A H X S+ 0 0 15 -4,-1.8 4,-2.4 2,-0.2 5,-0.3 0.944 114.0 49.2 -68.0 -44.8 -88.7 9.4 -21.7 54 63 A R H X S+ 0 0 114 -4,-1.1 4,-1.8 -5,-0.3 -2,-0.2 0.954 114.1 46.2 -60.2 -44.9 -87.6 11.8 -24.5 55 64 A R H X S+ 0 0 88 -4,-2.7 4,-1.8 2,-0.2 -1,-0.2 0.915 108.4 56.7 -63.8 -39.0 -89.8 14.5 -23.0 56 65 A W H < S+ 0 0 11 -4,-2.4 4,-0.4 -5,-0.3 -1,-0.2 0.929 115.6 36.9 -58.5 -41.8 -88.5 13.6 -19.5 57 66 A G H <>S+ 0 0 2 -4,-2.4 5,-1.3 1,-0.2 -1,-0.2 0.684 106.7 69.4 -83.8 -17.9 -84.9 14.3 -20.8 58 67 A K H ><5S+ 0 0 150 -4,-1.8 3,-2.3 -5,-0.3 -2,-0.2 0.946 95.7 52.1 -66.4 -44.8 -86.1 17.2 -23.0 59 68 A R T 3<5S+ 0 0 88 -4,-1.8 -1,-0.2 1,-0.3 -2,-0.2 0.781 107.8 54.9 -62.0 -22.0 -86.8 19.4 -20.0 60 69 A K T 3 5S- 0 0 68 -4,-0.4 -1,-0.3 -5,-0.2 -2,-0.2 0.373 116.0-118.7 -92.0 6.2 -83.2 18.5 -18.9 61 70 A N T < 5 + 0 0 148 -3,-2.3 -3,-0.2 1,-0.2 -2,-0.1 0.976 65.6 139.1 56.7 59.0 -81.9 19.8 -22.3 62 71 A K < - 0 0 104 -5,-1.3 -1,-0.2 -8,-0.2 3,-0.2 -0.981 56.6-133.2-132.1 145.9 -80.4 16.4 -23.4 63 72 A P S S- 0 0 137 0, 0.0 2,-0.4 0, 0.0 -1,-0.2 0.995 91.4 -3.7 -60.0 -65.1 -80.4 14.8 -26.9 64 73 A K - 0 0 141 -7,-0.1 2,-0.5 -6,-0.0 -10,-0.1 -0.996 68.8-158.3-132.5 132.2 -81.5 11.3 -25.7 65 74 A M - 0 0 33 -2,-0.4 -8,-0.1 -3,-0.2 -9,-0.1 -0.934 20.3-124.8-115.1 128.7 -82.0 10.2 -22.1 66 75 A N > - 0 0 77 -2,-0.5 3,-1.2 1,-0.1 4,-0.5 -0.387 14.6-131.3 -67.4 143.4 -81.9 6.5 -21.1 67 76 A Y T >> S+ 0 0 47 1,-0.3 4,-1.6 2,-0.2 3,-1.3 0.785 104.3 74.8 -66.6 -23.8 -85.0 5.3 -19.2 68 77 A E H 3> S+ 0 0 125 1,-0.3 4,-3.7 2,-0.2 5,-0.3 0.864 83.9 68.0 -59.0 -28.1 -82.6 3.8 -16.6 69 78 A K H <>>S+ 0 0 48 -3,-1.2 4,-3.6 1,-0.2 5,-0.5 0.914 98.5 50.0 -56.8 -39.9 -82.2 7.4 -15.5 70 79 A L H <>>S+ 0 0 9 -3,-1.3 4,-2.7 -4,-0.5 5,-1.0 0.966 111.8 46.1 -66.4 -47.3 -85.8 7.2 -14.3 71 80 A S H X5S+ 0 0 46 -4,-1.6 4,-1.0 3,-0.2 5,-0.4 0.954 119.1 42.7 -60.1 -44.1 -85.2 4.0 -12.4 72 81 A R H X5S+ 0 0 180 -4,-3.7 4,-0.7 -5,-0.2 -2,-0.2 0.919 130.0 26.4 -68.2 -43.0 -82.0 5.5 -11.0 73 82 A G H <5S+ 0 0 33 -4,-3.6 4,-0.3 -5,-0.3 -3,-0.2 0.907 123.7 48.1 -87.5 -48.0 -83.6 9.0 -10.3 74 83 A L H ><<