==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=12-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN/RNA 29-APR-04 1T4L . COMPND 2 MOLECULE: 5' TERMINAL HAIRPIN OF SNR47 PRECURSOR; . SOURCE 2 SYNTHETIC: YES; . AUTHOR H.WU,A.HENRAS,G.CHANFREAU,J.FEIGON . 90 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6323.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 62 68.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 15 16.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 6.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 10.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 30 33.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 3.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 364 B G 0 0 105 0, 0.0 3,-0.1 0, 0.0 5,-0.1 0.000 360.0 360.0 360.0 -91.2 -10.3 9.3 -17.7 2 365 B S + 0 0 112 1,-0.2 2,-0.5 2,-0.1 61,-0.1 0.881 360.0 138.5 42.5 47.5 -9.9 6.5 -15.2 3 366 B L > - 0 0 70 1,-0.2 4,-2.0 59,-0.1 -1,-0.2 -0.958 45.2-163.3-128.4 116.4 -6.9 5.3 -17.1 4 367 B D H > S+ 0 0 75 -2,-0.5 4,-1.2 1,-0.2 5,-0.5 0.980 92.0 59.7 -55.7 -61.9 -3.6 4.1 -15.5 5 368 B M H > S+ 0 0 89 1,-0.3 4,-1.8 2,-0.2 -1,-0.2 0.841 107.9 47.2 -32.5 -52.2 -1.6 4.4 -18.7 6 369 B N H > S+ 0 0 81 2,-0.2 4,-2.9 3,-0.2 -1,-0.3 0.944 115.2 46.6 -58.6 -49.8 -2.5 8.1 -18.7 7 370 B A H X S+ 0 0 0 -4,-2.0 4,-2.0 -3,-0.4 -2,-0.2 0.983 109.6 48.6 -54.9 -79.3 -1.6 8.5 -15.0 8 371 B K H X S+ 0 0 104 -4,-1.2 4,-1.9 1,-0.3 -1,-0.2 0.794 115.3 50.6 -29.3 -45.1 1.8 6.6 -14.9 9 372 B R H X>S+ 0 0 108 -4,-1.8 4,-1.4 -5,-0.5 5,-0.9 0.989 103.0 54.4 -61.6 -61.6 2.6 8.8 -17.9 10 373 B Q H X>S+ 0 0 32 -4,-2.9 4,-1.0 3,-0.2 5,-0.8 0.821 112.7 51.6 -40.9 -34.6 1.6 12.1 -16.4 11 374 B L H X>S+ 0 0 15 -4,-2.0 5,-3.5 3,-0.2 4,-1.6 0.993 125.7 15.7 -68.3 -80.9 4.0 11.0 -13.6 12 375 B Y H <5S+ 0 0 166 -4,-1.9 -1,-0.2 3,-0.2 -2,-0.2 0.046 136.1 45.7 -85.9 27.8 7.3 10.0 -15.3 13 376 B S H <5S+ 0 0 60 -4,-1.4 -3,-0.2 -5,-0.1 -1,-0.2 0.520 122.8 25.5-135.9 -31.6 6.3 11.8 -18.5 14 377 B L H < - 0 0 39 1,-0.1 3,-0.9 -3,-0.0 2,-0.4 -0.589 43.3 -63.2-115.0 177.7 12.3 14.3 -13.7 18 381 B A T 3 S+ 0 0 93 1,-0.3 -1,-0.1 -2,-0.2 -2,-0.0 -0.480 122.8 9.4 -66.0 118.1 15.9 13.3 -13.0 19 382 B S T 3 S+ 0 0 100 -2,-0.4 -1,-0.3 3,-0.1 -3,-0.0 0.904 87.1 129.4 79.1 45.3 16.4 13.4 -9.2 20 383 B L < - 0 0 9 -3,-0.9 25,-0.3 2,-0.1 24,-0.1 0.831 51.6-151.2 -95.4 -42.2 12.7 13.9 -8.2 21 384 B R + 0 0 176 -4,-0.3 23,-0.4 1,-0.2 21,-0.1 0.348 28.6 173.3 84.6 -6.2 12.4 11.1 -5.6 22 385 B L + 0 0 10 21,-0.2 2,-0.3 -5,-0.2 21,-0.3 -0.006 9.8 160.9 -36.0 129.5 8.7 10.9 -6.5 23 386 B H E -A 42 0A 60 19,-2.8 19,-1.8 -3,-0.1 2,-0.4 -0.980 35.7-136.4-161.2 147.4 7.3 7.9 -4.6 24 387 B Y E -A 41 0A 68 -2,-0.3 2,-0.5 17,-0.2 17,-0.2 -0.829 16.7-153.4-105.1 141.9 4.1 6.3 -3.4 25 388 B V E -A 40 0A 48 15,-2.2 15,-1.9 -2,-0.4 2,-0.3 -0.964 11.7-135.8-121.7 123.3 3.7 4.8 0.0 26 389 B T E +A 39 0A 95 -2,-0.5 2,-0.3 13,-0.2 13,-0.2 -0.573 30.8 174.4 -76.2 130.4 1.2 2.0 0.8 27 390 B V E +A 38 0A 51 11,-2.0 11,-1.9 -2,-0.3 -2,-0.0 -0.996 45.0 50.1-141.4 144.9 -0.7 2.6 4.0 28 391 B K S S- 0 0 147 -2,-0.3 -1,-0.2 9,-0.2 3,-0.1 0.876 80.9-123.3 95.7 56.2 -3.6 0.8 5.8 29 392 B K - 0 0 169 -3,-0.1 -1,-0.1 8,-0.1 7,-0.0 0.033 37.7-112.0 -31.2 107.4 -2.5 -2.8 5.8 30 393 B P - 0 0 73 0, 0.0 2,-0.3 0, 0.0 6,-0.1 0.100 32.0-141.4 -45.0 159.5 -5.4 -4.5 4.0 31 394 B T > - 0 0 63 3,-0.5 3,-1.0 5,-0.1 5,-0.1 -0.894 20.7-126.7-128.1 158.3 -7.7 -6.9 5.9 32 395 B A T 3 S+ 0 0 107 -2,-0.3 -1,-0.0 1,-0.2 0, 0.0 0.260 116.7 45.5 -86.3 13.8 -9.5 -10.2 5.1 33 396 B V T 3 S+ 0 0 125 3,-0.1 -1,-0.2 0, 0.0 0, 0.0 0.101 137.1 7.5-137.0 14.0 -12.7 -8.5 6.3 34 397 B D < - 0 0 101 -3,-1.0 -3,-0.5 21,-0.1 -2,-0.2 0.049 65.0-177.0 166.4 61.6 -12.1 -5.2 4.3 35 398 B P + 0 0 66 0, 0.0 -3,-0.1 0, 0.0 19,-0.1 0.759 42.9 130.3 -42.8 -32.2 -9.1 -5.6 2.0 36 399 B N + 0 0 50 -6,-0.1 2,-0.3 20,-0.1 19,-0.3 0.088 34.8 174.7 -30.7 127.2 -9.7 -1.9 1.0 37 400 B S E - B 0 54A 3 17,-1.6 17,-2.0 -7,-0.1 2,-0.3 -0.881 20.8-131.2-136.6 166.9 -6.4 -0.0 1.4 38 401 B I E -AB 27 53A 51 -11,-1.9 -11,-2.0 -2,-0.3 2,-0.4 -0.827 9.4-146.2-122.5 162.0 -5.1 3.5 0.6 39 402 B V E -AB 26 52A 15 13,-2.2 13,-1.6 -2,-0.3 2,-0.5 -0.970 6.1-145.1-128.7 143.8 -2.1 5.0 -1.2 40 403 B E E -AB 25 51A 51 -15,-1.9 -15,-2.2 -2,-0.4 2,-0.7 -0.927 8.2-158.7-110.7 125.8 -0.1 8.1 -0.6 41 404 B C E +AB 24 50A 0 9,-2.0 8,-1.8 -2,-0.5 9,-1.6 -0.887 39.4 121.8-106.2 107.2 1.3 10.0 -3.5 42 405 B R E -AB 23 48A 66 -19,-1.8 -19,-2.8 -2,-0.7 2,-0.3 -0.797 49.9-111.5-147.6-171.3 4.2 12.2 -2.5 43 406 B V E >> - B 0 47A 1 4,-1.1 3,-4.3 -21,-0.3 4,-1.4 -0.978 37.3-101.8-135.9 147.5 7.9 13.0 -3.0 44 407 B G T 34 S+ 0 0 46 -23,-0.4 -23,-0.1 -2,-0.3 -22,-0.1 0.708 118.3 71.3 -35.3 -28.8 11.0 12.7 -1.0 45 408 B D T 34 S- 0 0 96 -25,-0.3 -1,-0.3 2,-0.1 3,-0.1 0.517 122.8-105.4 -70.3 -3.2 10.7 16.4 -0.3 46 409 B G T <4 S+ 0 0 54 -3,-4.3 2,-0.5 1,-0.2 -2,-0.2 0.825 75.8 140.2 82.3 33.1 7.7 15.4 1.9 47 410 B T E < -B 43 0A 57 -4,-1.4 -4,-1.1 0, 0.0 2,-0.7 -0.945 40.7-153.4-116.2 118.4 5.1 16.6 -0.6 48 411 B V E -B 42 0A 59 -2,-0.5 -6,-0.3 -6,-0.3 3,-0.1 -0.793 7.5-171.2 -92.3 111.9 1.9 14.6 -1.2 49 412 B L E - 0 0 11 -8,-1.8 2,-0.3 -2,-0.7 -7,-0.2 0.869 64.7 -59.0 -67.4 -36.2 0.5 15.2 -4.6 50 413 B G E -B 41 0A 9 -9,-1.6 -9,-2.0 -3,-0.1 2,-0.3 -0.878 51.7-113.0-175.3-152.6 -2.6 13.3 -3.6 51 414 B T E -B 40 0A 56 -2,-0.3 2,-0.3 -11,-0.2 -11,-0.2 -0.954 12.5-158.2-159.9 174.2 -4.0 9.9 -2.4 52 415 B G E -B 39 0A 4 -13,-1.6 -13,-2.2 -2,-0.3 2,-0.3 -0.838 4.6-174.3-169.0 128.5 -6.2 7.0 -3.4 53 416 B V E +B 38 0A 68 -15,-0.3 2,-0.3 -2,-0.3 -15,-0.2 -0.879 12.9 159.2-123.5 155.6 -8.2 4.3 -1.7 54 417 B G E -B 37 0A 13 -17,-2.0 -17,-1.6 -2,-0.3 3,-0.5 -0.978 46.5-113.7-164.4 169.2 -10.1 1.2 -2.9 55 418 B R S S+ 0 0 193 -2,-0.3 -1,-0.1 -19,-0.3 -21,-0.1 0.882 119.8 36.1 -80.0 -40.0 -11.5 -2.2 -2.0 56 419 B N S S- 0 0 77 1,-0.1 2,-5.3 -20,-0.1 -1,-0.2 -0.060 104.8-131.2-102.0 31.8 -9.1 -4.2 -4.2 57 420 B I S >> S+ 0 0 57 -3,-0.5 3,-1.9 1,-0.2 4,-1.6 -0.045 94.1 86.2 48.8 -46.1 -6.3 -1.7 -3.4 58 421 B K H >>>S+ 0 0 129 -2,-5.3 4,-1.9 1,-0.3 3,-0.6 0.938 83.2 57.4 -44.4 -55.2 -5.4 -1.5 -7.1 59 422 B I H 3>5S+ 0 0 55 1,-0.3 4,-2.2 2,-0.2 -1,-0.3 0.852 106.5 53.2 -42.8 -34.3 -8.0 1.2 -7.5 60 423 B A H <>5S+ 0 0 1 -3,-1.9 4,-2.5 2,-0.2 -1,-0.3 0.917 108.6 47.4 -68.6 -44.8 -5.9 2.8 -4.8 61 424 B G H X S+ 0 0 9 -4,-1.9 4,-1.7 1,-0.2 3,-1.4 0.972 110.3 49.4 -55.1 -59.7 -1.3 8.2 -9.8 66 429 B E H 3< S+ 0 0 54 -4,-2.5 -1,-0.2 1,-0.3 -2,-0.2 0.816 108.0 58.9 -50.1 -29.9 -4.4 10.0 -11.2 67 430 B N H >< S+ 0 0 33 -4,-1.7 3,-1.0 -5,-0.3 -1,-0.3 0.875 100.2 54.2 -67.8 -38.1 -4.2 12.0 -8.0 68 431 B A H X< S+ 0 0 3 -4,-1.5 3,-0.6 -3,-1.4 -2,-0.2 0.908 114.3 40.3 -62.7 -41.8 -0.7 13.1 -8.7 69 432 B L T 3< S+ 0 0 36 -4,-1.7 -1,-0.3 1,-0.2 -2,-0.2 0.345 96.4 85.6 -87.3 5.9 -1.8 14.5 -12.1 70 433 B R T < S+ 0 0 159 -3,-1.0 2,-0.4 -5,-0.3 -1,-0.2 0.257 75.0 76.4 -89.4 11.8 -5.0 15.7 -10.4 71 434 B D <> + 0 0 31 -3,-0.6 4,-4.2 1,-0.2 5,-0.2 -0.710 52.6 176.2-125.8 81.4 -3.2 18.9 -9.4 72 435 B K H > S+ 0 0 162 -2,-0.4 4,-3.1 1,-0.2 5,-0.3 0.909 88.6 46.5 -46.9 -49.3 -2.8 21.3 -12.4 73 436 B K H > S+ 0 0 170 2,-0.2 4,-2.0 1,-0.2 -1,-0.2 0.924 115.2 45.6 -61.2 -46.1 -1.3 23.9 -10.1 74 437 B M H > S+ 0 0 25 2,-0.2 4,-1.7 3,-0.2 -2,-0.2 0.933 115.4 47.8 -63.2 -45.9 1.1 21.3 -8.6 75 438 B L H >X S+ 0 0 22 -4,-4.2 4,-1.7 1,-0.2 3,-1.1 0.985 115.5 42.2 -57.4 -62.4 1.9 19.9 -11.9 76 439 B D H 3X S+ 0 0 109 -4,-3.1 4,-1.9 1,-0.3 -1,-0.2 0.827 108.0 65.1 -54.0 -32.3 2.6 23.2 -13.6 77 440 B F H 3X S+ 0 0 71 -4,-2.0 4,-1.9 -5,-0.3 -1,-0.3 0.906 104.4 43.1 -57.9 -43.3 4.4 24.1 -10.3 78 441 B Y H