==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=13-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION/DNA 01-JUL-97 1TF3 . COMPND 2 MOLECULE: 5S RNA GENE; . SOURCE 2 SYNTHETIC: YES; . AUTHOR M.P.FOSTER,D.S.WUTTKE,I.RADHAKRISHNAN,D.A.CASE, . 92 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7162.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 63 68.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 9 9.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 17 18.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 7.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 26 28.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 192 0, 0.0 2,-1.6 0, 0.0 15,-0.0 0.000 360.0 360.0 360.0 -35.8 3.7 -20.4 -13.8 2 11 A K - 0 0 154 14,-0.1 2,-0.2 13,-0.0 13,-0.1 -0.523 360.0-155.6 -71.2 86.8 0.3 -21.8 -12.6 3 12 A R - 0 0 154 -2,-1.6 2,-0.4 11,-0.1 13,-0.3 -0.491 17.9-124.9 -63.0 128.7 -1.9 -18.8 -13.3 4 13 A Y E -A 15 0A 102 11,-1.9 11,-2.6 -2,-0.2 2,-0.3 -0.655 30.1-134.1 -77.5 126.9 -4.9 -19.1 -11.0 5 14 A I E -A 14 0A 113 -2,-0.4 9,-0.3 9,-0.3 2,-0.2 -0.633 19.0-100.3 -90.7 143.6 -8.0 -18.9 -13.2 6 15 A C - 0 0 4 7,-3.1 6,-0.3 -2,-0.3 5,-0.1 -0.423 28.3-128.8 -61.6 124.6 -11.2 -16.8 -12.6 7 16 A S S S+ 0 0 90 1,-0.2 2,-2.5 -2,-0.2 -1,-0.1 0.794 101.7 75.3 -42.8 -43.1 -14.0 -18.9 -11.1 8 17 A F S > S- 0 0 94 1,-0.2 3,-3.1 2,-0.1 4,-0.3 -0.422 79.6-163.6 -75.7 63.2 -16.4 -17.6 -13.8 9 18 A A G > S+ 0 0 69 -2,-2.5 3,-2.6 1,-0.3 -1,-0.2 0.590 78.8 60.5 -13.9 -65.3 -14.7 -19.8 -16.4 10 19 A D G 3 S+ 0 0 171 1,-0.3 -1,-0.3 -3,-0.1 -2,-0.1 0.762 92.1 69.8 -43.2 -37.3 -16.1 -18.1 -19.6 11 20 A C G < S- 0 0 61 -3,-3.1 -1,-0.3 1,-0.1 -2,-0.2 0.804 86.0-157.2 -53.4 -35.9 -14.3 -14.9 -18.4 12 21 A G < + 0 0 58 -3,-2.6 2,-0.2 -4,-0.3 -1,-0.1 0.609 37.2 146.5 63.8 16.2 -10.9 -16.6 -19.2 13 22 A A + 0 0 15 -5,-0.2 -7,-3.1 -4,-0.1 2,-0.3 -0.608 20.1 172.8 -82.3 142.7 -9.0 -14.2 -16.8 14 23 A A E +A 5 0A 36 -9,-0.3 2,-0.3 -2,-0.2 -9,-0.3 -0.980 12.3 169.4-154.1 139.1 -6.0 -15.8 -15.0 15 24 A Y E -A 4 0A 71 -11,-2.6 -11,-1.9 -2,-0.3 6,-0.1 -0.977 28.7-146.0-151.1 135.9 -3.2 -14.5 -12.7 16 25 A N S S+ 0 0 62 -13,-0.3 2,-0.5 -2,-0.3 -1,-0.1 0.824 83.6 83.8 -72.3 -31.9 -0.6 -16.5 -10.6 17 26 A K S > S- 0 0 130 1,-0.2 4,-2.2 -13,-0.1 3,-0.2 -0.632 72.9-150.0 -76.7 119.0 -0.7 -13.8 -7.9 18 27 A N H > S+ 0 0 83 -2,-0.5 4,-2.8 1,-0.2 5,-0.2 0.916 96.9 55.7 -53.8 -48.3 -3.6 -14.4 -5.5 19 28 A W H > S+ 0 0 99 1,-0.2 4,-2.8 2,-0.2 -1,-0.2 0.886 107.1 50.4 -52.4 -44.6 -4.0 -10.7 -4.8 20 29 A K H > S+ 0 0 55 1,-0.2 4,-2.6 2,-0.2 -1,-0.2 0.948 111.3 47.4 -59.8 -50.6 -4.4 -10.0 -8.5 21 30 A L H X S+ 0 0 13 -4,-2.2 4,-3.3 2,-0.2 -2,-0.2 0.885 110.8 52.6 -61.5 -35.9 -7.0 -12.7 -8.8 22 31 A Q H X S+ 0 0 37 -4,-2.8 4,-2.7 2,-0.2 -2,-0.2 0.962 109.6 48.5 -62.4 -49.5 -8.8 -11.2 -5.7 23 32 A A H X S+ 0 0 16 -4,-2.8 4,-0.6 23,-0.3 -2,-0.2 0.887 114.8 46.7 -57.2 -39.2 -8.8 -7.8 -7.3 24 33 A H H >< S+ 0 0 19 -4,-2.6 3,-2.0 -5,-0.2 4,-0.5 0.993 112.8 47.3 -63.6 -60.3 -10.2 -9.3 -10.5 25 34 A L H >X S+ 0 0 20 -4,-3.3 4,-3.2 1,-0.3 3,-1.4 0.787 97.4 72.6 -51.6 -34.8 -12.8 -11.4 -8.7 26 35 A S H 3X S+ 0 0 25 -4,-2.7 4,-2.2 1,-0.3 -1,-0.3 0.838 89.3 61.8 -52.7 -32.9 -13.9 -8.3 -6.7 27 36 A K H << S+ 0 0 156 -3,-2.0 -1,-0.3 -4,-0.6 -2,-0.2 0.840 117.8 27.2 -61.4 -35.5 -15.5 -7.0 -9.9 28 37 A H H <4 S+ 0 0 89 -3,-1.4 -2,-0.2 -4,-0.5 -1,-0.2 0.866 133.1 33.2 -90.1 -50.1 -17.8 -10.0 -10.0 29 38 A T H < S- 0 0 54 -4,-3.2 -3,-0.2 2,-0.1 -2,-0.2 0.714 88.4-135.4 -82.1 -30.8 -18.1 -10.9 -6.3 30 39 A G < + 0 0 57 -4,-2.2 2,-0.2 -5,-0.5 -4,-0.2 0.538 54.9 148.1 77.5 8.0 -17.9 -7.5 -4.7 31 40 A E - 0 0 123 -6,-0.2 -1,-0.3 -9,-0.1 -2,-0.1 -0.519 33.2-170.6 -78.4 144.4 -15.5 -9.1 -2.1 32 41 A K - 0 0 123 -2,-0.2 13,-0.2 -3,-0.1 14,-0.2 -0.727 3.0-172.8-134.1 77.4 -12.6 -7.0 -0.6 33 42 A P S S+ 0 0 57 0, 0.0 13,-0.2 0, 0.0 -1,-0.1 0.595 71.5 60.6 -47.9 -26.1 -10.4 -9.5 1.3 34 43 A F E S-B 45 0B 60 11,-3.0 11,-2.5 14,-0.0 13,-0.2 -0.702 70.8-178.1-112.4 78.8 -8.0 -6.9 2.9 35 44 A P E -B 44 0B 50 0, 0.0 9,-0.3 0, 0.0 7,-0.1 -0.441 30.3-138.9 -75.8 150.8 -10.2 -4.6 5.2 36 45 A C - 0 0 16 7,-2.7 2,-2.2 1,-0.1 6,-0.1 0.685 25.3-160.9 -78.2 -21.4 -8.6 -1.7 7.1 37 46 A K + 0 0 158 6,-0.5 5,-0.2 1,-0.2 -1,-0.1 -0.201 42.4 131.8 70.3 -47.0 -10.8 -2.6 10.2 38 47 A E - 0 0 83 -2,-2.2 -1,-0.2 3,-0.3 -2,-0.1 0.001 69.9 -98.0 -40.0 133.8 -10.3 0.9 11.7 39 48 A E S S+ 0 0 175 1,-0.2 2,-2.4 2,-0.1 -1,-0.1 -0.244 105.9 1.1 -55.6 138.2 -13.5 2.6 12.9 40 49 A G S S+ 0 0 84 1,-0.2 2,-1.8 -3,-0.1 -1,-0.2 -0.444 127.5 67.5 76.9 -65.9 -14.8 5.1 10.3 41 50 A C + 0 0 24 -2,-2.4 2,-2.2 1,-0.1 -3,-0.3 -0.212 61.7 150.3 -78.9 50.4 -11.9 4.2 7.9 42 51 A E + 0 0 149 -2,-1.8 -1,-0.1 -5,-0.2 -3,-0.1 -0.370 25.3 171.4 -82.1 59.8 -13.4 0.7 7.5 43 52 A K - 0 0 104 -2,-2.2 -7,-2.7 -5,-0.1 -6,-0.5 -0.295 29.0-140.6 -69.4 158.4 -11.9 0.6 3.9 44 53 A G E -B 35 0B 25 -9,-0.3 2,-0.3 -8,-0.1 -2,-0.1 -0.904 17.0-169.9-125.9 98.7 -11.9 -2.7 1.9 45 54 A F E -B 34 0B 38 -11,-2.5 -11,-3.0 -2,-0.5 3,-0.1 -0.674 16.8-151.8 -88.7 143.5 -8.7 -3.3 -0.1 46 55 A T S S+ 0 0 29 -2,-0.3 2,-0.3 -13,-0.2 -23,-0.3 0.443 79.5 32.6 -90.4 -2.4 -8.7 -6.2 -2.6 47 56 A S S > S- 0 0 6 -13,-0.2 4,-0.7 -25,-0.1 -1,-0.1 -0.993 82.8-107.8-154.9 150.3 -5.0 -6.7 -2.3 48 57 A L T 4 S+ 0 0 84 -2,-0.3 2,-1.8 1,-0.2 -2,-0.1 -0.255 98.8 30.3 -74.1 164.3 -2.2 -6.5 0.3 49 58 A H T > S+ 0 0 122 1,-0.2 4,-3.1 -2,-0.0 5,-0.3 -0.216 105.4 74.2 74.5 -40.4 0.5 -3.8 0.2 50 59 A H H > S+ 0 0 66 -2,-1.8 4,-2.3 1,-0.2 -1,-0.2 0.915 99.1 49.7 -59.4 -36.3 -2.0 -1.4 -1.4 51 60 A L H X S+ 0 0 31 -4,-0.7 4,-2.5 2,-0.2 -1,-0.2 0.900 108.7 52.2 -62.8 -43.7 -3.3 -1.5 2.2 52 61 A T H > S+ 0 0 57 2,-0.2 4,-0.7 1,-0.2 -2,-0.2 0.943 109.0 47.1 -63.4 -48.0 0.3 -0.8 3.4 53 62 A R H >< S+ 0 0 119 -4,-3.1 3,-1.5 1,-0.2 4,-0.5 0.937 111.3 53.0 -61.7 -40.1 0.7 2.3 1.1 54 63 A H H >X S+ 0 0 23 -4,-2.3 3,-2.5 1,-0.3 4,-0.6 0.936 99.1 64.1 -55.8 -43.6 -2.7 3.4 2.4 55 64 A S H 3X S+ 0 0 43 -4,-2.5 4,-2.8 1,-0.3 3,-0.4 0.731 84.5 74.7 -54.6 -20.9 -1.3 3.0 5.9 56 65 A L H S+ 0 0 42 -3,-1.5 4,-1.8 -4,-0.7 5,-1.7 0.869 92.7 55.2 -57.4 -34.5 1.2 5.8 5.1 57 66 A T H <45S+ 0 0 81 -3,-2.5 -1,-0.2 -4,-0.5 -2,-0.2 0.841 110.5 43.2 -68.4 -33.9 -1.8 8.1 5.5 58 67 A H H <5S+ 0 0 78 -4,-0.6 -2,-0.2 -3,-0.4 -1,-0.2 0.928 119.9 41.2 -76.6 -47.5 -2.5 6.8 9.0 59 68 A T H <5S- 0 0 94 -4,-2.8 -2,-0.2 2,-0.1 -1,-0.2 0.742 106.4-129.7 -69.1 -25.5 1.2 6.8 10.1 60 69 A G T <5 + 0 0 56 -4,-1.8 2,-2.3 -5,-0.3 -3,-0.2 0.735 47.2 163.0 77.8 27.2 1.6 10.2 8.3 61 70 A E < + 0 0 96 -5,-1.7 2,-0.5 -6,-0.2 -1,-0.1 -0.321 4.2 167.0 -79.8 62.2 4.7 8.8 6.4 62 71 A K + 0 0 118 -2,-2.3 14,-0.2 1,-0.2 12,-0.1 -0.662 18.7 133.9 -75.9 117.2 4.8 11.4 3.7 63 72 A N + 0 0 66 12,-1.7 2,-1.8 -2,-0.5 13,-0.2 0.523 16.3 114.2-146.0 -18.4 8.2 10.8 2.2 64 73 A F E -C 75 0C 49 11,-2.5 11,-2.2 1,-0.1 2,-0.5 -0.503 54.2-161.6 -75.5 88.9 8.3 10.8 -1.7 65 74 A T E -C 74 0C 53 -2,-1.8 2,-0.3 9,-0.3 9,-0.3 -0.631 19.2-122.6 -77.9 118.9 10.4 13.9 -2.0 66 75 A C - 0 0 0 7,-3.0 2,-2.4 -2,-0.5 -1,-0.1 -0.464 24.2-129.6 -59.9 117.2 10.4 15.6 -5.5 67 76 A D S S+ 0 0 140 -2,-0.3 2,-0.3 5,-0.1 -1,-0.1 -0.482 71.7 113.4 -74.6 75.0 14.1 15.6 -6.5 68 77 A S S S- 0 0 35 -2,-2.4 5,-0.1 3,-0.1 -2,-0.1 -0.906 74.2-112.2-149.9 113.3 14.0 19.4 -7.3 69 78 A D S S+ 0 0 151 -2,-0.3 2,-2.1 1,-0.2 -2,-0.0 -0.195 101.6 0.1 -50.5 131.8 16.0 21.9 -5.3 70 79 A G S S+ 0 0 78 1,-0.2 2,-1.5 2,-0.1 -1,-0.2 -0.376 123.9 75.2 81.5 -56.2 13.7 24.2 -3.3 71 80 A C + 0 0 36 -2,-2.1 2,-1.8 1,-0.2 -1,-0.2 -0.147 58.3 143.9 -77.7 44.3 10.7 22.3 -4.9 72 81 A D + 0 0 81 -2,-1.5 2,-0.2 -5,-0.1 -1,-0.2 -0.283 25.0 170.8 -83.5 52.8 11.5 19.4 -2.4 73 82 A L - 0 0 89 -2,-1.8 -7,-3.0 -5,-0.1 2,-0.5 -0.498 27.3-138.2 -69.8 131.7 7.8 18.7 -2.0 74 83 A R E -C 65 0C 123 -9,-0.3 -9,-0.3 -2,-0.2 2,-0.2 -0.844 21.7-164.9 -97.1 123.6 7.1 15.5 -0.1 75 84 A F E -C 64 0C 40 -11,-2.2 -11,-2.5 -2,-0.5 -12,-1.7 -0.682 28.0-124.6-109.6 161.1 4.3 13.2 -1.4 76 85 A T S S+ 0 0 42 -2,-0.2 2,-0.3 -14,-0.2 -1,-0.1 0.817 92.8 20.0 -72.0 -36.3 2.4 10.3 0.0 77 86 A T S > S- 0 0 28 -13,-0.1 4,-2.5 1,-0.1 5,-0.2 -0.945 75.5-116.6-135.7 158.1 3.2 7.9 -2.9 78 87 A K H > S+ 0 0 132 -2,-0.3 4,-2.9 1,-0.2 5,-0.1 0.908 118.0 53.1 -56.6 -44.7 5.8 7.5 -5.6 79 88 A A H > S+ 0 0 62 2,-0.2 4,-3.1 1,-0.2 -1,-0.2 0.914 107.3 50.0 -62.3 -40.7 3.0 7.9 -8.2 80 89 A N H > S+ 0 0 55 2,-0.2 4,-2.8 1,-0.2 -2,-0.2 0.946 111.2 50.1 -61.4 -44.3 1.8 11.1 -6.6 81 90 A M H X S+ 0 0 36 -4,-2.5 4,-3.1 1,-0.2 -2,-0.2 0.932 112.2 48.1 -55.2 -48.1 5.4 12.4 -6.7 82 91 A K H X S+ 0 0 127 -4,-2.9 4,-3.1 2,-0.2 -2,-0.2 0.941 109.4 51.8 -59.3 -51.2 5.5 11.4 -10.4 83 92 A K H X S+ 0 0 97 -4,-3.1 4,-3.1 1,-0.2 5,-0.2 0.942 114.4 43.7 -51.1 -52.4 2.2 13.1 -11.1 84 93 A H H X S+ 0 0 5 -4,-2.8 4,-2.9 1,-0.2 5,-0.4 0.953 113.1 51.0 -56.0 -54.2 3.5 16.3 -9.5 85 94 A F H X>S+ 0 0 75 -4,-3.1 5,-2.3 -5,-0.2 4,-1.8 0.890 117.2 40.9 -52.1 -43.4 6.9 16.0 -11.2 86 95 A N H <5S+ 0 0 74 -4,-3.1 3,-0.5 3,-0.3 -2,-0.2 0.996 116.0 48.0 -65.0 -64.8 5.1 15.5 -14.6 87 96 A R H <5S+ 0 0 162 -4,-3.1 -2,-0.2 1,-0.3 -1,-0.2 0.747 126.2 29.5 -45.7 -38.8 2.5 18.2 -14.0 88 97 A F H <5S+ 0 0 122 -4,-2.9 -1,-0.3 -5,-0.2 -2,-0.2 0.588 142.8 2.9-102.7 -19.4 5.1 20.8 -12.8 89 98 A H T ><5S+ 0 0 71 -4,-1.8 2,-2.4 -3,-0.5 3,-0.5 0.522 123.0 53.6-134.1 -64.5 8.3 19.7 -14.8 90 99 A N T 3 < + 0 0 89 -5,-2.3 -4,-0.1 1,-0.2 -3,-0.1 -0.321 64.1 134.4 -79.7 61.7 7.8 16.8 -17.2 91 100 A I T 3 0 0 115 -2,-2.4 -1,-0.2 -6,-0.1 -4,-0.1 0.859 360.0 360.0 -76.1 -36.6 4.9 18.6 -18.9 92 101 A K < 0 0 216 -3,-0.5 -1,-0.1 -6,-0.1 -3,-0.0 -0.490 360.0 360.0 -65.4 360.0 6.4 17.7 -22.3