==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=13-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RIBOSOME BINDING FACTOR 16-AUG-95 1TIF . COMPND 2 MOLECULE: TRANSLATION INITIATION FACTOR 3; . SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; . AUTHOR V.BIOU,F.SHU,V.RAMAKRISHNAN . 76 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5454.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 54 71.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 4 5.3 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 16 21.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 7.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 9.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 20 26.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 3 A K 0 0 183 0, 0.0 66,-0.0 0, 0.0 63,-0.0 0.000 360.0 360.0 360.0 -85.9 7.0 10.4 25.8 2 4 A D - 0 0 119 1,-0.0 2,-0.3 62,-0.0 0, 0.0 -0.260 360.0-169.0 -57.8 133.4 7.6 9.3 22.2 3 5 A F - 0 0 48 57,-0.0 2,-0.3 44,-0.0 43,-0.1 -0.903 23.2-118.3-121.9 150.8 8.7 5.7 21.9 4 6 A I - 0 0 66 41,-0.4 41,-2.3 -2,-0.3 2,-0.3 -0.711 40.7-166.8 -88.0 145.4 10.1 3.9 18.9 5 7 A I B > -A 44 0A 29 -2,-0.3 3,-2.4 39,-0.2 39,-0.2 -0.876 33.7 -18.9-133.7 166.2 7.9 1.0 17.8 6 8 A N G > S+ 0 0 44 37,-2.7 3,-1.6 -2,-0.3 27,-0.1 -0.094 127.1 6.9 44.2-121.4 7.7 -2.1 15.6 7 9 A E G 3 S+ 0 0 128 1,-0.3 -1,-0.3 26,-0.1 -3,-0.0 0.564 118.7 73.6 -68.2 -9.9 10.3 -2.1 12.8 8 10 A Q G < S+ 0 0 110 -3,-2.4 -1,-0.3 2,-0.0 2,-0.2 0.700 76.1 99.4 -73.4 -21.2 12.0 1.1 14.1 9 11 A I < - 0 0 0 -3,-1.6 -4,-0.0 -4,-0.2 35,-0.0 -0.506 50.7-175.7 -69.3 131.6 13.5 -1.1 16.9 10 12 A R + 0 0 182 -2,-0.2 -1,-0.1 3,-0.0 19,-0.1 0.581 41.4 118.5-104.4 -14.5 17.1 -2.2 16.2 11 13 A A - 0 0 25 1,-0.1 18,-0.2 18,-0.1 3,-0.1 -0.275 56.0-147.4 -57.8 135.0 17.7 -4.5 19.2 12 14 A R S S+ 0 0 219 1,-0.2 17,-2.3 16,-0.1 2,-0.3 0.880 84.9 15.9 -69.0 -43.1 18.5 -8.1 18.4 13 15 A E E S-B 28 0A 90 15,-0.3 2,-0.3 16,-0.1 15,-0.2 -0.979 70.6-175.9-133.6 147.9 16.8 -9.4 21.5 14 16 A V E -B 27 0A 0 13,-2.7 13,-3.0 -2,-0.3 2,-0.6 -0.919 32.0-113.6-139.0 159.5 14.4 -7.8 23.9 15 17 A R E -Bc 26 54A 89 38,-2.5 40,-2.7 -2,-0.3 2,-0.4 -0.898 42.3-144.9 -94.7 124.6 12.6 -8.7 27.2 16 18 A L E -Bc 25 55A 0 9,-2.9 8,-2.2 -2,-0.6 9,-0.8 -0.803 23.3-179.8-103.5 131.6 8.9 -8.9 26.3 17 19 A I E -Bc 23 56A 12 38,-2.2 40,-2.2 -2,-0.4 6,-0.2 -0.993 24.3-138.0-122.6 127.3 5.9 -7.9 28.5 18 20 A D > - 0 0 10 4,-2.5 3,-2.0 -2,-0.4 40,-0.0 -0.242 33.8 -86.5 -81.6 179.1 2.5 -8.4 27.0 19 21 A Q T 3 S+ 0 0 78 1,-0.3 -1,-0.1 2,-0.1 40,-0.1 0.675 126.9 46.8 -58.6 -19.6 -0.6 -6.1 27.1 20 22 A N T 3 S- 0 0 136 2,-0.1 -1,-0.3 38,-0.0 38,-0.0 0.389 123.0 -96.1-104.6 1.9 -1.7 -7.6 30.4 21 23 A G S < S+ 0 0 45 -3,-2.0 2,-0.3 1,-0.3 -2,-0.1 0.506 70.9 150.6 97.7 4.4 1.6 -7.5 32.3 22 24 A D - 0 0 94 1,-0.1 -4,-2.5 2,-0.0 2,-1.0 -0.578 46.6-131.8 -73.6 126.3 2.6 -11.1 31.6 23 25 A Q E -B 17 0A 105 -2,-0.3 -6,-0.2 -6,-0.2 3,-0.1 -0.734 24.9-177.2 -83.1 101.9 6.4 -11.4 31.5 24 26 A L E - 0 0 41 -8,-2.2 -7,-0.2 -2,-1.0 -1,-0.2 0.557 33.5-133.6 -78.2 -8.5 7.1 -13.3 28.3 25 27 A G E -B 16 0A 25 -9,-0.8 -9,-2.9 2,-0.1 2,-0.5 -0.380 48.5 -20.2 88.4-170.1 10.9 -13.4 28.8 26 28 A I E +B 15 0A 97 -11,-0.2 2,-0.3 -2,-0.1 -11,-0.2 -0.658 69.0 173.2 -81.0 125.1 13.7 -12.7 26.4 27 29 A K E -B 14 0A 49 -13,-3.0 -13,-2.7 -2,-0.5 2,-0.1 -0.929 37.0-104.8-130.9 154.4 12.7 -13.0 22.8 28 30 A S E > -B 13 0A 44 -2,-0.3 4,-2.3 -15,-0.2 -15,-0.3 -0.436 38.6-114.3 -70.5 153.9 14.3 -12.3 19.4 29 31 A K H > S+ 0 0 42 -17,-2.3 4,-2.5 1,-0.2 5,-0.2 0.895 117.4 57.1 -56.8 -39.7 13.0 -9.0 17.9 30 32 A Q H > S+ 0 0 119 -18,-0.3 4,-1.6 1,-0.2 -1,-0.2 0.919 108.8 43.0 -57.3 -49.3 11.5 -11.2 15.1 31 33 A E H > S+ 0 0 74 2,-0.2 4,-2.4 1,-0.2 -1,-0.2 0.884 112.5 54.0 -66.8 -37.4 9.5 -13.4 17.5 32 34 A A H X S+ 0 0 0 -4,-2.3 4,-2.1 1,-0.2 -2,-0.2 0.909 108.5 49.6 -62.3 -41.3 8.4 -10.3 19.5 33 35 A L H X S+ 0 0 26 -4,-2.5 4,-2.2 1,-0.2 -1,-0.2 0.841 109.4 52.4 -66.0 -35.1 7.1 -8.7 16.3 34 36 A E H X S+ 0 0 100 -4,-1.6 4,-2.4 2,-0.2 -2,-0.2 0.925 108.8 48.9 -66.8 -45.3 5.2 -11.9 15.4 35 37 A I H X S+ 0 0 23 -4,-2.4 4,-1.2 2,-0.2 -2,-0.2 0.907 112.1 48.9 -61.3 -42.9 3.5 -12.0 18.8 36 38 A A H <>S+ 0 0 2 -4,-2.1 5,-2.5 1,-0.2 3,-0.5 0.941 111.7 50.3 -62.1 -45.0 2.5 -8.3 18.5 37 39 A A H ><5S+ 0 0 66 -4,-2.2 3,-1.4 1,-0.2 -2,-0.2 0.882 105.8 53.2 -62.4 -43.1 1.2 -8.9 15.0 38 40 A R H 3<5S+ 0 0 212 -4,-2.4 -1,-0.2 1,-0.3 -2,-0.2 0.799 112.6 46.6 -65.7 -24.0 -1.0 -11.9 15.9 39 41 A R T 3<5S- 0 0 95 -4,-1.2 -1,-0.3 -3,-0.5 -2,-0.2 0.380 111.2-122.3 -95.7 1.9 -2.6 -9.8 18.6 40 42 A N T < 5S+ 0 0 145 -3,-1.4 2,-0.2 -4,-0.2 -3,-0.2 0.888 75.1 115.5 56.7 41.6 -3.1 -6.8 16.3 41 43 A L < - 0 0 41 -5,-2.5 2,-0.3 -6,-0.1 -1,-0.2 -0.719 65.6-102.2-127.7 178.5 -1.0 -4.6 18.6 42 44 A D E - D 0 58A 39 16,-2.5 16,-2.0 -2,-0.2 2,-0.7 -0.728 19.5-127.2-107.1 156.6 2.3 -2.8 18.4 43 45 A L E - D 0 57A 0 -2,-0.3 -37,-2.7 14,-0.2 2,-0.5 -0.922 34.5-166.8-101.1 113.0 5.7 -3.7 19.8 44 46 A V E -AD 5 56A 0 12,-2.6 12,-2.6 -2,-0.7 2,-1.4 -0.916 22.4-136.7-112.1 128.1 6.8 -0.6 21.8 45 47 A L E + D 0 55A 13 -41,-2.3 -41,-0.4 -2,-0.5 10,-0.2 -0.633 34.9 164.1 -80.2 92.6 10.3 0.0 23.1 46 48 A V E S+ 0 0 31 -2,-1.4 -1,-0.2 8,-1.0 9,-0.2 0.704 72.0 31.8 -84.8 -21.9 9.4 1.3 26.6 47 49 A A E > + D 0 54A 30 7,-2.0 7,-1.8 -3,-0.2 3,-1.5 -0.631 64.8 172.0-138.1 79.5 12.9 0.9 28.2 48 50 A P T 3 S+ 0 0 67 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 0.802 80.5 45.6 -56.1 -36.4 15.6 1.5 25.5 49 51 A N T 3 S+ 0 0 153 3,-0.1 2,-0.1 4,-0.1 -2,-0.0 0.345 87.3 107.8 -95.7 6.9 18.4 1.4 28.0 50 52 A A S < S- 0 0 34 -3,-1.5 -3,-0.0 4,-0.1 -35,-0.0 -0.364 81.9 -89.5 -77.9 163.6 17.5 -1.6 30.0 51 53 A K S S+ 0 0 197 1,-0.3 -37,-0.1 2,-0.1 -2,-0.1 -0.939 121.6 11.6-123.2 105.3 19.4 -4.9 29.6 52 54 A P S S- 0 0 45 0, 0.0 -1,-0.3 0, 0.0 -38,-0.1 0.729 116.7-100.7 -79.6 168.5 18.1 -6.3 27.4 53 55 A P - 0 0 31 0, 0.0 -38,-2.5 0, 0.0 2,-0.4 -0.248 38.3-125.4 -53.5 138.5 15.8 -3.5 26.1 54 56 A V E -cD 15 47A 8 -7,-1.8 -7,-2.0 -40,-0.2 -8,-1.0 -0.772 25.7-171.8 -95.9 130.3 12.3 -3.9 27.4 55 57 A C E -cD 16 45A 0 -40,-2.7 -38,-2.2 -2,-0.4 2,-0.4 -0.930 6.3-157.7-118.6 143.3 9.3 -3.9 24.9 56 58 A R E -cD 17 44A 92 -12,-2.6 -12,-2.6 -2,-0.4 2,-0.6 -0.951 16.9-131.1-121.6 138.5 5.6 -3.8 25.8 57 59 A I E + D 0 43A 0 -40,-2.2 2,-0.3 -2,-0.4 -14,-0.2 -0.819 54.1 124.3 -89.3 122.2 2.8 -5.1 23.6 58 60 A M E - D 0 42A 25 -16,-2.0 -16,-2.5 -2,-0.6 2,-1.0 -0.976 70.0 -85.4-166.2 168.2 0.1 -2.4 23.4 59 61 A D > - 0 0 69 -2,-0.3 4,-2.2 -18,-0.2 5,-0.2 -0.786 38.8-165.4 -87.0 106.2 -1.9 -0.2 21.0 60 62 A Y H > S+ 0 0 29 -2,-1.0 4,-2.9 1,-0.2 5,-0.2 0.862 83.2 51.6 -61.1 -41.1 0.5 2.7 20.5 61 63 A G H > S+ 0 0 43 2,-0.2 4,-2.6 1,-0.2 5,-0.2 0.945 111.9 45.5 -63.4 -46.8 -2.1 5.0 19.0 62 64 A K H > S+ 0 0 143 2,-0.2 4,-2.1 1,-0.2 -2,-0.2 0.898 114.6 49.8 -63.3 -40.4 -4.6 4.5 21.8 63 65 A F H X S+ 0 0 60 -4,-2.2 4,-2.0 1,-0.2 -2,-0.2 0.951 113.1 45.2 -62.4 -51.7 -1.8 5.0 24.4 64 66 A R H X S+ 0 0 69 -4,-2.9 4,-2.2 1,-0.2 5,-0.2 0.875 111.2 52.6 -61.9 -40.7 -0.5 8.2 22.8 65 67 A F H X S+ 0 0 106 -4,-2.6 4,-2.5 1,-0.2 -1,-0.2 0.940 110.5 48.0 -61.2 -47.0 -4.0 9.7 22.4 66 68 A E H X S+ 0 0 94 -4,-2.1 4,-2.7 1,-0.2 -1,-0.2 0.866 110.4 51.8 -61.9 -38.2 -4.8 9.1 26.0 67 69 A Q H X S+ 0 0 62 -4,-2.0 4,-2.1 2,-0.2 -1,-0.2 0.921 113.6 43.0 -65.2 -44.7 -1.5 10.6 27.1 68 70 A Q H X S+ 0 0 90 -4,-2.2 4,-2.4 2,-0.2 -2,-0.2 0.856 112.4 54.1 -68.9 -36.4 -2.1 13.8 25.1 69 71 A K H X S+ 0 0 87 -4,-2.5 4,-2.9 -5,-0.2 5,-0.3 0.975 108.8 49.4 -59.7 -54.0 -5.7 13.9 26.2 70 72 A K H X S+ 0 0 95 -4,-2.7 4,-2.0 1,-0.2 -2,-0.2 0.897 111.8 47.6 -51.3 -50.4 -4.5 13.8 29.9 71 73 A E H < S+ 0 0 40 -4,-2.1 4,-0.3 1,-0.2 -1,-0.2 0.913 114.7 45.7 -59.9 -47.0 -2.0 16.6 29.4 72 74 A K H >< S+ 0 0 122 -4,-2.4 3,-1.4 1,-0.2 4,-0.3 0.939 111.9 49.8 -63.1 -50.5 -4.5 18.8 27.6 73 75 A E H >< S+ 0 0 92 -4,-2.9 3,-1.3 1,-0.3 -2,-0.2 0.899 107.0 54.4 -57.8 -44.8 -7.4 18.3 30.0 74 76 A A T 3< S+ 0 0 83 -4,-2.0 -1,-0.3 -5,-0.3 -2,-0.2 0.540 110.7 48.3 -69.0 -6.5 -5.3 19.0 33.1 75 77 A R T < 0 0 181 -3,-1.4 -1,-0.2 -4,-0.3 -2,-0.2 0.353 360.0 360.0-117.3 7.7 -4.2 22.4 31.6 76 78 A K < 0 0 211 -3,-1.3 -2,-0.2 -4,-0.3 -3,-0.1 0.550 360.0 360.0-130.8 360.0 -7.5 23.9 30.5