==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=13-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER MEMBRANE PROTEIN 08-JUN-04 1TKN . COMPND 2 MOLECULE: AMYLOID BETA A4 PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR I.DULUBOVA,A.HO,I.HURYEVA,T.C.SUDHOF,J.RIZO . 110 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7836.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 99 90.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 10.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 88 80.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 2 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 460 A R > 0 0 249 0, 0.0 4,-1.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 24.5 -7.0 0.8 -12.5 2 461 A V H > + 0 0 73 2,-0.2 4,-2.3 1,-0.2 3,-0.3 0.921 360.0 57.2 -72.8 -45.8 -3.7 0.7 -10.6 3 462 A E H > S+ 0 0 44 1,-0.3 4,-1.5 2,-0.2 -1,-0.2 0.899 108.3 48.4 -51.8 -43.3 -1.5 1.7 -13.5 4 463 A A H > S+ 0 0 38 1,-0.2 4,-1.4 2,-0.2 -1,-0.3 0.832 108.1 55.9 -66.5 -32.5 -3.6 4.8 -13.9 5 464 A M H X S+ 0 0 123 -4,-1.0 4,-1.6 -3,-0.3 -2,-0.2 0.900 106.1 49.4 -66.7 -41.7 -3.3 5.5 -10.2 6 465 A L H X S+ 0 0 15 -4,-2.3 4,-1.4 1,-0.2 -1,-0.2 0.846 106.7 56.8 -66.2 -34.3 0.5 5.4 -10.4 7 466 A N H X S+ 0 0 38 -4,-1.5 4,-3.4 -5,-0.2 -1,-0.2 0.867 103.0 55.1 -65.0 -37.0 0.4 7.8 -13.3 8 467 A D H X S+ 0 0 99 -4,-1.4 4,-2.8 2,-0.2 5,-0.5 0.958 105.5 49.8 -61.1 -53.1 -1.5 10.4 -11.2 9 468 A R H X S+ 0 0 173 -4,-1.6 4,-0.9 1,-0.2 -1,-0.2 0.842 118.4 41.5 -55.0 -34.4 1.1 10.5 -8.4 10 469 A R H X S+ 0 0 9 -4,-1.4 4,-2.0 2,-0.2 -2,-0.2 0.863 114.6 51.3 -81.2 -38.7 3.7 11.0 -11.1 11 470 A R H >X S+ 0 0 130 -4,-3.4 4,-3.4 2,-0.2 3,-0.5 0.989 113.2 42.4 -60.5 -62.6 1.6 13.4 -13.1 12 471 A L H 3X S+ 0 0 93 -4,-2.8 4,-2.2 1,-0.3 -1,-0.2 0.852 113.0 55.9 -53.3 -37.1 0.7 15.7 -10.2 13 472 A A H 3X S+ 0 0 8 -4,-0.9 4,-1.8 -5,-0.5 -1,-0.3 0.891 112.6 41.6 -63.9 -38.7 4.3 15.4 -9.1 14 473 A L H > - 0 0 136 -7,-0.3 4,-3.6 1,-0.2 3,-1.3 -0.730 21.9-175.6 -99.1 86.5 13.2 27.7 -6.8 28 487 A P H 3> S+ 0 0 35 0, 0.0 4,-0.9 0, 0.0 -1,-0.2 0.731 88.8 51.8 -52.0 -22.0 15.6 25.4 -8.6 29 488 A R H 34 S+ 0 0 139 2,-0.2 4,-0.4 3,-0.1 -2,-0.1 0.767 114.1 40.1 -86.9 -27.8 16.2 23.8 -5.2 30 489 A H H <> S+ 0 0 72 -3,-1.3 4,-1.5 2,-0.2 3,-0.4 0.837 114.3 53.3 -86.4 -36.6 12.5 23.2 -4.5 31 490 A V H X S+ 0 0 1 -4,-3.6 4,-1.2 1,-0.2 -2,-0.2 0.854 103.5 56.9 -65.6 -35.9 11.7 22.2 -8.1 32 491 A F H X S+ 0 0 48 -4,-0.9 4,-1.5 -5,-0.4 -1,-0.2 0.785 102.2 59.4 -66.6 -25.9 14.5 19.6 -7.9 33 492 A N H >> S+ 0 0 61 -3,-0.4 4,-1.4 -4,-0.4 3,-0.6 0.984 101.9 48.1 -66.1 -59.4 12.7 18.1 -4.9 34 493 A M H 3X S+ 0 0 32 -4,-1.5 4,-3.3 1,-0.2 5,-0.2 0.815 107.2 62.3 -51.1 -31.0 9.4 17.4 -6.6 35 494 A L H 3X S+ 0 0 10 -4,-1.2 4,-3.3 2,-0.2 -1,-0.2 0.949 99.8 49.4 -61.0 -51.4 11.5 15.8 -9.3 36 495 A K H X S+ 0 0 98 -4,-1.8 4,-1.4 1,-0.2 3,-0.5 0.941 112.7 46.3 -57.5 -50.0 7.9 0.4 -14.5 47 506 A Q H 3X S+ 0 0 107 -4,-2.1 4,-1.4 1,-0.2 -1,-0.2 0.813 108.1 58.7 -62.8 -30.0 8.0 -2.4 -11.9 48 507 A H H 3X S+ 0 0 49 -4,-1.6 4,-1.5 -5,-0.2 -1,-0.2 0.839 100.0 56.9 -68.3 -33.0 4.2 -2.5 -12.1 49 508 A T H X S+ 0 0 97 -4,-2.3 4,-2.3 -5,-0.2 3,-1.2 0.971 110.5 40.3 -61.8 -55.6 -0.1 -11.6 -14.5 56 515 A V H 3X S+ 0 0 10 -4,-2.8 4,-2.3 1,-0.3 8,-0.4 0.809 110.8 61.2 -63.1 -28.9 -1.8 -11.4 -17.9 57 516 A R H 3< S+ 0 0 143 -4,-1.0 -1,-0.3 -5,-0.4 -2,-0.2 0.741 109.4 41.8 -69.5 -23.3 0.4 -14.4 -18.9 58 517 A M H << S+ 0 0 124 -3,-1.2 -2,-0.2 -4,-1.0 -1,-0.2 0.888 127.3 28.8 -88.6 -47.6 -1.3 -16.4 -16.1 59 518 A V H < S+ 0 0 75 -4,-2.3 -3,-0.2 1,-0.2 -2,-0.2 0.908 139.7 19.8 -79.4 -46.8 -4.9 -15.3 -16.6 60 519 A D X + 0 0 69 -4,-2.3 4,-2.8 -5,-0.3 -1,-0.2 -0.634 65.5 160.3-127.3 74.3 -4.8 -14.5 -20.3 61 520 A P H > S+ 0 0 57 0, 0.0 4,-1.3 0, 0.0 -1,-0.1 0.823 76.5 57.4 -62.1 -32.7 -1.7 -16.4 -21.9 62 521 A K H > S+ 0 0 174 2,-0.2 4,-0.6 1,-0.2 3,-0.3 0.972 119.4 26.6 -63.5 -57.0 -3.3 -16.1 -25.3 63 522 A K H > S+ 0 0 97 1,-0.2 4,-3.4 2,-0.2 5,-0.3 0.779 109.8 74.7 -77.6 -27.4 -3.6 -12.3 -25.4 64 523 A A H X S+ 0 0 2 -4,-2.8 4,-0.8 -8,-0.4 -1,-0.2 0.884 99.5 45.1 -51.0 -41.8 -0.7 -11.9 -22.9 65 524 A A H < S+ 0 0 48 -4,-1.3 4,-0.3 -3,-0.3 -1,-0.3 0.804 114.9 48.3 -72.7 -30.2 1.6 -12.8 -25.8 66 525 A Q H < S+ 0 0 151 -4,-0.6 3,-0.4 -3,-0.3 -2,-0.2 0.820 112.8 47.0 -78.6 -33.2 -0.2 -10.4 -28.1 67 526 A I H >X S+ 0 0 25 -4,-3.4 4,-2.6 1,-0.2 3,-1.6 0.600 84.9 95.9 -83.6 -12.2 -0.2 -7.6 -25.6 68 527 A R H 3X S+ 0 0 112 -4,-0.8 4,-2.6 -5,-0.3 -1,-0.2 0.879 82.3 53.3 -42.6 -48.6 3.5 -8.1 -24.9 69 528 A S H 3> S+ 0 0 100 -3,-0.4 4,-1.7 -4,-0.3 -1,-0.3 0.830 111.4 47.1 -58.9 -32.7 4.3 -5.4 -27.4 70 529 A Q H <> S+ 0 0 125 -3,-1.6 4,-1.3 -4,-0.2 -2,-0.2 0.931 111.4 48.0 -75.1 -47.5 2.0 -3.1 -25.5 71 530 A V H X S+ 0 0 8 -4,-2.6 4,-1.3 1,-0.2 -2,-0.2 0.846 109.7 57.1 -61.2 -32.8 3.4 -4.0 -22.0 72 531 A M H >X S+ 0 0 80 -4,-2.6 4,-1.9 -5,-0.3 3,-0.7 0.964 102.6 50.5 -62.8 -54.0 6.9 -3.4 -23.5 73 532 A T H 3X S+ 0 0 68 -4,-1.7 4,-3.3 1,-0.3 -1,-0.2 0.793 102.3 66.6 -55.3 -26.9 6.2 0.2 -24.6 74 533 A H H 3X S+ 0 0 51 -4,-1.3 4,-1.6 2,-0.2 -1,-0.3 0.946 102.4 43.5 -59.8 -49.6 4.9 0.7 -21.0 75 534 A L H X S+ 0 0 116 -4,-4.4 4,-1.1 1,-0.2 3,-1.0 0.944 108.8 48.8 -60.2 -49.7 10.9 7.8 -22.4 81 540 A R H 3X S+ 0 0 81 -4,-3.1 4,-2.0 -5,-0.3 3,-0.4 0.864 102.6 63.9 -58.6 -36.0 8.3 10.0 -20.7 82 541 A M H 3X S+ 0 0 25 -4,-1.0 4,-1.3 -5,-0.3 -1,-0.3 0.853 100.6 52.1 -56.5 -35.0 11.0 10.9 -18.2 83 542 A N H < S+ 0 0 2 -4,-1.7 3,-2.8 1,-0.2 7,-0.4 0.824 105.7 71.2 -79.9 -32.0 11.9 22.2 -17.7 90 549 A Y H 3< S+ 0 0 106 -4,-3.0 -1,-0.2 1,-0.3 -2,-0.2 0.777 75.6 85.3 -54.3 -24.2 14.7 22.4 -20.2 91 550 A N T 3< S+ 0 0 121 -4,-0.9 -1,-0.3 -3,-0.3 -2,-0.2 0.804 86.0 58.3 -47.2 -29.1 12.7 25.4 -21.6 92 551 A V <> - 0 0 42 -3,-2.8 4,-4.2 1,-0.2 5,-0.4 -0.703 69.9-178.2-104.7 78.1 14.6 27.3 -18.9 93 552 A P H > S+ 0 0 99 0, 0.0 4,-1.0 0, 0.0 -1,-0.2 0.779 83.8 55.2 -46.0 -29.8 18.3 26.7 -19.8 94 553 A A H > S+ 0 0 60 2,-0.2 4,-1.0 3,-0.1 5,-0.1 0.962 119.6 27.3 -70.0 -54.1 19.2 28.7 -16.8 95 554 A V H > S+ 0 0 12 -3,-0.3 4,-3.3 2,-0.2 5,-0.4 0.886 115.8 62.9 -75.1 -41.9 17.2 26.6 -14.2 96 555 A A H X S+ 0 0 2 -4,-4.2 4,-1.4 -7,-0.4 -1,-0.2 0.816 106.8 45.6 -52.9 -34.6 17.4 23.4 -16.3 97 556 A E H X S+ 0 0 105 -4,-1.0 4,-1.3 -5,-0.4 -1,-0.2 0.826 114.5 46.4 -80.6 -33.1 21.2 23.5 -15.9 98 557 A E H X S+ 0 0 100 -4,-1.0 4,-1.4 -3,-0.2 -2,-0.2 0.907 118.1 41.7 -74.4 -43.0 21.1 24.3 -12.1 99 558 A I H X S+ 0 0 5 -4,-3.3 4,-3.5 1,-0.2 5,-0.2 0.855 110.6 57.5 -72.1 -36.8 18.5 21.7 -11.3 100 559 A Q H X S+ 0 0 46 -4,-1.4 4,-2.5 -5,-0.4 5,-0.3 0.895 105.4 51.0 -61.5 -41.5 20.1 19.1 -13.7 101 560 A D H X S+ 0 0 102 -4,-1.3 4,-1.1 1,-0.2 -1,-0.2 0.934 120.3 33.6 -62.0 -48.5 23.4 19.3 -11.8 102 561 A E H X S+ 0 0 56 -4,-1.4 4,-1.3 2,-0.2 -2,-0.2 0.831 117.7 55.4 -77.1 -34.1 21.8 18.8 -8.4 103 562 A V H >X S+ 0 0 10 -4,-3.5 4,-1.6 2,-0.2 3,-0.6 0.968 110.1 43.3 -63.5 -54.5 19.1 16.5 -9.7 104 563 A D H 3X S+ 0 0 103 -4,-2.5 4,-1.0 1,-0.3 -1,-0.2 0.857 115.1 51.8 -59.4 -35.3 21.4 14.0 -11.3 105 564 A E H 3< S+ 0 0 126 -4,-1.1 4,-0.5 -5,-0.3 -1,-0.3 0.749 107.0 53.7 -72.8 -25.0 23.6 14.2 -8.2 106 565 A L H << S+ 0 0 35 -4,-1.3 4,-0.3 -3,-0.6 -2,-0.2 0.797 110.0 45.6 -78.9 -31.8 20.6 13.5 -6.0 107 566 A L H >< S+ 0 0 38 -4,-1.6 3,-0.8 1,-0.2 -2,-0.2 0.649 91.0 82.6 -86.7 -16.7 19.6 10.3 -7.8 108 567 A Q T 3< S+ 0 0 123 -4,-1.0 -1,-0.2 1,-0.3 -2,-0.1 0.912 90.1 53.2 -52.5 -44.9 23.2 8.9 -7.9 109 568 A K T 3 0 0 193 -4,-0.5 -1,-0.3 1,-0.3 -2,-0.2 0.806 360.0 360.0 -60.7 -30.3 22.7 7.6 -4.4 110 569 A E < 0 0 135 -3,-0.8 -1,-0.3 -4,-0.3 -2,-0.2 0.854 360.0 360.0 -59.7 360.0 19.6 5.8 -5.6