==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=13-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA REPAIR 15-JUN-04 1TP4 . COMPND 2 MOLECULE: UV EXCISION REPAIR PROTEIN RAD23 HOMOLOG A; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR M.KAMIONKA,J.FEIGON . 59 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4296.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 48 81.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 5.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 12 20.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 29 49.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 3.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 230 A N > 0 0 83 0, 0.0 3,-0.9 0, 0.0 4,-0.4 0.000 360.0 360.0 360.0 145.6 -1.4 -5.7 -16.6 2 231 A P T 3> + 0 0 39 0, 0.0 4,-0.9 0, 0.0 3,-0.1 0.473 360.0 76.2 -71.8 -0.7 -2.1 -2.1 -15.6 3 232 A L H 3> S+ 0 0 1 2,-0.2 4,-3.6 1,-0.2 5,-0.5 0.867 73.3 76.4 -77.8 -38.4 0.2 -2.6 -12.6 4 233 A E H <> S+ 0 0 109 -3,-0.9 4,-1.6 1,-0.3 -1,-0.2 0.878 105.4 36.2 -36.8 -54.4 3.3 -2.4 -14.7 5 234 A F H > S+ 0 0 96 -4,-0.4 4,-4.6 2,-0.2 -1,-0.3 0.866 114.5 58.1 -69.8 -36.6 2.9 1.4 -14.8 6 235 A L H < S+ 0 0 3 -4,-0.9 6,-1.2 1,-0.2 -2,-0.2 0.924 110.0 42.6 -59.0 -46.2 1.5 1.4 -11.2 7 236 A R H < S+ 0 0 70 -4,-3.6 -1,-0.2 1,-0.2 -2,-0.2 0.831 121.0 43.1 -69.4 -33.1 4.7 -0.3 -9.9 8 237 A D H < S+ 0 0 124 -4,-1.6 -2,-0.2 -5,-0.5 -3,-0.2 0.927 105.8 69.4 -78.0 -49.2 6.8 2.0 -12.1 9 238 A Q S >X S- 0 0 83 -4,-4.6 3,-1.3 -5,-0.1 4,-0.5 -0.200 103.1 -98.2 -67.7 162.4 5.0 5.3 -11.5 10 239 A P H 3>>S+ 0 0 79 0, 0.0 4,-3.0 0, 0.0 5,-0.6 0.622 102.7 100.6 -56.4 -12.4 5.0 7.0 -8.1 11 240 A Q H 3>5S+ 0 0 61 -6,-0.2 4,-1.6 1,-0.2 5,-0.2 0.887 88.4 37.3 -40.3 -51.6 1.7 5.3 -7.4 12 241 A F H <>5S+ 0 0 41 -3,-1.3 4,-2.0 -6,-1.2 -1,-0.2 0.966 127.2 35.9 -67.7 -53.8 3.5 2.7 -5.3 13 242 A Q H X5S+ 0 0 76 -4,-0.5 4,-2.1 2,-0.2 -2,-0.2 0.990 115.1 54.1 -63.3 -61.6 6.0 5.1 -3.7 14 243 A N H >X5S+ 0 0 92 -4,-3.0 4,-1.9 1,-0.2 3,-0.5 0.888 109.7 49.6 -37.0 -58.0 3.7 8.1 -3.5 15 244 A M H 3XS+ 0 0 101 -4,-2.1 4,-1.9 -3,-0.5 5,-0.6 0.994 111.0 40.8 -60.9 -67.3 4.6 8.2 1.6 18 247 A V H X5S+ 0 0 50 -4,-1.9 4,-1.3 1,-0.3 6,-0.3 0.887 125.2 39.4 -48.9 -45.6 1.2 9.5 2.5 19 248 A I H <5S+ 0 0 4 -4,-2.9 -1,-0.3 -5,-0.2 -2,-0.2 0.762 109.5 64.6 -77.4 -26.2 0.4 6.3 4.4 20 249 A Q H <5S+ 0 0 55 -4,-2.1 -2,-0.2 -5,-0.5 -3,-0.2 0.994 122.1 13.8 -59.3 -67.2 4.0 6.2 5.8 21 250 A Q H <5S+ 0 0 131 -4,-1.9 -2,-0.2 1,-0.3 -3,-0.2 0.940 140.0 39.4 -75.4 -49.5 3.8 9.3 7.9 22 251 A N ><< + 0 0 94 -4,-1.3 2,-1.3 -5,-0.6 3,-0.8 -0.605 68.0 169.2-101.7 71.4 0.1 9.8 7.7 23 252 A P T 3 + 0 0 90 0, 0.0 -4,-0.2 0, 0.0 -1,-0.1 -0.041 49.3 103.1 -73.8 36.9 -1.1 6.1 8.1 24 253 A A T 3 S+ 0 0 74 -2,-1.3 -5,-0.1 -6,-0.3 -6,-0.0 0.905 86.6 31.5 -84.5 -48.5 -4.6 7.3 8.6 25 254 A L S X S- 0 0 112 -3,-0.8 3,-0.8 -7,-0.2 -1,-0.1 0.489 102.0-153.0 -87.5 -5.0 -6.1 6.6 5.1 26 255 A L T 3 - 0 0 92 -4,-0.3 2,-2.6 1,-0.2 3,-0.4 0.270 45.3 -53.1 50.7 171.3 -3.7 3.6 4.8 27 256 A P T > S+ 0 0 28 0, 0.0 3,-1.6 0, 0.0 4,-0.4 -0.232 80.0 145.9 -74.1 52.0 -2.6 2.4 1.3 28 257 A A T X> + 0 0 24 -2,-2.6 4,-2.1 -3,-0.8 3,-1.2 0.775 47.1 92.3 -60.3 -26.3 -6.2 2.2 0.1 29 258 A L H 3> S+ 0 0 55 -3,-0.4 4,-1.3 1,-0.3 -1,-0.3 0.811 86.4 51.3 -36.8 -37.6 -5.0 3.2 -3.3 30 259 A L H <> S+ 0 0 28 -3,-1.6 4,-2.8 2,-0.2 5,-0.4 0.911 105.3 53.6 -69.4 -43.1 -4.7 -0.6 -3.9 31 260 A Q H <> S+ 0 0 116 -3,-1.2 4,-1.7 -4,-0.4 5,-0.2 0.891 111.0 46.6 -58.5 -40.8 -8.3 -1.2 -2.7 32 261 A Q H X S+ 0 0 114 -4,-2.1 4,-2.6 3,-0.2 -1,-0.2 0.800 112.1 52.9 -71.6 -29.2 -9.5 1.4 -5.2 33 262 A L H X S+ 0 0 31 -4,-1.3 4,-1.3 -5,-0.4 8,-0.4 0.969 116.0 35.6 -70.3 -55.5 -7.4 -0.1 -7.9 34 263 A G H < S+ 0 0 8 -4,-2.8 7,-0.6 6,-0.2 8,-0.2 0.785 125.8 43.7 -69.7 -26.6 -8.6 -3.7 -7.6 35 264 A Q H < S+ 0 0 149 -4,-1.7 -3,-0.2 -5,-0.4 -2,-0.2 0.923 104.1 62.3 -82.7 -49.8 -12.1 -2.4 -6.8 36 265 A E H < S+ 0 0 128 -4,-2.6 -3,-0.2 -5,-0.2 -2,-0.2 0.913 115.4 27.4 -38.1 -70.1 -12.3 0.3 -9.5 37 266 A N S X S- 0 0 75 -4,-1.3 4,-1.3 -5,-0.2 3,-0.2 -0.871 71.1-146.5-103.4 127.1 -12.0 -2.2 -12.4 38 267 A P T 4 S+ 0 0 106 0, 0.0 4,-0.5 0, 0.0 -1,-0.1 0.698 106.0 45.4 -61.3 -18.2 -13.1 -5.8 -11.9 39 268 A Q T > S+ 0 0 139 2,-0.1 4,-2.1 3,-0.1 5,-0.2 0.734 101.3 67.0 -95.2 -28.9 -10.3 -6.8 -14.3 40 269 A L H > S+ 0 0 29 -3,-0.2 4,-3.1 2,-0.2 5,-0.3 0.979 95.2 54.1 -55.1 -63.6 -7.6 -4.6 -12.6 41 270 A L H X S+ 0 0 92 -4,-1.3 4,-1.5 -7,-0.6 -1,-0.2 0.879 108.7 50.7 -36.6 -56.6 -7.5 -6.5 -9.3 42 271 A Q H >4 S+ 0 0 132 -4,-0.5 3,-1.2 1,-0.3 4,-0.3 0.944 113.4 43.3 -49.0 -57.7 -6.8 -9.7 -11.2 43 272 A Q H >< S+ 0 0 61 -4,-2.1 3,-1.2 1,-0.3 -1,-0.3 0.841 109.0 59.9 -58.9 -33.9 -4.0 -8.2 -13.2 44 273 A I H >< S+ 0 0 2 -4,-3.1 3,-5.1 1,-0.3 -1,-0.3 0.773 78.5 89.7 -65.5 -26.1 -2.8 -6.5 -10.0 45 274 A S T << S+ 0 0 61 -4,-1.5 -1,-0.3 -3,-1.2 -2,-0.2 0.817 73.0 71.0 -39.0 -37.7 -2.4 -10.0 -8.6 46 275 A R T < S+ 0 0 158 -3,-1.2 4,-0.3 -4,-0.3 -1,-0.3 0.700 94.7 69.3 -55.4 -18.1 1.1 -9.9 -10.0 47 276 A H < + 0 0 32 -3,-5.1 2,-1.7 1,-0.1 -2,-0.1 0.399 53.2 90.1 -76.8-144.0 1.7 -7.3 -7.2 48 277 A Q S > S+ 0 0 132 1,-0.2 4,-1.1 0, 0.0 5,-0.3 -0.488 95.5 48.9 86.6 -67.2 1.9 -8.1 -3.5 49 278 A E H > S+ 0 0 140 -2,-1.7 4,-1.0 -3,-0.2 -1,-0.2 0.954 126.2 25.9 -68.6 -51.6 5.6 -8.8 -3.4 50 279 A Q H > S+ 0 0 89 -4,-0.3 4,-2.0 2,-0.2 5,-0.3 0.945 125.4 48.1 -77.2 -52.7 6.6 -5.6 -5.3 51 280 A F H > S+ 0 0 11 1,-0.2 4,-1.7 2,-0.2 3,-0.2 0.945 121.2 36.8 -53.7 -53.4 3.6 -3.5 -4.4 52 281 A I H X S+ 0 0 71 -4,-1.1 4,-1.0 1,-0.2 -1,-0.2 0.846 107.0 69.4 -69.0 -33.4 3.8 -4.3 -0.7 53 282 A Q H >< S+ 0 0 108 -4,-1.0 3,-0.6 -5,-0.3 -1,-0.2 0.918 109.9 33.4 -49.4 -49.5 7.6 -4.3 -0.9 54 283 A M H >< S+ 0 0 3 -4,-2.0 3,-2.8 1,-0.2 -1,-0.2 0.826 102.5 76.6 -77.1 -32.3 7.6 -0.6 -1.4 55 284 A L H 3< S+ 0 0 16 -4,-1.7 -1,-0.2 1,-0.3 -2,-0.2 0.729 98.1 49.7 -50.3 -20.8 4.5 -0.1 0.8 56 285 A N T << S- 0 0 93 -4,-1.0 -1,-0.3 -3,-0.6 -2,-0.1 -0.108 86.2-176.6-109.4 32.7 7.0 -0.7 3.6 57 286 A E < - 0 0 10 -3,-2.8 -3,-0.1 1,-0.1 -2,-0.0 0.001 28.9-130.9 -34.5 121.7 9.5 1.9 2.3 58 287 A P 0 0 132 0, 0.0 -1,-0.1 0, 0.0 -4,-0.0 0.918 360.0 360.0 -44.2 -58.4 12.5 1.8 4.7 59 288 A P 0 0 108 0, 0.0 -39,-0.0 0, 0.0 -2,-0.0 -0.464 360.0 360.0 -65.2 360.0 12.7 5.6 5.2