==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=13-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 23-JUN-04 1TTY . COMPND 2 MOLECULE: RNA POLYMERASE SIGMA FACTOR RPOD; . SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; . AUTHOR L.J.LAMBERT,Y.WEI,V.SCHIRF,B.DEMELER,M.H.WERNER . 86 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7306.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 55 64.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 9.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 41 47.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 3.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 1 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 313 A K > 0 0 197 0, 0.0 3,-1.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -70.4 204.9 257.9 140.0 2 314 A E T 3 + 0 0 169 1,-0.3 3,-0.1 3,-0.0 0, 0.0 -0.281 360.0 16.2 -60.5 143.5 208.4 256.5 139.5 3 315 A A T 3 S+ 0 0 114 1,-0.2 2,-0.4 2,-0.0 -1,-0.3 0.826 97.5 138.1 61.8 31.9 210.8 256.9 142.4 4 316 A M < + 0 0 131 -3,-1.0 -1,-0.2 1,-0.1 0, 0.0 -0.918 4.4 113.4-113.5 135.5 207.8 257.6 144.7 5 317 A R + 0 0 212 -2,-0.4 -1,-0.1 -3,-0.1 -3,-0.0 0.155 23.7 177.4-155.6 -74.7 207.4 256.3 148.2 6 318 A M + 0 0 144 2,-0.1 3,-0.2 1,-0.1 -2,-0.0 0.910 17.3 167.0 52.4 48.0 207.5 258.7 151.2 7 319 A L - 0 0 141 1,-0.2 2,-0.2 2,-0.0 -1,-0.1 0.927 62.0 -44.3 -56.6 -48.9 206.7 255.9 153.6 8 320 A M + 0 0 150 1,-0.0 -1,-0.2 2,-0.0 -2,-0.1 -0.825 50.8 169.3 176.7 143.2 207.7 258.0 156.6 9 321 A R + 0 0 139 -2,-0.2 4,-0.3 -3,-0.2 -1,-0.0 -0.044 52.5 100.8-157.2 40.2 210.3 260.5 157.8 10 322 A E S > S+ 0 0 142 2,-0.1 4,-2.8 3,-0.1 3,-0.2 0.918 84.4 38.7 -91.3 -65.1 209.0 262.1 161.0 11 323 A E H > S+ 0 0 54 1,-0.2 4,-1.8 2,-0.2 5,-0.2 0.844 115.3 55.7 -58.1 -36.2 210.8 260.4 163.9 12 324 A L H > S+ 0 0 56 1,-0.2 4,-1.9 2,-0.2 -1,-0.2 0.900 113.0 41.4 -64.2 -40.8 214.0 260.2 161.9 13 325 A E H > S+ 0 0 114 -4,-0.3 4,-1.3 -3,-0.2 -2,-0.2 0.877 112.3 53.2 -74.2 -41.0 213.9 264.0 161.4 14 326 A K H < S+ 0 0 74 -4,-2.8 4,-0.3 1,-0.2 -2,-0.2 0.839 115.3 41.6 -64.4 -34.0 212.8 264.9 164.9 15 327 A V H >X S+ 0 0 9 -4,-1.8 3,-1.5 -5,-0.2 4,-1.5 0.910 107.7 57.3 -80.2 -47.0 215.7 262.9 166.4 16 328 A L H 3< S+ 0 0 77 -4,-1.9 -2,-0.2 1,-0.3 -1,-0.2 0.802 94.1 69.2 -55.3 -33.0 218.5 263.9 164.0 17 329 A K T 3< S+ 0 0 145 -4,-1.3 -1,-0.3 1,-0.2 -2,-0.1 0.806 106.7 38.5 -58.4 -29.7 218.0 267.6 164.8 18 330 A T T <4 S+ 0 0 21 -3,-1.5 2,-0.2 -4,-0.3 -1,-0.2 0.839 103.5 78.6 -89.8 -36.9 219.3 267.0 168.4 19 331 A L S < S- 0 0 9 -4,-1.5 39,-0.0 1,-0.1 43,-0.0 -0.516 81.9-123.4 -75.4 139.4 222.1 264.5 167.5 20 332 A S > - 0 0 43 -2,-0.2 4,-3.4 1,-0.1 5,-0.3 -0.197 32.9 -95.6 -73.4 170.0 225.4 265.9 166.1 21 333 A P H > S+ 0 0 100 0, 0.0 4,-1.4 0, 0.0 -1,-0.1 0.880 127.3 42.9 -54.6 -41.7 226.8 264.8 162.7 22 334 A R H > S+ 0 0 180 2,-0.2 4,-1.2 1,-0.1 -3,-0.0 0.891 116.8 46.2 -73.1 -41.0 229.0 262.2 164.5 23 335 A E H > S+ 0 0 34 1,-0.2 4,-1.2 2,-0.2 3,-0.4 0.936 113.7 47.8 -67.3 -47.4 226.4 261.0 166.9 24 336 A A H X S+ 0 0 5 -4,-3.4 4,-2.6 1,-0.2 -1,-0.2 0.858 104.5 61.9 -61.5 -36.7 223.7 260.7 164.3 25 337 A M H X S+ 0 0 71 -4,-1.4 4,-2.2 -5,-0.3 -1,-0.2 0.887 99.6 54.4 -58.4 -40.3 226.1 258.8 162.0 26 338 A V H X S+ 0 0 0 -4,-1.2 4,-2.1 -3,-0.4 -1,-0.2 0.908 112.9 42.3 -61.2 -40.7 226.4 256.0 164.6 27 339 A L H X S+ 0 0 9 -4,-1.2 4,-3.0 2,-0.2 6,-0.2 0.835 106.9 62.9 -75.1 -29.6 222.7 255.6 164.6 28 340 A R H X>S+ 0 0 103 -4,-2.6 5,-2.4 2,-0.2 4,-0.9 0.943 109.1 41.3 -58.4 -45.8 222.6 255.9 160.8 29 341 A M H ><5S+ 0 0 9 -4,-2.2 10,-1.3 1,-0.2 3,-0.8 0.936 114.7 50.9 -65.4 -47.5 224.7 252.8 160.7 30 342 A R H 3<5S+ 0 0 46 -4,-2.1 -2,-0.2 1,-0.3 -1,-0.2 0.819 111.2 49.6 -59.8 -32.7 222.6 251.2 163.4 31 343 A Y H 3<5S- 0 0 34 -4,-3.0 -1,-0.3 7,-0.2 -2,-0.2 0.660 112.6-120.6 -80.8 -18.2 219.5 252.1 161.5 32 344 A G T > - 0 0 82 -2,-0.3 4,-1.4 1,-0.1 3,-1.2 -0.313 37.1-103.7 -77.2 163.9 223.9 246.3 165.6 41 353 A L H 3> S+ 0 0 19 1,-0.3 4,-3.3 2,-0.2 5,-0.5 0.848 119.1 67.3 -55.6 -35.0 225.8 248.8 167.6 42 354 A E H 3> S+ 0 0 109 1,-0.2 4,-1.5 2,-0.2 -1,-0.3 0.870 103.0 45.4 -53.7 -39.4 228.7 246.3 167.7 43 355 A E H <> S+ 0 0 71 -3,-1.2 4,-1.0 3,-0.2 -1,-0.2 0.883 118.0 42.7 -71.8 -41.2 229.2 246.8 164.0 44 356 A V H X S+ 0 0 0 -4,-1.4 4,-1.6 2,-0.2 -2,-0.2 0.968 117.5 42.6 -71.3 -55.8 228.9 250.6 164.2 45 357 A G H >X>S+ 0 0 0 -4,-3.3 5,-2.0 1,-0.2 3,-0.6 0.941 117.7 46.6 -56.8 -49.5 231.0 251.2 167.2 46 358 A Q H 3<5S+ 0 0 119 -4,-1.5 -1,-0.2 -5,-0.5 -2,-0.2 0.799 106.3 61.3 -62.5 -28.9 233.7 248.7 166.1 47 359 A Y H 3<5S+ 0 0 144 -4,-1.0 -1,-0.2 -5,-0.1 -2,-0.2 0.860 118.8 26.0 -66.7 -34.7 233.5 250.3 162.7 48 360 A F H <<5S- 0 0 92 -4,-1.6 -2,-0.1 -3,-0.6 -3,-0.1 0.837 118.5 -83.7 -90.6 -91.3 234.6 253.6 164.2 49 361 A N T <5S+ 0 0 134 -4,-0.6 2,-0.3 1,-0.1 -3,-0.2 0.169 91.7 82.7-173.7 27.4 236.7 253.3 167.4 50 362 A V < - 0 0 42 -5,-2.0 -2,-0.2 -6,-0.2 -3,-0.1 -0.972 63.6-123.1-142.7 156.8 234.2 252.9 170.3 51 363 A T >> - 0 0 96 -2,-0.3 3,-2.1 -6,-0.1 4,-0.6 -0.169 52.5 -77.1 -86.9-176.5 232.1 250.3 172.0 52 364 A R H 3> S+ 0 0 135 1,-0.3 4,-3.0 2,-0.2 5,-0.2 0.791 122.8 76.4 -51.3 -31.1 228.3 250.3 172.6 53 365 A E H 3> S+ 0 0 118 1,-0.2 4,-2.6 2,-0.2 -1,-0.3 0.801 86.6 59.9 -52.8 -33.6 229.0 252.8 175.4 54 366 A R H <> S+ 0 0 65 -3,-2.1 4,-2.3 2,-0.2 -1,-0.2 0.973 112.9 34.6 -63.2 -53.4 229.4 255.5 172.8 55 367 A I H X S+ 0 0 1 -4,-0.6 4,-3.3 1,-0.2 5,-0.2 0.877 115.3 59.8 -67.2 -32.5 225.9 255.2 171.3 56 368 A R H X S+ 0 0 152 -4,-3.0 4,-1.3 1,-0.2 -2,-0.2 0.905 107.5 45.8 -57.6 -41.6 224.8 254.4 174.9 57 369 A Q H X S+ 0 0 108 -4,-2.6 4,-2.6 -5,-0.2 5,-0.3 0.916 111.3 51.1 -66.9 -46.4 226.1 257.8 175.8 58 370 A I H X S+ 0 0 4 -4,-2.3 4,-3.6 1,-0.2 5,-0.3 0.925 105.9 55.0 -58.7 -46.3 224.5 259.5 172.8 59 371 A E H X S+ 0 0 60 -4,-3.3 4,-1.5 2,-0.2 -1,-0.2 0.890 111.9 46.3 -54.8 -39.7 221.1 257.9 173.6 60 372 A V H >X S+ 0 0 93 -4,-1.3 4,-1.6 -5,-0.2 3,-0.6 0.991 117.3 39.0 -66.1 -63.0 221.4 259.5 177.1 61 373 A K H 3X S+ 0 0 111 -4,-2.6 4,-2.7 1,-0.3 5,-0.2 0.849 112.0 60.4 -56.9 -34.9 222.5 263.0 176.1 62 374 A A H 3X S+ 0 0 0 -4,-3.6 4,-2.1 -5,-0.3 -1,-0.3 0.910 103.0 51.6 -59.6 -40.8 220.1 262.8 173.2 63 375 A L H S+ 0 0 46 -5,-0.0 4,-1.9 2,-0.0 3,-0.3 0.103 80.4 145.5 179.1 43.3 209.8 262.0 173.4 73 385 A K H > S+ 0 0 44 1,-0.2 4,-3.1 2,-0.2 5,-0.3 0.847 75.9 60.2 -59.8 -35.4 210.0 261.0 169.7 74 386 A Y H > S+ 0 0 4 2,-0.2 4,-2.6 1,-0.2 -1,-0.2 0.909 106.1 47.1 -58.3 -45.2 213.3 259.2 170.4 75 387 A L H > S+ 0 0 98 -3,-0.3 4,-2.6 2,-0.2 -2,-0.2 0.951 117.2 40.1 -62.3 -54.8 211.6 256.9 172.9 76 388 A K H X S+ 0 0 87 -4,-1.9 4,-2.8 2,-0.2 5,-0.2 0.904 117.9 48.7 -63.6 -43.0 208.6 256.0 170.8 77 389 A S H X S+ 0 0 8 -4,-3.1 4,-1.7 -5,-0.2 -2,-0.2 0.916 115.2 44.1 -64.1 -43.3 210.7 255.7 167.6 78 390 A L H X S+ 0 0 25 -4,-2.6 4,-1.8 -5,-0.3 6,-0.2 0.876 114.6 50.5 -68.5 -37.3 213.3 253.5 169.4 79 391 A L H <>S+ 0 0 71 -4,-2.6 5,-0.6 -5,-0.2 6,-0.3 0.902 114.1 43.2 -66.5 -43.0 210.5 251.5 171.0 80 392 A S H <5S+ 0 0 64 -4,-2.8 -1,-0.2 1,-0.2 -2,-0.2 0.764 111.8 56.2 -73.8 -27.2 208.7 251.0 167.7 81 393 A L H <5S+ 0 0 99 -4,-1.7 -2,-0.2 -5,-0.2 -1,-0.2 0.859 108.2 47.5 -74.5 -37.9 212.0 250.2 166.0 82 394 A M T ><5S- 0 0 81 -4,-1.8 3,-0.6 -5,-0.1 0, 0.0 -0.248 102.6 -89.1 -96.3-174.1 213.1 247.4 168.3 83 395 A D T 3 5S+ 0 0 157 1,-0.2 -3,-0.1 -2,-0.1 -4,-0.1 0.019 88.5 114.6 -84.7 30.6 211.3 244.3 169.7 84 396 A E T 3 < + 0 0 115 -5,-0.6 2,-0.3 -6,-0.2 -1,-0.2 0.616 56.5 91.3 -74.3 -11.0 210.1 246.2 172.7 85 397 A N < 0 0 93 -3,-0.6 -5,-0.0 -6,-0.3 0, 0.0 -0.665 360.0 360.0 -88.2 139.7 206.6 245.7 171.4 86 398 A E 0 0 238 -2,-0.3 -2,-0.1 0, 0.0 -1,-0.1 -0.458 360.0 360.0 -74.6 360.0 204.5 242.7 172.5